mRNA_H-paniculata_contig34425.9182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34425.9182.1
Unique NamemRNA_H-paniculata_contig34425.9182.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Match: A0A7S2XXF5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXF5_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.940e-53
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 QSTWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 285
            Q+TW+KVNRDFGSIFSTLLPGTSAKL PPEGGTV DGLEVKVAFG VWKE+LTELSGGQRSLLALSL+LSLLLFKPAPMYILDE+DAALDLSHTQ
Sbjct:   27 QTTWVKVNRDFGSIFSTLLPGTSAKLDPPEGGTVLDGLEVKVAFGKVWKESLTELSGGQRSLLALSLVLSLLLFKPAPMYILDEIDAALDLSHTQ 121
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BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Match: A0A836CJV5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV5_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.950e-52
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 QSTWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 285
            Q+TW+KVNRDFGSIFSTLLPGTSAKL+PPEGGT  DGLEVKVAFGSVWKE+LTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ
Sbjct:  175 QTTWVKVNRDFGSIFSTLLPGTSAKLEPPEGGTALDGLEVKVAFGSVWKESLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 269
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BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Match: A0A7S3XPQ9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPQ9_HETAK)

HSP 1 Score: 171 bits (434), Expect = 4.320e-50
Identity = 86/95 (90.53%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 QSTWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 285
            Q+TW+KVNRDFGSIF TLLPGTSAKL PP+GG+V DGLEVKVAFG+VWKE+LTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ
Sbjct:  202 QTTWVKVNRDFGSIFGTLLPGTSAKLDPPQGGSVLDGLEVKVAFGNVWKESLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 296
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BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Match: T1DFG2_SILLA (Structural maintenance of chromosomes protein 2-2 (Fragment) n=1 Tax=Silene latifolia TaxID=37657 RepID=T1DFG2_SILLA)

HSP 1 Score: 162 bits (409), Expect = 1.730e-49
Identity = 80/93 (86.02%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:    7 TWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 285
            TW+KVN DFGSIFSTLLPGT+AKL+PPEGGT  DGLEV+VAFG VWK++L+ELSGGQRSLLALSLIL+LLLFKPAP+YILDEVDAALDLSHTQ
Sbjct:    3 TWVKVNSDFGSIFSTLLPGTTAKLEPPEGGTFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQ 95
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BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Match: A0A836CJQ0_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ0_9STRA)

HSP 1 Score: 176 bits (446), Expect = 4.410e-49
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 QSTWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 285
            Q+TW+KVNRDFGSIFSTLLPGTSAKL+PPEGGT  DGLEVKVAFGSVWKE+LTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ
Sbjct: 1053 QTTWVKVNRDFGSIFSTLLPGTSAKLEPPEGGTALDGLEVKVAFGSVWKESLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 1147
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BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Match: A0A7S1H4H2_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4H2_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.800e-48
Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 QSTWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 285
            + TW+KVNRDFGS+FSTLLPGTSAKL+PPEG    +GLEVKVAFG+VWKE+L+ELSGGQRSL+ALSLILSLLLFKPAPMYILDEVDAALDLSHTQ
Sbjct:   25 ERTWVKVNRDFGSMFSTLLPGTSAKLEPPEGLEAWEGLEVKVAFGNVWKESLSELSGGQRSLIALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 119
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BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Match: A0A6H5K638_9PHAE (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K638_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.840e-48
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 QSTWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 285
            Q+TW+KVNRDFGSIFSTLLPGTSAKLQPPEG TV  GLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ
Sbjct: 1046 QTTWLKVNRDFGSIFSTLLPGTSAKLQPPEGETVMAGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 1140
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BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Match: A0A7S2H5V1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H5V1_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.930e-48
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 QSTWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 285
            + TWIKVNRDFGSIFSTLLPGTSAKL PPEGGTV DGLEVKVAFGSVWKE+L+ELSGGQRSL+ALSLILSLLLFKPAPMYILDEVDAALDLSHTQ
Sbjct:  700 EKTWIKVNRDFGSIFSTLLPGTSAKLDPPEGGTVLDGLEVKVAFGSVWKESLSELSGGQRSLIALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 794
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BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Match: A0A7S3DSR2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DSR2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.070e-47
Identity = 83/95 (87.37%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:    1 QSTWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 285
            +STW KVN DFGSIFSTLLPGTSAKL+PPEG    +GLEVKVAFG VWKE+L+ELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ
Sbjct:   94 ESTWKKVNGDFGSIFSTLLPGTSAKLEPPEGMAAWEGLEVKVAFGDVWKESLSELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 188
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BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Match: A0A097PJ81_SARHE (Structural maintenance of chromosomes protein 2 (Fragment) n=1 Tax=Saruma henryi TaxID=13258 RepID=A0A097PJ81_SARHE)

HSP 1 Score: 160 bits (405), Expect = 4.770e-47
Identity = 80/93 (86.02%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:    7 TWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKETLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQ 285
            TW+KVN+DFGSIFSTLLPGT AKL+PPEG T  DGLEV+VAFGSVWK++L+ELSGGQRSLLALSLIL+LLLFKPAP+YILDEVDAALDLSHTQ
Sbjct:  150 TWVKVNKDFGSIFSTLLPGTMAKLEPPEGCTFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQ 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34425.9182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XXF5_9STRA1.940e-5391.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CJV5_9STRA2.950e-5293.68P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3XPQ9_HETAK4.320e-5090.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
T1DFG2_SILLA1.730e-4986.02Structural maintenance of chromosomes protein 2-2 ... [more]
A0A836CJQ0_9STRA4.410e-4993.68Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S1H4H2_9STRA2.800e-4885.26Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A6H5K638_9PHAE2.840e-4894.74Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2H5V1_9STRA2.930e-4892.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3DSR2_9STRA4.070e-4787.37Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A097PJ81_SARHE4.770e-4786.02Structural maintenance of chromosomes protein 2 (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34425contigH-paniculata_contig34425:1255..2065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue1.1e-39
Seed eggNOG ortholog157072.XP_008869542.1
Preferred nameSMC2
KEGG koko:K06674
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010032,GO:0010564,GO:0010605,GO:0010948,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034506,GO:0034641,GO:0035327,GO:0035639,GO:0036094,GO:0036292,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0045595,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1990837,GO:2000241,GO:2000242,GO:2000736
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0933@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930062.176573-CDS-H-paniculata_contig34425:1254..14831622930062.176573-CDS-H-paniculata_contig34425:1254..1483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34425 1255..1483 +
1691481131.2074482-CDS-H-paniculata_contig34425:1254..14831691481131.2074482-CDS-H-paniculata_contig34425:1254..1483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34425 1255..1483 +
1622930062.1945574-CDS-H-paniculata_contig34425:1985..20651622930062.1945574-CDS-H-paniculata_contig34425:1985..2065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34425 1986..2065 +
1691481131.2199142-CDS-H-paniculata_contig34425:1985..20651691481131.2199142-CDS-H-paniculata_contig34425:1985..2065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34425 1986..2065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34425.9182.1prot_H-paniculata_contig34425.9182.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34425 1255..2065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34425.9182.1

>prot_H-paniculata_contig34425.9182.1 ID=prot_H-paniculata_contig34425.9182.1|Name=mRNA_H-paniculata_contig34425.9182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
QSTWIKVNRDFGSIFSTLLPGTSAKLQPPEGGTVTDGLEVKVAFGSVWKE
TLTELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQVNERT
TK*
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mRNA from alignment at H-paniculata_contig34425:1255..2065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34425.9182.1 ID=mRNA_H-paniculata_contig34425.9182.1|Name=mRNA_H-paniculata_contig34425.9182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=811bp|location=Sequence derived from alignment at H-paniculata_contig34425:1255..2065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGTACCTGGATCAAGGTAAATCGCGACTTCGGCAGCATTTTCTCTAC
GCTGCTCCCGGGAACCTCTGCCAAGCTGCAGCCGCCGGAAGGGGGCACGG
TGACGGACGGACTGGAGGTCAAGGTGGCCTTTGGGAGCGTGTGGAAGGAG
ACTTTGACTGAGCTTTCCGGCGGGCAGCGATCATTGTTGGCGCTATCGCT
CATCCTGTCTCTTCTTCTGTTTAAGCCTGGTGGGAGCAGTGCAGCACTCT
TGATTTAGTGGAATGACACTAACGCCGTGTAACTAACGTCTGGTATAGTC
GAGTTTGTCTGTTAGCGTTGCGAGCACTGTACTAGCCATGCTCCAGGCAC
CATTTTCTCTCGTGTTCCAAGTGGAGATTGGATATTAGGTCCAGACCCGC
GGTCTTCTTGATAAATTCTTCTTTTTTTTTTCCTCCTATATGTTTTGAAG
ATAACAATTTAATACGTTGGATGATGACATATAGGGTTCTTTTTTGTAGC
ATTACCTAGAATAAGAAGTCCGTATTTCTTGTAAAAGCGGAATTGTCATG
TTTCAGGATTGTGCTTCTGTCACCCCTAAATAAGTGCCATTGTCTAGTGT
GTGTACGTACCTTTGACACCCCCTTTAGGCCAACCTCCCATCGTCATCCT
CATGACCCCCCCCCTTCCTCTCCCTCCTGTCCCTGTTTCCCCTTTCGATG
CTGCTCTGTTCTCGCGAATGTTTGCGTGCAGCGCCAATGTACATCCTCGA
TGAAGTGGACGCTGCGCTGGACCTCAGTCACACGCAGGTAAATGAACGAA
CAACAAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig34425:1255..2065+

>mRNA_H-paniculata_contig34425.9182.1 ID=mRNA_H-paniculata_contig34425.9182.1|Name=mRNA_H-paniculata_contig34425.9182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig34425:1255..2065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGTACCTGGATCAAGGTAAATCGCGACTTCGGCAGCATTTTCTCTAC
GCTGCTCCCGGGAACCTCTGCCAAGCTGCAGCCGCCGGAAGGGGGCACGG
TGACGGACGGACTGGAGGTCAAGGTGGCCTTTGGGAGCGTGTGGAAGGAG
ACTTTGACTGAGCTTTCCGGCGGGCAGCGATCATTGTTGGCGCTATCGCT
CATCCTGTCTCTTCTTCTGTTTAAGCCTGCAGAGTACCTGGATCAAGGTA
AATCGCGACTTCGGCAGCATTTTCTCTACGCTGCTCCCGGGAACCTCTGC
CAAGCTGCAGCCGCCGGAAGGGGGCACGGTGACGGACGGACTGGAGGTCA
AGGTGGCCTTTGGGAGCGTGTGGAAGGAGACTTTGACTGAGCTTTCCGGC
GGGCAGCGATCATTGTTGGCGCTATCGCTCATCCTGTCTCTTCTTCTGTT
TAAGCCTGCGCCAATGTACATCCTCGATGAAGTGGACGCTGCGCTGGACC
TCAGTCACACGCAGGTAAATGAACGAACAACAAAATGACGCCAATGTACA
TCCTCGATGAAGTGGACGCTGCGCTGGACCTCAGTCACACGCAGGTAAAT
GAACGAACAACAAAATGA
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