mRNA_H-paniculata_contig34435.9184.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34435.9184.1
Unique NamemRNA_H-paniculata_contig34435.9184.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34435.9184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34435contigH-paniculata_contig34435:1706..2265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930062.3437097-CDS-H-paniculata_contig34435:1705..22631622930062.3437097-CDS-H-paniculata_contig34435:1705..2263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34435 1706..2263 +
1691481131.2842984-CDS-H-paniculata_contig34435:1705..22631691481131.2842984-CDS-H-paniculata_contig34435:1705..2263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34435 1706..2263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34435.9184.1prot_H-paniculata_contig34435.9184.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34435 1706..2263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34435.9184.1

>prot_H-paniculata_contig34435.9184.1 ID=prot_H-paniculata_contig34435.9184.1|Name=mRNA_H-paniculata_contig34435.9184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
ASTDTTDELRADGVFPPDSRPFRFWRLPHGRQAGPSDFSTTKSEVFVADT
GVSETPCPLLPSQRDHLIRIRNHTLTNSQPEDFKTDGTAPVTPCPFLSSA
RKSRNLLHPGAVSVPEVGPSSPGAPLRCGYSGWSQRGYRLPPASAPAVGP
VHRVASSDEGEQELTALVFPTSPSHHRVSPSCIART
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mRNA from alignment at H-paniculata_contig34435:1706..2265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34435.9184.1 ID=mRNA_H-paniculata_contig34435.9184.1|Name=mRNA_H-paniculata_contig34435.9184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=560bp|location=Sequence derived from alignment at H-paniculata_contig34435:1706..2265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGTACTGACACTACTGATGAATTGCGGGCAGATGGGGTATTTCCCCC
CGACTCTCGTCCTTTTCGCTTTTGGCGTTTGCCTCATGGCCGCCAGGCTG
GTCCATCAGACTTTTCAACAACTAAATCGGAGGTTTTTGTGGCCGACACC
GGCGTCTCTGAAACGCCATGTCCGCTTCTTCCCTCTCAGCGGGACCATTT
AATTCGTATCCGCAATCACACTTTAACAAATTCACAGCCAGAGGACTTCA
AAACGGACGGCACTGCACCAGTTACCCCATGTCCGTTTCTTTCCTCAGCG
CGGAAAAGCCGCAATCTCCTGCACCCTGGAGCGGTATCTGTGCCGGAGGT
TGGTCCCTCCAGCCCAGGTGCACCTTTGAGGTGCGGGTATAGTGGCTGGT
CACAGCGGGGATATAGGCTTCCCCCCGCTAGTGCCCCCGCCGTCGGTCCT
GTTCACCGTGTTGCCAGCTCTGACGAAGGCGAGCAGGAATTGACCGCTCT
TGTTTTCCCCACATCACCTTCGCATCACCGTGTTTCTCCCTCGTGTATAG
CACGCACGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig34435:1706..2265+

>mRNA_H-paniculata_contig34435.9184.1 ID=mRNA_H-paniculata_contig34435.9184.1|Name=mRNA_H-paniculata_contig34435.9184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig34435:1706..2265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGTACTGACACTACTGATGAATTGCGGGCAGATGGGGTATTTCCCCC
CGACTCTCGTCCTTTTCGCTTTTGGCGTTTGCCTCATGGCCGCCAGGCTG
GTCCATCAGACTTTTCAACAACTAAATCGGAGGTTTTTGTGGCCGACACC
GGCGTCTCTGAAACGCCATGTCCGCTTCTTCCCTCTCAGCGGGACCATTT
AATTCGTATCCGCAATCACACTTTAACAAATTCACAGCCAGAGGACTTCA
AAACGGACGGCACTGCACCAGTTACCCCATGTCCGTTTCTTTCCTCAGCG
CGGAAAAGCCGCAATCTCCTGCACCCTGGAGCGGTATCTGTGCCGGAGGT
TGGTCCCTCCAGCCCAGGTGCACCTTTGAGGTGCGGGTATAGTGGCTGGT
CACAGCGGGGATATAGGCTTCCCCCCGCTAGTGCCCCCGCCGTCGGTCCT
GTTCACCGTGTTGCCAGCTCTGACGAAGGCGAGCAGGAATTGACCGCTCT
TGTTTTCCCCACATCACCTTCGCATCACCGTGTTTCTCCCTCGTGTATAG
CACGCACGGCAAGTACTGACACTACTGATGAATTGCGGGCAGATGGGGTA
TTTCCCCCCGACTCTCGTCCTTTTCGCTTTTGGCGTTTGCCTCATGGCCG
CCAGGCTGGTCCATCAGACTTTTCAACAACTAAATCGGAGGTTTTTGTGG
CCGACACCGGCGTCTCTGAAACGCCATGTCCGCTTCTTCCCTCTCAGCGG
GACCATTTAATTCGTATCCGCAATCACACTTTAACAAATTCACAGCCAGA
GGACTTCAAAACGGACGGCACTGCACCAGTTACCCCATGTCCGTTTCTTT
CCTCAGCGCGGAAAAGCCGCAATCTCCTGCACCCTGGAGCGGTATCTGTG
CCGGAGGTTGGTCCCTCCAGCCCAGGTGCACCTTTGAGGTGCGGGTATAG
TGGCTGGTCACAGCGGGGATATAGGCTTCCCCCCGCTAGTGCCCCCGCCG
TCGGTCCTGTTCACCGTGTTGCCAGCTCTGACGAAGGCGAGCAGGAATTG
ACCGCTCTTGTTTTCCCCACATCACCTTCGCATCACCGTGTTTCTCCCTC
GTGTATAGCACGCACG
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