mRNA_H-paniculata_contig3448.9195.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3448.9195.1
Unique NamemRNA_H-paniculata_contig3448.9195.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Match: D7G1A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A0_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.390e-14
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:  412 RIATLLEASSSGKGPGRGGQEGEEDKY---IIPGSGMRGVDTSQLSGSERRDAEWFERTAGRESRGELQWFENPVAYVAVFVGVTGLVFVYAVLACFIPGYC 708
            R+A   E SS      + G+EG++D     ++ GSG+RGVDTS+L+G+E+RDA+WF RT  RE    L WFE+PV Y+ + + V  +  V+  L C++PG C
Sbjct:   12 RVAAAAERSSWATSATKRGKEGDDDGDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGALNCYVPGIC 109
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BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Match: A0A6H5KI54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI54_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.010e-11
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:  460 RGGQEGEEDKY----IIPGSGMRGVDTSQLSGSERRDAEWFERTAGRESRGELQWFENPVAYVAVFVGVTGLVFVYAVLACFIPGYC 708
            RG    ++D      ++ GSG+RGVDTS+L+G+E+RDA+WF RT  RE    L WFE+PV Y+ + + V  +  V+    C++PG C
Sbjct:   83 RGNTSNDDDDIDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGAFNCYVPGIC 165
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BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Match: D4HLI6_SACLA (NADH-ubiquinone oxidoreductase chain 1 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=D4HLI6_SACLA)

HSP 1 Score: 63.9 bits (154), Expect = 4.230e-8
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query: 1072 PNVIIGYMGLLQSLADGLKRFVKETILPTNANLVLF 1179
            PNVI GYMGLLQ LADGLK FVKET+LPTNAN+VLF
Sbjct:    5 PNVI-GYMGLLQPLADGLKLFVKETVLPTNANIVLF 39
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BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Match: D4HLH4_9PHAE (NADH-ubiquinone oxidoreductase chain 1 (Fragment) n=2 Tax=Ectocarpales TaxID=2877 RepID=D4HLH4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.070e-8
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query: 1072 PNVIIGYMGLLQSLADGLKRFVKETILPTNANLVLF 1179
            PNVI GYMGLLQ LADGLK FVKET+LPTNAN+VLF
Sbjct:    4 PNVI-GYMGLLQPLADGLKLFVKETVLPTNANIVLF 38
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BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Match: D6MQR4_9PHAE (NADH-ubiquinone oxidoreductase chain 1 (Fragment) n=18 Tax=Phaeophyceae TaxID=2870 RepID=D6MQR4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.150e-8
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query: 1072 PNVIIGYMGLLQSLADGLKRFVKETILPTNANLVLF 1179
            PNVI GYMGLLQ LADGLK FVKET+LPTNAN+VLF
Sbjct:    5 PNVI-GYMGLLQPLADGLKLFVKETVLPTNANIVLF 39
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BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Match: D6MQR6_9PHAE (NADH-ubiquinone oxidoreductase chain 1 (Fragment) n=4 Tax=Ectocarpales TaxID=2877 RepID=D6MQR6_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.150e-8
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query: 1072 PNVIIGYMGLLQSLADGLKRFVKETILPTNANLVLF 1179
            PNVI GYMGLLQ LADGLK FVKET+LPTNAN+VLF
Sbjct:    5 PNVI-GYMGLLQPLADGLKLFVKETVLPTNANIVLF 39
[Close]
BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Match: D4HLG2_9PHAE (NADH-ubiquinone oxidoreductase chain 1 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=D4HLG2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.150e-8
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query: 1072 PNVIIGYMGLLQSLADGLKRFVKETILPTNANLVLF 1179
            PNVI GYMGLLQ LADGLK FVKET+LPTNAN+VLF
Sbjct:    5 PNVI-GYMGLLQPLADGLKLFVKETVLPTNANIVLF 39
[Close]
BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Match: D4HLI8_9PHAE (NADH-ubiquinone oxidoreductase chain 1 (Fragment) n=2 Tax=Phyllariaceae TaxID=130732 RepID=D4HLI8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.150e-8
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query: 1072 PNVIIGYMGLLQSLADGLKRFVKETILPTNANLVLF 1179
            PNVI GYMGLLQ LADGLK FVKET+LPTNAN+VLF
Sbjct:    5 PNVI-GYMGLLQPLADGLKLFVKETVLPTNANIVLF 39
[Close]
BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Match: I1T1F4_9PHAE (NADH-ubiquinone oxidoreductase chain 1 (Fragment) n=1 Tax=Chordariopsis capensis TaxID=553375 RepID=I1T1F4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.470e-8
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query: 1072 PNVIIGYMGLLQSLADGLKRFVKETILPTNANLVLF 1179
            PNVI GY+GLLQ LADGLK FVKET+LPTNAN VLF
Sbjct:    5 PNVI-GYLGLLQPLADGLKLFVKETLLPTNANTVLF 39
[Close]
BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Match: E6ZEQ7_ECTSI (NADH-ubiquinone oxidoreductase chain 1 n=66 Tax=Phaeophyceae TaxID=2870 RepID=E6ZEQ7_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.250e-7
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query: 1072 PNVIIGYMGLLQSLADGLKRFVKETILPTNANLVLF 1179
            PNVI GYMGLLQ LADGLK FVKET+LPTNAN+VLF
Sbjct:   43 PNVI-GYMGLLQPLADGLKLFVKETVLPTNANIVLF 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3448.9195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1A0_ECTSI2.390e-1443.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI54_9PHAE5.010e-1142.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D4HLI6_SACLA4.230e-886.11NADH-ubiquinone oxidoreductase chain 1 (Fragment) ... [more]
D4HLH4_9PHAE7.070e-886.11NADH-ubiquinone oxidoreductase chain 1 (Fragment) ... [more]
D6MQR4_9PHAE7.150e-886.11NADH-ubiquinone oxidoreductase chain 1 (Fragment) ... [more]
D6MQR6_9PHAE7.150e-886.11NADH-ubiquinone oxidoreductase chain 1 (Fragment) ... [more]
D4HLG2_9PHAE7.150e-886.11NADH-ubiquinone oxidoreductase chain 1 (Fragment) ... [more]
D4HLI8_9PHAE7.150e-886.11NADH-ubiquinone oxidoreductase chain 1 (Fragment) ... [more]
I1T1F4_9PHAE9.470e-883.33NADH-ubiquinone oxidoreductase chain 1 (Fragment) ... [more]
E6ZEQ7_ECTSI1.250e-786.11NADH-ubiquinone oxidoreductase chain 1 n=66 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3448contigH-paniculata_contig3448:9636..12055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005270.1
Exons2
Model size1209
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3448.9195.1prot_H-paniculata_contig3448.9195.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3448 10125..10718 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.368968-UTR-H-paniculata_contig3448:9635..101241622930063.368968-UTR-H-paniculata_contig3448:9635..10124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3448 9636..10124 -
1691481131.678443-UTR-H-paniculata_contig3448:9635..101241691481131.678443-UTR-H-paniculata_contig3448:9635..10124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3448 9636..10124 -
1622930063.4015524-UTR-H-paniculata_contig3448:10718..107601622930063.4015524-UTR-H-paniculata_contig3448:10718..10760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3448 10719..10760 -
1691481131.7027442-UTR-H-paniculata_contig3448:10718..107601691481131.7027442-UTR-H-paniculata_contig3448:10718..10760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3448 10719..10760 -
1622930063.417184-UTR-H-paniculata_contig3448:11971..120551622930063.417184-UTR-H-paniculata_contig3448:11971..12055Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3448 11972..12055 -
1691481131.7168233-UTR-H-paniculata_contig3448:11971..120551691481131.7168233-UTR-H-paniculata_contig3448:11971..12055Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3448 11972..12055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.3864038-CDS-H-paniculata_contig3448:10124..107181622930063.3864038-CDS-H-paniculata_contig3448:10124..10718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3448 10125..10718 -
1691481131.6889162-CDS-H-paniculata_contig3448:10124..107181691481131.6889162-CDS-H-paniculata_contig3448:10124..10718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3448 10125..10718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3448.9195.1

>prot_H-paniculata_contig3448.9195.1 ID=prot_H-paniculata_contig3448.9195.1|Name=mRNA_H-paniculata_contig3448.9195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
MMTRRGVSSSVVFVYLLALWHTDQRQAHAFTLTPRTPAARAPGSPTVTNV
RGSSGGGTITTTTTVQTGGGRIFQCRFEDPTMCRHGREKGPSSSARIATL
LEASSSGKGPGRGGQEGEEDKYIIPGSGMRGVDTSQLSGSERRDAEWFER
TAGRESRGELQWFENPVAYVAVFVGVTGLVFVYAVLACFIPGYCLPN*
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mRNA from alignment at H-paniculata_contig3448:9636..12055-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3448.9195.1 ID=mRNA_H-paniculata_contig3448.9195.1|Name=mRNA_H-paniculata_contig3448.9195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2420bp|location=Sequence derived from alignment at H-paniculata_contig3448:9636..12055- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTTGCTGTGCACAAAGACAAGCCCTTTGGCAGCGCATCGGTCGTCTAC
TTTTTCCTTTTATTTCTTGGGCGCGTTTCTTGAGGTGAGGTGCACTCAAG
AGATGGGTTCGACTCTGTGTGCATACATGCACATCGTGGACAAGTTGAAG
TACTCGAAATATGTATGTGAGCACCGTGGTACATGATGTACCGGTGTCCT
CTCTACAGACCTATACTGAAATATTCCTTGACAATTCTGCCAGAGATTCG
GTCGGGTGAGCATTCGCTGGCACCCCCCCTTGTCTGTCATTTCCATTGTG
TGTCACTTTGCTCATGAATATTTGTTGAGTAAAGTGGGACTGGAAACAGG
AGCGGGAAGGGAGGATAGTAGATTCTTTGTCAACGCTCTAACTTCTACAT
CTCGAGCGTTTCTTATGCTGACAGTTTTTTTCTAAAACAGTAGGCGAGTG
GGCCACAAAACAGCAACTACAGGTCCATCTGCCATCGGATCGGATGCGTT
GACTGTCTATAAATAGTCCCGCACGTGCCTTACTCTTTACTGCACTAGGA
ACTGGGAAGCAGTAGCATGACAATCGCGCCTGCTTTTGATTCCCAACATG
GTACATGTGAAGGTATCGATAATGAAGTCTGGAGACATTAGCCCAACGCA
TGTATCGCAGTTCCTGAACTGTAGTTGTGCCACCGTTTTCAGTGACTATT
TTATAGACGAAAGATATTTGAATTATGAATAGGAGGAAAATGTGGGATCC
TATTCGTACTGGTATACGATGTACATGTCAAAGGGTTCGGAGTTCGACCT
CTCCGTGCTTCATGTCGCCCATGATCAGGCCTCGTGGGCTTTCACGCCTG
AAGGGAAAATCTGCATGTTGCAGTTTTGCGCACTCTAGGTAGAGTTGCTG
GATCGTCAGTCCCACTCCCCTCACGTCACGATTTTGAGTAGAATCCTCTC
TTGCTAGACTAGATTTCATGGACATACGCCAGTACATCATATTTGACGGT
GTCATGCTGCAGCGACAATGTACGAAACAGTTGATGGTAAGAAGGCACGG
CTCTTTTTGTACGGGGCGTTATACTGCAGGATAATCAGACGTGTATTTGA
CCAGCAGTCTGCTCGTTGAGTGGAGCCAAAAGTTGATAAAGAGTTCGTAT
TTATACGATGCTGTGGCAGCAACATATCAATATCACATATATCCTCCCTA
ACCGCGTGCTGCTGTGTGAACTACTAAGAGCACCCATGCCTATCCCACGT
CCCCGCCCTTGCCTACTGTTTTTTTTTCGCCCTTAAAACGCGGAGACGAA
CCTCAAAATACACCAACATAACACCGTCAAGTGAATCATGATGACCAGGC
GTGGAGTCTCCTCCTCGGTAGTGTTCGTCTACCTTCTCGCACTTTGGCAC
ACCGATCAACGTCAGGCACACGCATTCACGCTAACGCCCCGCACCCCGGC
GGCACGAGCGCCAGGCTCACCAACGGTGACCAACGTTCGAGGCAGCAGCG
GCGGCGGCACCATCACCACCACCACCACCGTACAGACCGGTGGAGGTCGC
ATCTTCCAGTGCCGATTTGAAGATCCCACAATGTGCCGCCATGGGAGAGA
AAAGGGACCCTCGTCCTCGGCGCGAATAGCCACGCTGTTGGAAGCCAGCA
GCAGTGGGAAGGGTCCCGGACGTGGGGGCCAGGAAGGAGAGGAGGACAAA
TATATCATCCCCGGGAGTGGGATGCGTGGGGTGGACACGAGCCAGTTGAG
CGGAAGCGAACGGCGAGATGCGGAGTGGTTCGAACGCACGGCCGGGCGTG
AGTCGCGCGGCGAGCTACAGTGGTTTGAGAACCCCGTGGCGTACGTCGCG
GTGTTTGTGGGGGTTACGGGGCTCGTGTTCGTCTACGCGGTGTTGGCGTG
TTTCATTCCGGGCTATTGTCTCCCCAATTGAATCTATGGCGTGCAACGTT
GGACTGTTTGTCTTTTTCCATGGAGAAAAATATAGCGATTGTGCTCATCC
CTGAAGAATGAGTATGTATATACGGAGCACGAGGAAACTACATCGGGCTG
CGGCATAACCCTGGGCAACTATTAAGAATGTGAAGAGCACCTGAGTTCTG
CTTTCATGATGCAGTGCAGATAAAATCGTTGACGCGCTTCGTGGGTGCCC
TGAGCTTTGGGGGGAGCGCGGTGATTATTTCTGTGTTCAACGCAGGGCTG
TTCATTTATTTTATATGAGCAGAACGTAAAATTATGGGTTCTATACAACG
TCGTAGAGGACCAAACTTAGGGTTAGGGTTAACCCAATGTTATTATTGGC
TATATGGGGTTACTTCAATCATTAGCTGACGGCCTTAAACGTTTTGTTAA
AGAGACTATTTTGCCTACAAATGCAAATCTTGTTCTTTTTTGTTATTGCA
ATCAGGGCGGGAGTCCTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3448:9636..12055-

>mRNA_H-paniculata_contig3448.9195.1 ID=mRNA_H-paniculata_contig3448.9195.1|Name=mRNA_H-paniculata_contig3448.9195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig3448:9636..12055- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGACCAGGCGTGGAGTCTCCTCCTCGGTAGTGTTCGTCTACCTTCT
CGCACTTTGGCACACCGATCAACGTCAGGCACACGCATTCACGCTAACGC
CCCGCACCCCGGCGGCACGAGCGCCAGGCTCACCAACGGTGACCAACGTT
CGAGGCAGCAGCGGCGGCGGCACCATCACCACCACCACCACCGTACAGAC
CGGTGGAGGTCGCATCTTCCAGTGCCGATTTGAAGATCCCACAATGTGCC
GCCATGGGAGAGAAAAGGGACCCTCGTCCTCGGCGCGAATAGCCACGCTG
TTGGAAGCCAGCAGCAGTGGGAAGGGTCCCGGACGTGGGGGCCAGGAAGG
AGAGGAGGACAAATATATCATCCCCGGGAGTGGGATGCGTGGGGTGGACA
CGAGCCAGTTGAGCGGAAGCGAACGGCGAGATGCGGAGTGGTTCGAACGC
ACGGCCGGGCGTGAGTCGCGCGGCGAGCTACAGTGGTTTGAGAACCCCGT
GGCGTACGTCGCGGTGTTTGTGGGGGTTACGGGGCTCGTGTTCGTCTACG
CGGTGTTGGCGTGTTTCATTCCGGGCTATTGTCTCCCCAATTGAATGATG
ACCAGGCGTGGAGTCTCCTCCTCGGTAGTGTTCGTCTACCTTCTCGCACT
TTGGCACACCGATCAACGTCAGGCACACGCATTCACGCTAACGCCCCGCA
CCCCGGCGGCACGAGCGCCAGGCTCACCAACGGTGACCAACGTTCGAGGC
AGCAGCGGCGGCGGCACCATCACCACCACCACCACCGTACAGACCGGTGG
AGGTCGCATCTTCCAGTGCCGATTTGAAGATCCCACAATGTGCCGCCATG
GGAGAGAAAAGGGACCCTCGTCCTCGGCGCGAATAGCCACGCTGTTGGAA
GCCAGCAGCAGTGGGAAGGGTCCCGGACGTGGGGGCCAGGAAGGAGAGGA
GGACAAATATATCATCCCCGGGAGTGGGATGCGTGGGGTGGACACGAGCC
AGTTGAGCGGAAGCGAACGGCGAGATGCGGAGTGGTTCGAACGCACGGCC
GGGCGTGAGTCGCGCGGCGAGCTACAGTGGTTTGAGAACCCCGTGGCGTA
CGTCGCGGTGTTTGTGGGGGTTACGGGGCTCGTGTTCGTCTACGCGGTGT
TGGCGTGTTTCATTCCGGGCTATTGTCTCCCCAATTGA
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