mRNA_H-paniculata_contig3451.9207.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3451.9207.1
Unique NamemRNA_H-paniculata_contig3451.9207.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Match: B7ZGN0_9PHAE (DSBA oxidoreductase n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN0_9PHAE)

HSP 1 Score: 342 bits (876), Expect = 1.620e-110
Identity = 164/220 (74.55%), Postives = 192/220 (87.27%), Query Frame = 1 
Query:  181 MSKFSIKVISDNVCPWCFVGKRNLESAIQKFSATQPPEAG---PSFEVSWKPFFLNVASPETSEEPITEYLEKKYGKGAGSRMATALGKAGERTGIDFNTERRVHNTIRSHRLVRLASEQGKGGDMIEQIFHGYFEEGRNIADVDVLLDLANKAKVECTKEYLQGNEGKQEVMYEYEKAARDAGVSGVPYFVLSREGSKAALPLSGAQPPEAFIEAFEAL 831
            M KF++KVISDNVCPWC+VGKRNLESA+++F+ +QP E     P F+V WKPFFLNV SPETSEEPI EYLEKKYGKGAGSRMA AL +AG+ TGI+FN +RRVHNTIRSHRLVRLA +Q KGGDMIEQ+FHGYFEEG+NIAD DVLL++A KA VECTKEYL+G EG+QEV+ EY+K  +  GVSGVPY+++SREGSKA +PLSGAQPPEAF+EAFEAL
Sbjct:    1 MPKFNVKVISDNVCPWCYVGKRNLESAMKQFATSQPTEKEQEPPVFDVRWKPFFLNVKSPETSEEPIQEYLEKKYGKGAGSRMAVALERAGKSTGINFNNDRRVHNTIRSHRLVRLADQQEKGGDMIEQLFHGYFEEGKNIADSDVLLEIAQKAGVECTKEYLEGKEGQQEVLNEYQKGVQTQGVSGVPYYIISREGSKATVPLSGAQPPEAFVEAFEAL 220
[Close]
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Match: A0A6H5KYU3_9PHAE (DSBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYU3_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 1.070e-104
Identity = 154/219 (70.32%), Postives = 188/219 (85.84%), Query Frame = 1 
Query:  181 MSKFSIKVISDNVCPWCFVGKRNLESAIQKFSATQPP-EAGPSFEVSWKPFFLNVASPETSEEPITEYLEKKYGKGAGSRMATALGKAGERTGIDFNTERRVHNTIRSHRLVRLASEQGKGGDMIEQIFHGYFEEGRNIADVDVLLDLANKAKVECTKEYLQGNEGKQEVMYEYEKAARDAGVSGVPYFVLSREGSKAALPLSGAQPPEAFIEAFEALS 834
            M+KF+IK+ SDNVCPWCFVGKRNLE+A+++F+A +P  ++ P F+V WKPFFLN+ +PETSE PITEYLEKKYGKGAGSRMA +L  AGE TGI FN +R+VHNTIRSHRLVR A  QGKGG+MI+Q+FH YFE+GRNIADVDVLL+LA KA VECTK+YL+G EG++EV+ EY+    + G+SGVPYF++SREGSKA +PLSG QPP AF+EAFEALS
Sbjct:    1 MAKFNIKIFSDNVCPWCFVGKRNLETAMKQFAAREPSTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLAMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECTKDYLEGKEGQEEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEALS 219
[Close]
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Match: A0A835YGU7_9STRA (Protein disulfide isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGU7_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.810e-52
Identity = 101/211 (47.87%), Postives = 137/211 (64.93%), Query Frame = 1 
Query:  205 ISDNVCPWCFVGKRNLESAIQKFSATQPPEAGPS-FEVSWKPFFLNVASPETSEEPITEYLEKKYGKGAGSRMATALGKAGERTGIDFNTERRVHNTIRSHRLVRLASEQGKGGDMIEQIFHGYFEEGRNIADVDVLLDLANKAKVEC-TKEYLQGNEGKQEVMYEYEKAARDAGVSGVPYFVLSREGSKAALPLSGAQPPEAFIEAFEAL 831
            +S  VCPWCF+GKR LE+AI++         GP   + +WKPFFL+  SP+ S  PI  +L +KYG  AG+RMA +L  AGE  GI F  +R V NTI SHRLV LA +QGK   +IE +F GYFE+G  ++ VD L+ +A  A +    + YL+  E +  VM E   +AR  G++GVP+FV++R+G+K  L LSGAQP + F EAF+AL
Sbjct:   16 LSPPVCPWCFIGKRRLEAAIRERGL------GPKDVQTTWKPFFLDANSPKDSGIPIGVHLRQKYGAQAGARMAASLAAAGEENGIKFKEDRTVQNTIMSHRLVHLAGKQGKQDAVIEALFSGYFEQGAKLSSVDTLVRIAETAGISGDVRAYLESGEDEDVVMREAFDSARRLGITGVPFFVIARDGNKERLTLSGAQPVDVFDEAFDAL 220
[Close]
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Match: A0A433CYQ7_9FUNG (DSBA domain-containing protein n=3 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CYQ7_9FUNG)

HSP 1 Score: 146 bits (369), Expect = 2.420e-36
Identity = 89/242 (36.78%), Postives = 133/242 (54.96%), Query Frame = 1 
Query:  151 LARTQENETAMSKFSIKVISDNVCPWCFVGKRNLESAIQKFSATQPPEAGPSFEVSWKPFFLNVASPETSEEPITEYLEKKYGKGAGSRM------------ATALGKAGERTGIDFNTERRVHNTIRSHRLVRLASEQGKGGDMIEQIFHGYFEEGRNIADVDVLLDLANKAKVE--CTKEYLQGNEGKQEVMYE-YEKAARDAGVSGVPYFVLSREGSKAALPLSGAQPPEAFIEAFEAL 831
            L RT          +I ++SD +CPWCFVGKR LE+AI +     P   G  FE  W P+ L+   P+ S +    Y+ KK+G+    +M            A++    G+   I FN   RV NT  SHRLV  A++QGK  +M+E++F  YFE+ R++ADV+ L ++A K  ++   T  +LQ +EG+ EV  E Y    +   +SGVP+F++ +  +     LSGAQPPE F+E F+ +
Sbjct:    7 LFRTMTTAIPSKVVTIDIVSDTICPWCFVGKRRLETAIAQAIKAHP---GTKFETVWHPYELDPTLPKESVDKHANYV-KKFGEERMKQMLPYMENIGRLLIASSPQSTGKAENISFNFGGRVGNTTDSHRLVWWATKQGKQDEMVEELFRHYFEQERDVADVETLAEIARKVGLDRNATLAFLQSDEGRAEVKAEIYRNMGKS--ISGVPHFMIDKRYT-----LSGAQPPETFVELFDEI 237
[Close]
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Match: B7FNV6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV6_PHATC)

HSP 1 Score: 147 bits (371), Expect = 2.730e-36
Identity = 96/251 (38.25%), Postives = 143/251 (56.97%), Query Frame = 1 
Query:  112 KPTYILHSSVSAFLARTQENETAMSKFSIKV--ISDNVCPWCFVGKRNLESAIQKFSATQPPEAGPSFEVSWKPFFLNVASPETSEEPITEYLEKKYGK-GAGSRMATALGKAGERTGIDFNTE----RRVHNTIRSHRLVRLASEQGKGGDMIEQIFHGYFEEGRNIADVDVLLDLANKAKVEC-TKEYLQGNEGKQEVMYEYEKAARDAGVSGVPYFVLSREGSKAALPLS--GAQPPEAFIEAFEALS 834
            +P  +  ++ ++    T+  E+  +K SIK+  ISD +CPWCFVGKRNLE+A++       PE   S EV+W PFFL+   PE  +  + +Y  + YG   AG RM   L +AG+++GI+F +      R+  TIRSHRL+  A  QGK   M+E++FH Y+EEG+ +  V  L + AN   +    + YL  ++ ++EV     K  +DA  SGVP F+ SR       P+S  G QPP +F+  F+ LS
Sbjct:   20 RPRGVADNARASTAIPTERAESTDNKLSIKIDIISDTMCPWCFVGKRNLETALRMV-----PEI--SAEVNWLPFFLDKNLPEEGKL-VKDYYIQNYGDPNAGERMMPHLIQAGKKSGIEFGSAFVEAERLFPTIRSHRLIEYAKRQGKQNQMVEELFHIYYEEGKRLNSVSDLENAANAVGLNGDVRAYLLSDQDEKEVFETAAKIKKDA--SGVPTFLFSRSDLPEMKPVSFSGGQPPTSFLAIFKHLS 260
[Close]
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Match: A0A251LPW5_MANES (DSBA domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A251LPW5_MANES)

HSP 1 Score: 144 bits (364), Expect = 6.400e-36
Identity = 88/229 (38.43%), Postives = 128/229 (55.90%), Query Frame = 1 
Query:  151 LARTQENETAMSKFSIKVISDNVCPWCFVGKRNLESAIQKFSATQPPEAGPSFEVSWKPFFLNVASPETSEEPITEYLEKKYGKGAGSRMATALGKAGERTGIDFNTERRVHNTIRSHRLVRLASEQG--KGGDMIEQIFHGYFEEGRNIADVDVLLDLANKAKVECTKEYLQG-NEGKQEVMYEYEKAARDAGVSGVPYFVLSREGSKAALPLSGAQPPEAFIEAFEA 828
            + ++  N +      I V SD VCPWCFVGK+NL+ AI              FE+ W PFFL+ ++P+     + +Y  +K+G G    MA  + +     G+D+NT     NT+ SHRLV  A +QG  K  +++E++F GYF + + + D + LL+ A KA VE   E+L+  N G +EV  E  K +  A +SGVPY+V+S +       LSG QP EAF+ AFEA
Sbjct:    1 MTQSFSNNSGKKLIQIDVSSDTVCPWCFVGKKNLDKAIAASKDRF------DFEIKWHPFFLDPSAPKEGVNKL-QYYRRKFGSGTDGMMAQ-MTQIFRGLGLDYNTSGLTGNTLDSHRLVYFAGQQGLDKQHNLVEELFLGYFTQAKYVGDREFLLECAAKAGVEGAAEFLEDPNNGVKEVNDELNKYS--ANISGVPYYVVSGKHK-----LSGGQPTEAFLRAFEA 214
[Close]
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Match: A0A0G4L6G5_9PEZI (DSBA domain-containing protein n=5 Tax=Verticillium TaxID=1036719 RepID=A0A0G4L6G5_9PEZI)

HSP 1 Score: 143 bits (360), Expect = 2.340e-35
Identity = 84/218 (38.53%), Postives = 125/218 (57.34%), Query Frame = 1 
Query:  181 MSKFSIKVISDNVCPWCFVGKRNLESAIQKFSATQPPEAGPSFEVSWKPFFLNVASPETSEEPITEYLEKKYGKGAGSRMATALGKAGERTGIDFNTERRVHNTIRSHRLVRLASEQGKGGD--MIEQIFHGYFEEGRNIADVDVLLDLANKAKVEC--TKEYLQGNEGKQEVMYEYEKAARDAGVSGVPYFVLSREGSKAALPLSGAQPPEAFIEAF 822
            M+ F+IK+ISDNVCPWC+VGKR L+ AI  +  T P     +F V+W PF+L+  SP+    P+ E + +++G G    M+  L + G   GI F+ + R+ NT  SHR+V LA  +G      ++ +I   YFEE  +I   D+L+  A K  +E    + +L+ + G  +V  E ++A    GVSGVP+FV+  +       L GAQ  EAF+EAF
Sbjct:    1 MTNFNIKIISDNVCPWCYVGKRRLDKAIALYQKTVPAGKDDTFTVTWSPFYLDPTSPKQGV-PLRERMAQRFGPGRFDAMSARLAQIGAGEGIRFSFDSRIGNTRDSHRVVALAQAKGPETQNRVVAEIMRSYFEEDGDITSKDMLVQAAVKGGLEAGEVRAWLESDGGGAQVDREVQEAYA-LGVSGVPHFVVDGQ------QLGGAQDVEAFVEAF 210
[Close]
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Match: A0A251Q560_PRUPE (DSBA domain-containing protein n=11 Tax=Prunus TaxID=3754 RepID=A0A251Q560_PRUPE)

HSP 1 Score: 143 bits (361), Expect = 2.740e-35
Identity = 87/240 (36.25%), Postives = 131/240 (54.58%), Query Frame = 1 
Query:  121 YILHSSVSAFLARTQENETAMSKF-SIKVISDNVCPWCFVGKRNLESAIQKFSATQPPEAGPSFEVSWKPFFLNVASPETSEEPITEYLEKKYGKGAGSRMATALGKAGERTGIDFNTERRVHNTIRSHRLVRLASEQG--KGGDMIEQIFHGYFEEGRNIADVDVLLDLANKAKVECTKEYLQG-NEGKQEVMYEYEKAARDAGVSGVPYFVLSREGSKAALPLSGAQPPEAFIEAFEA 828
            +IL  S+   L +T    +A  K   I ++SD VCPWCFVGK+NL+ A++             FEV W PF LN  +P+   +    Y E+K+G G   RM + + +     G+++N      NT+ SHRL+  A  QG  K  +++ ++F GYF + + I D + LL+ A K  VE   E+L+  N G  EV  E +K  +D  ++GVP+F+++    +    LSG QPPE F+ AFEA
Sbjct:    6 FILKPSIFKTLHKTMAGGSAAKKLIQIDIVSDTVCPWCFVGKKNLDKALEASRDRY------DFEVRWHPFQLNPNAPKEGVDK-KRYYEEKFGSGMSGRMESRMSEIFRGHGLEYNLSGLTGNTLDSHRLIYFAGLQGHEKQHELVGELFLGYFTQEKYIGDREFLLESARKIGVEGAAEFLEDPNNGLNEVNEELKKYTKD--INGVPHFLINNGKQE----LSGGQPPEVFLRAFEA 232
[Close]
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Match: B3SBG0_TRIAD (DSBA domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SBG0_TRIAD)

HSP 1 Score: 143 bits (360), Expect = 2.850e-35
Identity = 87/219 (39.73%), Postives = 129/219 (58.90%), Query Frame = 1 
Query:  196 IKVISDNVCPWCFVGKRNLESAIQKFSATQPPEAGPSFEVSWKPFFLNVASPETSEEPITEYLEKKYGKGAG--SRMATA-LGKAGERTGIDFNTERRVHNTIRSHRLVRLASEQGKGGDMIEQIFHGYFEEGRNIADVDVLLDLANKA--KVECTKEYLQGNEGKQEVMYEYEKAARDAGVSGVPYFVLSREGSK--AALPLSGAQPPEAFIEAFEAL 831
            I + SD +CPWCFVGKR+LE+A++ F +T        F++ WKPF LN  +PE    P+ EYL ++YG+     +R  T+ L  AG + G++F++ R+  N+IRSH L+  A  + K   + E +F  YF +G NI DV VLLD A +   K E  K+ LQ  E +++++ E  K A    + GVP+FV+S  G +   A+PL G QP E F   F ++
Sbjct:   10 IDITSDTMCPWCFVGKRHLETAMKDFESTF------EFDIEWKPFLLNSNTPEEGI-PVLEYLAQRYGQQVADDARNGTSSLIAAGRKVGLNFDSNRKFVNSIRSHCLLDYARTEKKQNQLAELLFQRYFIDGNNINDVKVLLDCAKEIGLKAEEAKKSLQDKERRKKIIEEA-KVATQNQIHGVPHFVISLIGDQHGKAMPLHGCQPIEMFRRVFTSI 220
[Close]
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Match: A0A7J7CNI2_TRIWF (DSBA domain-containing protein n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CNI2_TRIWF)

HSP 1 Score: 142 bits (357), Expect = 5.890e-35
Identity = 85/228 (37.28%), Postives = 127/228 (55.70%), Query Frame = 1 
Query:  151 LARTQENETAMSKFSIKVISDNVCPWCFVGKRNLESAIQKFSATQPPEAGPSFEVSWKPFFLNVASPETSEEPITEYLEKKYGKGAGSRMATALGKAGERTGIDFNTERRVHNTIRSHRLVRLASEQG--KGGDMIEQIFHGYFEEGRNIADVDVLLDLANKAKVECTKEYLQG-NEGKQEVMYEYEKAARDAGVSGVPYFVLSREGSKAALPLSGAQPPEAFIEAFE 825
            +A +  N+T      I + SD VCPWCFVGKRNL+ AI              FE+SW PFFLN ++P+     + E+   K+G      MA  + +     G+++N      NT+ SHRL+  A ++G  K  +++E++F GYF + + I D + LL+ ANK  +E   EYL+  N G +EV  E +K +    +SGVPYF+++++       LSG QPPE F+ AFE
Sbjct:    1 MAHSGINDTGKKLIRIDISSDTVCPWCFVGKRNLDKAIAASKDRF------DFEISWHPFFLNPSAPKEGINKL-EFYRSKFGSEVEGIMAR-MTEVFRGLGLEYNISGLTGNTLDSHRLIYFAGQKGLEKQQNLVEELFLGYFTQAKYIGDREFLLESANKVGIEGAAEYLEDPNNGVKEVNEELDKYS--GHISGVPYFLINQKHQ-----LSGGQPPEVFLRAFE 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3451.9207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGN0_9PHAE1.620e-11074.55DSBA oxidoreductase n=1 Tax=Laminaria digitata Tax... [more]
A0A6H5KYU3_9PHAE1.070e-10470.32DSBA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YGU7_9STRA4.810e-5247.87Protein disulfide isomerase n=1 Tax=Tribonema minu... [more]
A0A433CYQ7_9FUNG2.420e-3636.78DSBA domain-containing protein n=3 Tax=Jimgerdeman... [more]
B7FNV6_PHATC2.730e-3638.25Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A251LPW5_MANES6.400e-3638.43DSBA domain-containing protein n=1 Tax=Manihot esc... [more]
A0A0G4L6G5_9PEZI2.340e-3538.53DSBA domain-containing protein n=5 Tax=Verticilliu... [more]
A0A251Q560_PRUPE2.740e-3536.25DSBA domain-containing protein n=11 Tax=Prunus Tax... [more]
B3SBG0_TRIAD2.850e-3539.73DSBA domain-containing protein n=2 Tax=Trichoplax ... [more]
A0A7J7CNI2_TRIWF5.890e-3537.28DSBA domain-containing protein n=2 Tax=Tripterygiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3451contigH-paniculata_contig3451:12605..17921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.3
Seed ortholog evalue4.3e-86
Seed eggNOG ortholog2880.D8LHI5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DSBA-like thioredoxin domain
EggNOG OGs2QTH7@2759,COG2761@1
Ec32 ortholog descriptionProtein disulfide isomerase
Ec32 orthologEc-11_003940.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2057
Cds size657
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.8684099-UTR-H-paniculata_contig3451:12604..127841622930064.8684099-UTR-H-paniculata_contig3451:12604..12784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3451 12605..12784 +
1691481132.2745063-UTR-H-paniculata_contig3451:12604..127841691481132.2745063-UTR-H-paniculata_contig3451:12604..12784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3451 12605..12784 +
1622930065.037942-UTR-H-paniculata_contig3451:16701..179211622930065.037942-UTR-H-paniculata_contig3451:16701..17921Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3451 16702..17921 +
1691481132.3326347-UTR-H-paniculata_contig3451:16701..179211691481132.3326347-UTR-H-paniculata_contig3451:16701..17921Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3451 16702..17921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.916603-CDS-H-paniculata_contig3451:12784..128051622930064.916603-CDS-H-paniculata_contig3451:12784..12805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3451 12785..12805 +
1691481132.2842257-CDS-H-paniculata_contig3451:12784..128051691481132.2842257-CDS-H-paniculata_contig3451:12784..12805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3451 12785..12805 +
1622930064.9309347-CDS-H-paniculata_contig3451:13695..138691622930064.9309347-CDS-H-paniculata_contig3451:13695..13869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3451 13696..13869 +
1691481132.2928061-CDS-H-paniculata_contig3451:13695..138691691481132.2928061-CDS-H-paniculata_contig3451:13695..13869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3451 13696..13869 +
1622930064.962866-CDS-H-paniculata_contig3451:14992..150931622930064.962866-CDS-H-paniculata_contig3451:14992..15093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3451 14993..15093 +
1691481132.3023922-CDS-H-paniculata_contig3451:14992..150931691481132.3023922-CDS-H-paniculata_contig3451:14992..15093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3451 14993..15093 +
1622930065.0060725-CDS-H-paniculata_contig3451:15552..157061622930065.0060725-CDS-H-paniculata_contig3451:15552..15706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3451 15553..15706 +
1691481132.3127866-CDS-H-paniculata_contig3451:15552..157061691481132.3127866-CDS-H-paniculata_contig3451:15552..15706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3451 15553..15706 +
1622930065.0190113-CDS-H-paniculata_contig3451:16494..167011622930065.0190113-CDS-H-paniculata_contig3451:16494..16701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3451 16495..16701 +
1691481132.3226743-CDS-H-paniculata_contig3451:16494..167011691481132.3226743-CDS-H-paniculata_contig3451:16494..16701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3451 16495..16701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3451.9207.1prot_H-paniculata_contig3451.9207.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3451 12785..16701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3451.9207.1

>prot_H-paniculata_contig3451.9207.1 ID=prot_H-paniculata_contig3451.9207.1|Name=mRNA_H-paniculata_contig3451.9207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MSKFSIKVISDNVCPWCFVGKRNLESAIQKFSATQPPEAGPSFEVSWKPF
FLNVASPETSEEPITEYLEKKYGKGAGSRMATALGKAGERTGIDFNTERR
VHNTIRSHRLVRLASEQGKGGDMIEQIFHGYFEEGRNIADVDVLLDLANK
AKVECTKEYLQGNEGKQEVMYEYEKAARDAGVSGVPYFVLSREGSKAALP
LSGAQPPEAFIEAFEALS*
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mRNA from alignment at H-paniculata_contig3451:12605..17921+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3451.9207.1 ID=mRNA_H-paniculata_contig3451.9207.1|Name=mRNA_H-paniculata_contig3451.9207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5317bp|location=Sequence derived from alignment at H-paniculata_contig3451:12605..17921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTTCTTCTAACTTGTTCTCGACGAAACAAGGGTACCACAGCGAGAGC
TGCACGTTGCACATAGCACCCCCCAACTTCACAACAATAGGAGACCCGGA
AACGGTGAATAAAACCTACTTATATTCTGCACTCGTCAGTTTCAGCATTT
CTCGCACGCACTCAGGAGAACGAAACTGCCATGTCTAAATTCAGCATCAA
GGTGAGTTTGTTTCATGAGGCGAGTAAACAACAATATCTTAACACGCCAC
TCATCGTGACCAACAGATTCTACGGACTGACTGAAGGTAGACAACGTGGT
GTAGGCAGCGTGAACCAGGCAGCAATTCGTGCGGGATACGAATGTAGTGC
TGTAGCTCTTTTCAATACCTTGCAAATCCAAATACCCTCTACTGTTGCTG
GAGTGCCTTTGGTGTACCCAATCTGGGAATGGATCGCAACTTTGTCCTGA
CGATTTCCCGAAGAGGGATTGGTCATGTCAAGGCACCCAACGACACCTGC
CGTTTGCGTTTGGTTTCCCACGGCTACAGATTCTGTGATGACTGTGTTTG
GTTCGCTTGAGGTTATAAATACTTGTAGGTTCTCTTAGGTTCCCTGGCCT
GCGGCTTGTGAATGCGATTGCCCGTTTCAGAGCTAATACTCAAGATAACC
TCTCTCTCTCAGAAAGCGTCCTTTACGGTGCGGCAGTAGAGGTGAATGTT
GCCCAAAGAACATGGTTGGGGTTTTCGAAGTTGTTTTTGCATTTTACGAC
GACAGGGAGGACGCACCATCCCACTGCGTGTCTGCGTTTTTCCACGTTCG
TGGGCCTATGAGGTGTCTCGACCAGGAGGTGGACAGCATACAAAATAGCA
TATATATTATTGGTGGGCATCAAAGTTTGTGTAACTGTTCCGAATATTTC
CATGAGGATGTTGGTGTGATGATCGTCGTAGGTATGGTGGTCGTAGACAT
GACTGCACTATCTAGGTGGGACGGAGACTAGCTGCTAAAGTATCCATAGT
ACATACTACAATGTACAGATAGTTATGTTAGAAAAAAAATGTTCATGCCT
AACGAACAAAAACTGCATGACGGGTCCCACACAATCAACAGGTTATCAGC
GACAACGTGTGTCCCTGGTGTTTCGTCGGCAAGCGGAACCTCGAGAGCGC
GATCCAGAAGTTCTCCGCCACGCAACCACCAGAGGCCGGTCCTTCTTTCG
AAGTGAGCTGGAAGCCATTTTTCCTCAATGTGGCCTCGCCGGAGACATCG
GAGGAACCAATCACGGTAATATTCGAGCACTTTGAATTAAAGATACCCCA
CAATACTTGTGGGGTCTTTGATGTCCTACTTATTGTGCCGGTGCATGGAG
ATATGAATGCCTGAGCTGCACGAAGACCAGCGGTGCGGGCTTTGAGCGAA
GTTTGAGCCCCCGTATTGTACTTGTTGTGTTGGTGCAGTAAGTTTGGCCA
TCTCCTAGTTTAGAATTGCGTGTTCCAAGAATATAGTATCTGAAAAGAAG
ACATCATGGTCGACCTGGGTGTATCAATGTCATATCTTTTGTCACATCCT
CCTTGGGTAAAGTCGTCAGCAAGAATAAATCGAACTGCGACATGTTACAC
CCCAGGTTGCCTCGAATGTCATTACAGCTAAGTGAAGCAGAGGGTGTCTT
GCATGTAGCATTTGATCATCCCACATGGGCGACGTCGACGTATTGGAAAC
GACCAATTTGTTGCAGCTCACAAATTGAGTTGCGGCCCACATGAACGCCG
GAGATGAGCGGCATGACGAAAGAGTCGTTCAGCGAGAGAGAAAGGGAGAA
GGTACCTGCGATTTTCCAAGCGGTCAATCTTGTTGAAATGAGTCAAATGT
TCTGCCGAAAACTCGTGGTCGACAGATGACGTCACTTTTCGTGCGGGGTA
ACTTGTGGCGATAGACGACATCACGTTGTTGGATTCTGGTTGATGAACAT
TTGGTGTAGAATTTTGATTGGTCCACCATGATGACGTCAAGACTTTATGG
TTTCTGGTAGAGATAGCCCAAAAAATTCCATCAATACTCATAAAGGTCAT
CGTTAGTAAAAATAATCGTCGCGGGCCAACAACTTTCCCAAATTGTCCCG
TCGACTACCTCCATTAATCTCTCTAGACGAACAAGTTCATGGTTTAACTA
CGCCACATGGCAACAAATATAGAAACATGCTCCTCCAACGAAGTGCTGAA
GTGTGGCCGTGATGAGTTGTTTCTTCTGTAGGTGACGGCATTCCTCTGAA
CCTCAGATTAGGGTTGGGCCTGGCCCATATCCTTTTCATAGGCATCGCTG
TCCGCTATAAACGATGGCTGGATGCCTGGGCCATATCCAATCTTCGTTTC
ATTTTCCGTTTGGGCAAAATTGCTGTCGGTGGATGCAGGAATACCTGGAG
AAAAAGTATGGGAAGGGCGCAGGTTCACGCATGGCGACCGCCCTAGGAAA
GGCCGGGGAGCGTACGGGAATCGACTTCAACACTGAGAGGCAAGTATAAT
TTGATATCGACGGAGAGAGGCAGACGAATGGGCTTTCGAGGGCAACAGTA
CAAGCTGCGCTGAGTGTGCCTCACTGGCTCTGTGGTATACGATTCGTCGT
ACGAAGTACATCATCGATTTCCAAAATTGGGTTGGTTTGAGCTGTGTCGG
GCGCTCTCTCGATTGGCCGCCAGTCCACGAACACACGGTGGGAATATGAC
GGTCTGCGTCTCAAGCACCTTTCAAACCTCCAGCAATCTTGTCGGCGTAC
ACATGATGGCATGCTTGCCGGAATGAGCTGCGAAAGGTCTGTGTTGGTCA
AGCACGCTTCGACCCTGTACCTGGAATGATATGTCGAGATTCGCTTTCTT
GTTGGCAGGTTAAGTTCCGAGTATTGTTGCTGCTTTTCACGTATTCTAAC
CCCCACCCTCGTTTTGTCGGCAAACGAAAATAAACGATATAAACACAGGC
GGGTGCACAACACCATCCGTTCCCACCGTCTAGTTCGGCTGGCCAGCGAA
CAGGGGAAAGGTGGCGACATGATAGAGCAGATATTCCACGGGTACTTCGA
GGAGGGCAGGAACATCGCGGACGTCGATGTGCTCCTCGACCTCGCCAACA
AGGTATGCGTGGTGTGTCAGGCCTCATCATGTAGACTACTTTTGGTGAGG
ATCAACAGCAAGGACTGCAAGCCTTTTAGCCTGTCGACCTCGATTGAAAG
GGAAGCTTTTTTATGTTCACCATTAGGCAACATACGGTTCAAGCAGTAAA
CCGGTTCGACGTCAATTGGGCGGTCCTCCCCTCTTTCCCTCCGGTGTAGC
CTAATCGAGTCGAGGGCTGTTGGTTTCTCTTTCCAACAATGCGAGCGGTT
TTAGTTTCCACCCTTGTATTACTGTCAGCGTCGTGCAGTGTGAAAGAAGG
CTAGTACTTCTCACCGGTTGTTATGGAAGTGACGTTGGCTCTTTTTTCAC
TTTCACATACAACTTTTCTTAGTTGCCGTAGTTGATACCGCAAGCAAGCA
GAATTGTGGTCTGATTCGATTCCACCGCTTGCCGTTCTCACCATACCTCG
AGTCCATACTTACGTCAACTGATACTGTAGGCGATCAGAGCCATGCTGCA
CAAGCTCCAGTGAATGCAATTGTTGGTACCCGTTTAATGATGCCCTTCCC
TCAATCCTTACGAAATGTTGGTGCCCCCCACATGTACCGCGTATTCTGAC
TAACGCGTCATTCTCTTTGCGCTTCCTGGGAACGAAGACGTAAAACTGAA
CATTGGGAGCAACAACACAAGACCTTCAGTATGAGATACTGCCACCACTT
CCAAGTCACCAAAAGCTAACGTTTTCCTGTTTCTGCGATTTGAACCTACC
TCGATGCGCATGTTTGGCTCTGTTTTCGTTTTCGCATCAGGCCAAGGTTG
AATGCACCAAGGAGTATCTGCAGGGCAACGAGGGGAAACAAGAGGTCATG
TACGAGTATGAAAAGGCCGCCAGGGATGCTGGTGTATCGGGAGTGCCCTA
CTTCGTGTTATCGCGTGAAGGGAGTAAGGCTGCCCTTCCGTTGTCGGGGG
CACAGCCACCAGAGGCCTTCATCGAGGCGTTCGAGGCCCTCTCTTGACTA
AGATTTAATAATTGTCAGAGTTGAAAACAAAAATTAAGTACAATAAGTTC
CCGCCCACGACAGCATCGTGGAGCATTCTTGCCTGCATTTCGTGTACGCC
GACTGTAGTCGCGGGGCACGCGTTTGTGAGTATGTGCATTCTTTGTCATT
GCATTATGCTTGTAGGCAAACCTCCCGAATGAAAACGGCAGCAGAGGAAA
TGCGTAACTGTGCACCTAAGAGGAGGATGGTGGAGGCTTAGCAACAAGGG
GGCGACGACGTAAAGTGCGACTCGGGGGACGAGGTAGCGTTGGCAATAGT
CGCTCAGAAATTACGGTAAGGGGGGGCGTTATACAACTTCAGAGACGATG
ATTACCCCGAATTTCGGGGCGAAGTTGACCGGCGAAAGATCTATGCCCCA
AAAACCGATCATGAAGGAGGGGGAGAAATGTCTAACTGACGTAGCACAAA
AGTTGAGAAATGAGTATGTACATATGCGTGTTGGTGTAGAGCTGTGTATG
TTGCTGGCATCATGGTATGGTGTACTCTTCAAATCTCATCATCTTCTGAT
CGCGTATTTGACCAATGCGGTTATTTTGTCGAAGAGAGAAAGGGGGTTGG
CGGTCCGTCGTTGTATTGTCCTATATTTTATGCAAGTGCACCGTCGGTTG
GAATTGTTGATGCGTTACTGCAAGGTTTTTGGACAAAAGAATAATGGTAG
TTGTAATATGATGTCTACCCATATCAGTCCTTTTCTCGCCCCACCCCATC
CAATCCCCGTCTTATCCCTGTCATCAGACAGGGAGAACGGTGGTTATGCC
AAAATTAGGGGATAGGGAGCCGCCCGTGGTCAGACAGAGCTTAGTACGAA
CACAACCAGTGCATACAGCACAAACAGAAACTTGGCCTAGGATTTTGCCC
ACAACGATTGCCGCGCTGGACATGTAGTTGTTGTCACATTATGCATTTTT
TAACATGAGGCTGGATCCGTGGGTAAACAGGTTATTGTATTAGTAGTAGA
TTAATGTCCATAAAACAATTTTTACGCGAAGAAATCAAGCGTGGCACCGC
AACCCTCATCTGCTATTCCTGAGGATTTTTCGTGTATCGTGGTCTACACG
CGTATAGAAGTTCTGAACGTTAAATTGAAGACACGACGGAGGTGGATGAC
GGAGGTCATTCCGTTCAATGACAAAACGGATTTTTGCGCTGGATTCCTTG
GAACATTTAACATTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig3451:12605..17921+

>mRNA_H-paniculata_contig3451.9207.1 ID=mRNA_H-paniculata_contig3451.9207.1|Name=mRNA_H-paniculata_contig3451.9207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig3451:12605..17921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTAAATTCAGCATCAAGATGTCTAAATTCAGCATCAAGGTTATCAG
CGACAACGTGTGTCCCTGGTGTTTCGTCGGCAAGCGGAACCTCGAGAGCG
CGATCCAGAAGTTCTCCGCCACGCAACCACCAGAGGCCGGTCCTTCTTTC
GAAGTGAGCTGGAAGCCATTTTTCCTCAATGTGGCCTCGCCGGAGACATC
GGAGGAACCAATCACGGTTATCAGCGACAACGTGTGTCCCTGGTGTTTCG
TCGGCAAGCGGAACCTCGAGAGCGCGATCCAGAAGTTCTCCGCCACGCAA
CCACCAGAGGCCGGTCCTTCTTTCGAAGTGAGCTGGAAGCCATTTTTCCT
CAATGTGGCCTCGCCGGAGACATCGGAGGAACCAATCACGGAATACCTGG
AGAAAAAGTATGGGAAGGGCGCAGGTTCACGCATGGCGACCGCCCTAGGA
AAGGCCGGGGAGCGTACGGGAATCGACTTCAACACTGAGAGGAATACCTG
GAGAAAAAGTATGGGAAGGGCGCAGGTTCACGCATGGCGACCGCCCTAGG
AAAGGCCGGGGAGCGTACGGGAATCGACTTCAACACTGAGAGGCGGGTGC
ACAACACCATCCGTTCCCACCGTCTAGTTCGGCTGGCCAGCGAACAGGGG
AAAGGTGGCGACATGATAGAGCAGATATTCCACGGGTACTTCGAGGAGGG
CAGGAACATCGCGGACGTCGATGTGCTCCTCGACCTCGCCAACAAGGCGG
GTGCACAACACCATCCGTTCCCACCGTCTAGTTCGGCTGGCCAGCGAACA
GGGGAAAGGTGGCGACATGATAGAGCAGATATTCCACGGGTACTTCGAGG
AGGGCAGGAACATCGCGGACGTCGATGTGCTCCTCGACCTCGCCAACAAG
GCCAAGGTTGAATGCACCAAGGAGTATCTGCAGGGCAACGAGGGGAAACA
AGAGGTCATGTACGAGTATGAAAAGGCCGCCAGGGATGCTGGTGTATCGG
GAGTGCCCTACTTCGTGTTATCGCGTGAAGGGAGTAAGGCTGCCCTTCCG
TTGTCGGGGGCACAGCCACCAGAGGCCTTCATCGAGGCGTTCGAGGCCCT
CTCTTGAGCCAAGGTTGAATGCACCAAGGAGTATCTGCAGGGCAACGAGG
GGAAACAAGAGGTCATGTACGAGTATGAAAAGGCCGCCAGGGATGCTGGT
GTATCGGGAGTGCCCTACTTCGTGTTATCGCGTGAAGGGAGTAAGGCTGC
CCTTCCGTTGTCGGGGGCACAGCCACCAGAGGCCTTCATCGAGGCGTTCG
AGGCCCTCTCTTGA
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