mRNA_H-paniculata_contig34378.9175.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Match: D7G373_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G373_ECTSI) HSP 1 Score: 224 bits (570), Expect = 2.440e-65 Identity = 115/126 (91.27%), Postives = 122/126 (96.83%), Query Frame = 1
Query: 7 VVFATETLAAGVNMPARATVITTLSKRIDTGVVKLTPSQLLQMGGRAGRRGKDVSGSVVLMRSRFEDCVEAHRLLLAPMDGIESQFKSSYGMAVGVLRTRDMASAKVLVEKSFGNFLRMKQLGPLQ 384
VVFATETLAAGVNMPARATVITTLSKRIDTG+VKL PSQLLQMGGRAGRRGKD SGSVVLMRSRFEDC+EAHRLLL+PMDGIESQFKSSYGMAVGVLRTRDMASA+VLVEKSFGNF+R K++GP Q
Sbjct: 710 VVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGRAGRRGKDSSGSVVLMRSRFEDCIEAHRLLLSPMDGIESQFKSSYGMAVGVLRTRDMASARVLVEKSFGNFVRRKRVGPAQ 835
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Match: A0A835Z819_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA) HSP 1 Score: 180 bits (457), Expect = 4.010e-50 Identity = 92/127 (72.44%), Postives = 109/127 (85.83%), Query Frame = 1
Query: 4 QVVFATETLAAGVNMPARATVITTLSKRIDTGVVKLTPSQLLQMGGRAGRRGKDVSGSVVLMRSRFEDCVEAHRLLLAPMDGIESQFKSSYGMAVGVLRTRDMASAKVLVEKSFGNFLRMKQLGPLQ 384
+VVFATETLAAGVNMPAR+TVI+ LSKR DTG++ L PSQLLQM GRAGRRG DV G+VV+MRSRFED +AHRLLL P+D IES+F+SSY MAV +L+TRD+ SAK LVE SFGN+L+MK+L P Q
Sbjct: 550 KVVFATETLAAGVNMPARSTVISVLSKRGDTGIMPLLPSQLLQMAGRAGRRGLDVLGNVVVMRSRFEDVTDAHRLLLLPLDSIESKFRSSYSMAVNILKTRDLGSAKTLVEMSFGNYLQMKRLSPAQ 676
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Match: K8YRA8_NANGC (Type iii restriction res subunit n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRA8_NANGC) HSP 1 Score: 162 bits (411), Expect = 1.840e-46 Identity = 86/128 (67.19%), Postives = 100/128 (78.12%), Query Frame = 1
Query: 1 IQVVFATETLAAGVNMPARATVITTLSKRIDTGVVKLTPSQLLQMGGRAGRRGKDVSGSVVLMRSRFEDCVEAHRLLLAPMDGIESQFKSSYGMAVGVLRTRDMASAKVLVEKSFGNFLRMKQLGPLQ 384
I+VVFATETLAAGVNMPARATVI+TLSK+I + L PSQLLQM GRAGRRGKD G VVLMRSR ED ++A LL AP+D I S F+SSY M V +LRTRD+ S K+LVE+SFGN+L+ LG Q
Sbjct: 125 IRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQ 252
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Match: W7TFJ8_9STRA (Dsh domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFJ8_9STRA) HSP 1 Score: 162 bits (411), Expect = 3.070e-44 Identity = 86/128 (67.19%), Postives = 100/128 (78.12%), Query Frame = 1
Query: 1 IQVVFATETLAAGVNMPARATVITTLSKRIDTGVVKLTPSQLLQMGGRAGRRGKDVSGSVVLMRSRFEDCVEAHRLLLAPMDGIESQFKSSYGMAVGVLRTRDMASAKVLVEKSFGNFLRMKQLGPLQ 384
I+VVFATETLAAGVNMPARATVI+TLSK+I + L PSQLLQM GRAGRRGKD G VVLMRSR ED ++A LL AP+D I S F+SSY M V +LRTRD+ S K+LVE+SFGN+L+ LG Q
Sbjct: 331 IRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQ 458
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Match: A0A4D9D0G8_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0G8_9STRA) HSP 1 Score: 162 bits (411), Expect = 6.410e-44 Identity = 86/128 (67.19%), Postives = 100/128 (78.12%), Query Frame = 1
Query: 1 IQVVFATETLAAGVNMPARATVITTLSKRIDTGVVKLTPSQLLQMGGRAGRRGKDVSGSVVLMRSRFEDCVEAHRLLLAPMDGIESQFKSSYGMAVGVLRTRDMASAKVLVEKSFGNFLRMKQLGPLQ 384
I+VVFATETLAAGVNMPARATVI+TLSK+I + L PSQLLQM GRAGRRGKD G VVLMRSR ED ++A LL AP+D I S F+SSY M V +LRTRD+ S K+LVE+SFGN+L+ LG Q
Sbjct: 589 IRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQ 716
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Match: S0F3W1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3W1_CHOCR) HSP 1 Score: 141 bits (355), Expect = 2.220e-36 Identity = 75/125 (60.00%), Postives = 97/125 (77.60%), Query Frame = 1
Query: 1 IQVVFATETLAAGVNMPARATVITTLSKRI-DTGVVKLTPSQLLQMGGRAGRRGKDVSGSVVLMRSRFEDCVEAHRLLLAPMDGIESQFKSSYGMAVGVLRTRDMASAKVLVEKSFGNFLRMKQL 372
I+VVFATETLAAG+NMPAR TVI++LSKR D G+V LT S++LQM GRAGRRGKDV G V++RSR E +EA ++L A +D ++S+F +YGM + +L R + AK LV++SFGNFLR KQL
Sbjct: 512 IKVVFATETLAAGINMPARTTVISSLSKRAGDAGIVSLTTSEVLQMAGRAGRRGKDVLGHSVVLRSRNEGALEAFKVLTADVDALQSKFTPNYGMVLNLLSARPLEDAKKLVDRSFGNFLREKQL 636
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Match: A0A0G4EJS4_VITBC (Uncharacterized protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJS4_VITBC) HSP 1 Score: 138 bits (347), Expect = 2.660e-35 Identity = 74/123 (60.16%), Postives = 93/123 (75.61%), Query Frame = 1
Query: 1 IQVVFATETLAAGVNMPARATVITTLSKRIDTGVVKLTPSQLLQMGGRAGRRGKDVSGSVVLMRSRFEDCVEAHRLLLAPMDGIESQFKSSYGMAVGVLRTRDMASAKVLVEKSFGNFLRMKQ 369
I+V+FATETLAAGVNMPAR T IT L K G+ +L+ SQLLQM GRAGRRGKD GSVVL+RS D EA LLAP+D I+SQF+ +YG+A VLR RD++ ++ L+EKSFG FL+ ++
Sbjct: 494 IKVLFATETLAAGVNMPARTTAITVLRKYGSEGLTRLSTSQLLQMAGRAGRRGKDHEGSVVLIRSDRTDAREAAMTLLAPLDSIKSQFRITYGLATNVLRVRDLSKSRELIEKSFGVFLQARR 616
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Match: A0A7S1HEM1_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEM1_HEMAN) HSP 1 Score: 126 bits (317), Expect = 7.740e-34 Identity = 66/123 (53.66%), Postives = 87/123 (70.73%), Query Frame = 1
Query: 1 IQVVFATETLAAGVNMPARATVITTLSKRIDTGVVKLTPSQLLQMGGRAGRRGKDVSGSVVLMRSRFEDCVEAHRLLLAPMDGIESQFKSSYGMAVGVLRTRDMASAKVLVEKSFGNFLRMKQ 369
I+VV ATETLAAG+NMPAR+TVIT+LSKR G+ LT ++L QM GRAGRRGKD G V+MRSR+E EA +++ D ++S+F SYGM + +L R M+ K VE SFG+FL ++
Sbjct: 102 IKVVTATETLAAGINMPARSTVITSLSKRTSDGINSLTSNELRQMSGRAGRRGKDTVGHAVMMRSRWEGAPEAFTIVIQEPDPLKSKFSPSYGMVLSLLSVRPMSECKEFVENSFGSFLAQRE 224
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Match: A0A2V3J1X3_9FLOR (DExH-box ATP-dependent RNA helicase DExH15 chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1X3_9FLOR) HSP 1 Score: 134 bits (336), Expect = 8.060e-34 Identity = 71/124 (57.26%), Postives = 94/124 (75.81%), Query Frame = 1
Query: 1 IQVVFATETLAAGVNMPARATVITTLSKRI-DTGVVKLTPSQLLQMGGRAGRRGKDVSGSVVLMRSRFEDCVEAHRLLLAPMDGIESQFKSSYGMAVGVLRTRDMASAKVLVEKSFGNFLRMKQ 369
I+VVFATETLAAG+NMPAR TVI++LSKR D G LT S++LQM GRAGRRGKD G V++RSR E +EA ++L A +D +ES+F +YGM + +L +R + AK LV++SFGNFLR ++
Sbjct: 524 IKVVFATETLAAGINMPARTTVISSLSKRTGDIGFTNLTTSEVLQMAGRAGRRGKDTVGHSVILRSRNEGALEAFKVLTAGVDALESKFTPNYGMVLNLLSSRPLKDAKKLVDRSFGNFLRERE 647
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Match: A0A3C1LYW9_9CYAN (DEAD/DEAH box helicase n=1 Tax=Cyanobacteria bacterium UBA8156 TaxID=2055767 RepID=A0A3C1LYW9_9CYAN) HSP 1 Score: 131 bits (329), Expect = 6.880e-33 Identity = 70/119 (58.82%), Postives = 88/119 (73.95%), Query Frame = 1
Query: 1 IQVVFATETLAAGVNMPARATVITTLSKRIDTGVVKLTPSQLLQMGGRAGRRGKDVSGSVVLMRSRFEDCVEAHRLLLAPMDGIESQFKSSYGMAVGVLRTRDMASAKVLVEKSFGNFL 357
I+VVFATETLAAG+NMPAR TVI++LSKR D G LT S+ LQM GRAGRRG D G VV +++R+E ++A RL +A D + SQF SYGM + +L+T MA AK LVE+SFG +L
Sbjct: 340 IKVVFATETLAAGINMPARTTVISSLSKRTDRGHRALTASEFLQMAGRAGRRGMDAIGHVVTLQTRYEGPLDAERLAIAKADPLASQFTPSYGMVLNLLQTHPMARAKELVERSFGQYL 458 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34378.9175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34378.9175.1 >prot_H-paniculata_contig34378.9175.1 ID=prot_H-paniculata_contig34378.9175.1|Name=mRNA_H-paniculata_contig34378.9175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp IQVVFATETLAAGVNMPARATVITTLSKRIDTGVVKLTPSQLLQMGGRAGback to top mRNA from alignment at H-paniculata_contig34378:441..1670+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34378.9175.1 ID=mRNA_H-paniculata_contig34378.9175.1|Name=mRNA_H-paniculata_contig34378.9175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig34378:441..1670+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34378:441..1670+ >mRNA_H-paniculata_contig34378.9175.1 ID=mRNA_H-paniculata_contig34378.9175.1|Name=mRNA_H-paniculata_contig34378.9175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig34378:441..1670+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |