mRNA_H-paniculata_contig34513.9208.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34513.9208.1
Unique NamemRNA_H-paniculata_contig34513.9208.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34513.9208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34513contigH-paniculata_contig34513:1366..1786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size249
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.08386-UTR-H-paniculata_contig34513:1365..15371622930065.08386-UTR-H-paniculata_contig34513:1365..1537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34513 1366..1537 +
1691481132.3469098-UTR-H-paniculata_contig34513:1365..15371691481132.3469098-UTR-H-paniculata_contig34513:1365..1537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34513 1366..1537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.10076-CDS-H-paniculata_contig34513:1537..17861622930065.10076-CDS-H-paniculata_contig34513:1537..1786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34513 1538..1786 +
1691481132.3581996-CDS-H-paniculata_contig34513:1537..17861691481132.3581996-CDS-H-paniculata_contig34513:1537..1786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34513 1538..1786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34513.9208.1prot_H-paniculata_contig34513.9208.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34513 1538..1786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34513.9208.1

>prot_H-paniculata_contig34513.9208.1 ID=prot_H-paniculata_contig34513.9208.1|Name=mRNA_H-paniculata_contig34513.9208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MPYFTSTLLHISTSKCNHAAAMDVLVSFGAEFEVRDNSTSWTPLHIASYY
SNYHVVSAPLRHKGDVEARNDRGWAPLQVACR*
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mRNA from alignment at H-paniculata_contig34513:1366..1786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34513.9208.1 ID=mRNA_H-paniculata_contig34513.9208.1|Name=mRNA_H-paniculata_contig34513.9208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=421bp|location=Sequence derived from alignment at H-paniculata_contig34513:1366..1786+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGCGCTTCATATTGCCATCGAAGCTGGGCATTATTTTGTAGTGAAGGT
TCTGTTGGCGGCCGGGGCGGAGTGGAGCCGGAAGGAGCTAGAGATTGCAA
CTTGGAAGGGATATGTGGAGATGATGATAGAACTTGCTCAGGATGGGGCG
AACATAAGGTCGTATAATCCCGATGCCATACTTTACAAGCACTCTACTGC
ACATTTCTACTTCGAAGTGCAACCATGCGGCAGCTATGGACGTGCTTGTA
AGTTTTGGGGCTGAGTTTGAAGTAAGAGACAACTCGACATCATGGACACC
CCTTCACATCGCGTCATATTACAGCAACTACCATGTTGTATCGGCCCCAT
TACGACACAAGGGGGATGTCGAAGCTCGGAATGATCGTGGATGGGCGCCG
TTGCAGGTAGCCTGCAGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig34513:1366..1786+

>mRNA_H-paniculata_contig34513.9208.1 ID=mRNA_H-paniculata_contig34513.9208.1|Name=mRNA_H-paniculata_contig34513.9208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig34513:1366..1786+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATACTTTACAAGCACTCTACTGCACATTTCTACTTCGAAGTGCAA
CCATGCGGCAGCTATGGACGTGCTTGTAAGTTTTGGGGCTGAGTTTGAAG
TAAGAGACAACTCGACATCATGGACACCCCTTCACATCGCGTCATATTAC
AGCAACTACCATGTTGTATCGGCCCCATTACGACACAAGGGGGATGTCGA
AGCTCGGAATGATCGTGGATGGGCGCCGTTGCAGGTAGCCTGCAGATGAA
TGCCATACTTTACAAGCACTCTACTGCACATTTCTACTTCGAAGTGCAAC
CATGCGGCAGCTATGGACGTGCTTGTAAGTTTTGGGGCTGAGTTTGAAGT
AAGAGACAACTCGACATCATGGACACCCCTTCACATCGCGTCATATTACA
GCAACTACCATGTTGTATCGGCCCCATTACGACACAAGGGGGATGTCGAA
GCTCGGAATGATCGTGGATGGGCGCCGTTGCAGGTAGCCTGCAGATGA
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