mRNA_H-paniculata_contig34442.9187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34442.9187.1
Unique NamemRNA_H-paniculata_contig34442.9187.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Match: D7G4C2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4C2_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 8.160e-37
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 WRFNVVMVLISMFFAMMLTNWGDINTDGESDDPKQGWTAMWLTTGGQWVCFLLYAWSLIAPRMFPDRDFA 210
            WRFNVVMVLISMFF MMLTNWGDIN DGES DPK GWTAMWLTT GQWVC+++YAW+L+AP +FPDRDF+
Sbjct:  398 WRFNVVMVLISMFFGMMLTNWGDINEDGESSDPKNGWTAMWLTTTGQWVCYIIYAWTLVAPLVFPDRDFS 467
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BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Match: A0A836CG76_9STRA (Serine incorporator/TMS membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG76_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.910e-26
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 WRFNVVMVLISMFFAMMLTNWGDINTDGES-------DDPKQGWTAMWLTTGGQWVCFLLYAWSLIAPRMFPDRDFA 210
            W+FN+VM+L+SMFF MMLTNWG + +D  S        DPK G  AMWLT  GQW C LLY W+L+AP++FPDRDF+
Sbjct:  377 WKFNIVMILLSMFFGMMLTNWGVVQSDSSSIENPATYSDPKNGEAAMWLTAAGQWACMLLYTWTLVAPKLFPDRDFS 453
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BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Match: A0A7S2FQZ7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQZ7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.080e-20
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 WRFNVVMVLISMFFAMMLTNWGD----INTDGESDD--PKQGWTAMWLTTGGQWVCFLLYAWSLIAPRMFPDRDFA 210
            WRFNVVM LISM++ M+LTNW +     N DG+  D  P  G TAMW+     W+C LLY W+L+AP ++PDRDF+
Sbjct:   95 WRFNVVMTLISMYWCMVLTNWANPVTGTNEDGDVKDGSPTGGITAMWMNIVACWICVLLYIWTLVAPILYPDRDFS 170
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BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Match: A0A7S2BQB8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BQB8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.310e-18
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    4 RFNVVMVLISMFFAMMLTNWGDINTDGESDDPKQGWTAMWLTTGGQWVCFLLYAWSLIAPRMFPDRDFA 210
            +FN+ M+LI+M++ M+LT+WG+++       P  G  AMW+     W+C LLY W+L+APR+FPDRDF+
Sbjct:  358 KFNIAMMLIAMYWCMVLTDWGNVDRSSSGASPTNGKIAMWMNITASWICVLLYGWTLVAPRIFPDRDFS 426
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BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Match: A0A7S2FS67_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS67_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.690e-18
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 WRFNVVMVLISMFFAMMLTNWGD----INTDGESDD--PKQGWTAMWLTTGGQWVCFLLYAWSLIAPRMFPDRDFA 210
            WRFNVVM LISM++ M+LTNW +     N DG+  D  P  G TAMW+     W+C LLY W+L+AP ++PDRDF+
Sbjct:  475 WRFNVVMTLISMYWCMVLTNWANPVTGTNEDGDVKDGSPTGGITAMWMNIVACWICVLLYIWTLVAPILYPDRDFS 550
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BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Match: A0A7S2I2C9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I2C9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.950e-18
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 WRFNVVMVLISMFFAMMLTNWGDINTDGESDDPKQGWTAMWLTTGGQWVCFLLYAWSLIAPRMFPDRDFA 210
            W+ NV++ L+S ++AM LT WG I T G + +P  G  +MW+    QW+   LY W+L+APR+FPDRDF+
Sbjct:  404 WKLNVILALVSCWYAMALTGWGAIETGGNAANPDVGKASMWMIIASQWLVLTLYLWTLVAPRLFPDRDFS 473
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BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Match: A0A7R9WZ09_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WZ09_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.290e-18
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 WRFNVVMVLISMFFAMMLTNWGDINTDGESDDPKQGWTAMWLTTGGQWVCFLLYAWSLIAPRMFPDRDFA 210
            WR NV++ ++S +FAM LT WG I + G + +P+ G  +MW+    QW+  L+Y W+LIAPR+FPDRDF+
Sbjct:  467 WRLNVILAIVSCWFAMSLTGWGAIKSGGTAANPQVGDVSMWMIIVSQWLVLLMYLWTLIAPRVFPDRDFS 536
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BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Match: A0A7S3QC27_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QC27_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.320e-18
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 WRFNVVMVLISMFFAMMLTNWGDINTDGESDDPKQGWTAMWLTTGGQWVCFLLYAWSLIAPRMFPDRDFA 210
            W+ NV++ LI+ ++AM LT+WG I   G   +P+ G T+MW+  G QW+   LY W+L+AP++FPDRDF+
Sbjct:  396 WKLNVILALITCWYAMALTSWGSITDGGTVANPQVGRTSMWMIIGSQWLMVALYLWTLLAPKLFPDRDFS 465
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BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Match: A0A7S3P415_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P415_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.980e-18
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 WRFNVVMVLISMFFAMMLTNWGDINTDGESDDPKQGWTAMWLTTGGQWVCFLLYAWSLIAPRMFPDRDFA 210
            W+ NV++  IS + AM LT+WG+I  +G   +P+ G   MW+  G QW+   LY W+L+APR+FPDRDF+
Sbjct:  460 WKLNVMLAAISCWMAMSLTSWGEIAAEGNLANPQVGRVGMWIIVGSQWIVLTLYLWTLVAPRIFPDRDFS 529
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BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Match: A0A7S2RGK7_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGK7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 9.570e-18
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    7 FNVVMVLISMFFAMMLTNWGDINTDGESDDPKQGWTAMWLTTGGQWVCFLLYAWSLIAPRMFPDRDFA 210
            FN+VM+LI  ++ M+LTNWGD +    +  P  G   MW+     WVC LLY WSL+AP +FPDRDF+
Sbjct:  380 FNLVMLLICQYWCMVLTNWGDSSASNSNSSPAAGDVVMWMNISASWVCCLLYIWSLVAPMIFPDRDFS 447
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34442.9187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4C2_ECTSI8.160e-3781.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG76_9STRA2.910e-2658.44Serine incorporator/TMS membrane protein n=1 Tax=T... [more]
A0A7S2FQZ7_9STRA4.080e-2052.63Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2BQB8_9STRA1.310e-1846.38Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2FS67_9STRA1.690e-1852.63Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2I2C9_9STRA3.950e-1847.14Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7R9WZ09_9STRA4.290e-1848.57Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S3QC27_9STRA5.320e-1847.14Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S3P415_9STRA7.980e-1847.14Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A7S2RGK7_9STRA9.570e-1850.00Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34442contigH-paniculata_contig34442:2067..2279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue1.9e-26
Seed eggNOG ortholog2880.D7G4C2
Preferred nameSERINC3
Hectar predicted targeting categorysignal peptide
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002252,GO:0002376,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006575,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006658,GO:0006665,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006950,GO:0006952,GO:0006955,GO:0007272,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008324,GO:0008366,GO:0008509,GO:0008514,GO:0008610,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009597,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015194,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015825,GO:0015849,GO:0016020,GO:0016021,GO:0016053,GO:0019637,GO:0019752,GO:0019899,GO:0022857,GO:0022889,GO:0023051,GO:0023056,GO:0030148,GO:0030674,GO:0031090,GO:0031224,GO:0031984,GO:0032329,GO:0032501,GO:0032502,GO:0034220,GO:0042175,GO:0042552,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044085,GO:0044091,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046394,GO:0046467,GO:0046486,GO:0046942,GO:0046943,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051607,GO:0051704,GO:0051707,GO:0055085,GO:0060090,GO:0065007,GO:0065009,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080134,GO:0080135,GO:0098542,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098827,GO:0098852,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902235,GO:1902237,GO:1902475,GO:1902531,GO:1902533,GO:1903825,GO:1904217,GO:1904219,GO:1904220,GO:1904222,GO:1905039,GO:1905897,GO:1905898,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.serine transport
EggNOG OGsKOG2592@1,KOG2592@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930062.5600562-CDS-H-paniculata_contig34442:2066..22611622930062.5600562-CDS-H-paniculata_contig34442:2066..2261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34442 2067..2261 -
1691481131.3684614-CDS-H-paniculata_contig34442:2066..22611691481131.3684614-CDS-H-paniculata_contig34442:2066..2261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34442 2067..2261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930062.5735674-UTR-H-paniculata_contig34442:2261..22791622930062.5735674-UTR-H-paniculata_contig34442:2261..2279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34442 2262..2279 -
1691481131.3781765-UTR-H-paniculata_contig34442:2261..22791691481131.3781765-UTR-H-paniculata_contig34442:2261..2279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34442 2262..2279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34442.9187.1prot_H-paniculata_contig34442.9187.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34442 2067..2261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34442.9187.1

>prot_H-paniculata_contig34442.9187.1 ID=prot_H-paniculata_contig34442.9187.1|Name=mRNA_H-paniculata_contig34442.9187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MVLISMFFAMMLTNWGDINTDGESDDPKQGWTAMWLTTGGQWVCFLLYAW
SLIAPRMFPDRDFA*
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mRNA from alignment at H-paniculata_contig34442:2067..2279-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34442.9187.1 ID=mRNA_H-paniculata_contig34442.9187.1|Name=mRNA_H-paniculata_contig34442.9187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig34442:2067..2279- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAGATTCAACGTGGTGATGGTGCTTATCTCCATGTTCTTTGCTATGAT
GCTCACCAATTGGGGAGATATCAACACCGATGGAGAGTCAGACGACCCGA
AGCAAGGCTGGACGGCCATGTGGCTCACCACAGGCGGGCAGTGGGTTTGC
TTCCTGCTTTACGCCTGGAGCTTAATCGCCCCGCGTATGTTCCCTGATCG
TGATTTCGCCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig34442:2067..2279-

>mRNA_H-paniculata_contig34442.9187.1 ID=mRNA_H-paniculata_contig34442.9187.1|Name=mRNA_H-paniculata_contig34442.9187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig34442:2067..2279- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTTATCTCCATGTTCTTTGCTATGATGCTCACCAATTGGGGAGA
TATCAACACCGATGGAGAGTCAGACGACCCGAAGCAAGGCTGGACGGCCA
TGTGGCTCACCACAGGCGGGCAGTGGGTTTGCTTCCTGCTTTACGCCTGG
AGCTTAATCGCCCCGCGTATGTTCCCTGATCGTGATTTCGCCTGAATGGT
GCTTATCTCCATGTTCTTTGCTATGATGCTCACCAATTGGGGAGATATCA
ACACCGATGGAGAGTCAGACGACCCGAAGCAAGGCTGGACGGCCATGTGG
CTCACCACAGGCGGGCAGTGGGTTTGCTTCCTGCTTTACGCCTGGAGCTT
AATCGCCCCGCGTATGTTCCCTGATCGTGATTTCGCCTGA
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