mRNA_H-paniculata_contig34314.9163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34314.9163.1
Unique NamemRNA_H-paniculata_contig34314.9163.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Match: A0A6H5K9J8_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9J8_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.540e-28
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1
Query:   16 VAKTRACLEDLMHSDEDMLGLLLTETMQLDEGEMLDPHRHSVVELLLENYHRQLVLVGHDVATMREEMESMQ 231
            +++TRACLE+LM SDEDMLGLLLTE  +L  G+MLD HRHSVVELLLENYHRQLVLVGHDVA M++EMES+Q
Sbjct:  413 LSQTRACLEELMQSDEDMLGLLLTEAKELRNGQMLDAHRHSVVELLLENYHRQLVLVGHDVAAMKQEMESLQ 484          
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Match: A0A836C9F9_9STRA (Magnesium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.850e-15
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   19 AKTRACLEDLMHSDEDMLGLLLTETMQLDEGEMLDPHRHSVVELLLENYHRQLVLVGHDVATMREEMESMQ 231
            A+ R CL DL+H+D+DML L+LT   +L  GEMLD  RH  VELLLENYHRQL +  ++++ + +E++S Q
Sbjct:  253 AEARRCLTDLLHNDDDMLDLMLTAKHELGPGEMLDETRHQEVELLLENYHRQLSITQNEISKLVQEVQSTQ 323          
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Match: A0A8J2SNL6_9STRA (Magnesium transporter n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNL6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.390e-10
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   19 AKTRACLE---DLMHSDEDMLGLLLTETMQLDEGEMLDPHRHSVVELLLENYHRQLVLVGHDVATMREEMES 225
            A+TR  L+   +L+ SDEDMLGLLL+E      G  +DP RH VVELLLE YHR+L  V  DVA +R ++++
Sbjct:  194 AETRQALQVLDELLASDEDMLGLLLSERRA---GTSVDPERHGVVELLLEAYHRRLSAVAGDVAELRGKVQA 262          
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Match: A0A7S2CAG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CAG0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.350e-8
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   34 CLEDLMHSDEDMLGLLLTETMQLDEGEMLDPHRHSVVELLLENYHRQLVL 183
            CL  L+H +EDM+GLLL+E  +   G +LD  RH ++EL+LENYHR+L+L
Sbjct:   94 CLNTLLHDEEDMVGLLLSERHRSGGG-VLDLGRHDMIELMLENYHRRLIL 142          
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Match: A0A7S2M7D7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2M7D7_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 5.050e-7
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   37 LEDLMHSDEDMLGLLLTETMQLD-EGEMLDPHRHSVVELLLENYHRQLVLVGHDVATMREEMESMQ 231
            ++ ++ S++DML LLL    Q +  GE LD   H  VEL+LENYHRQL L   DV +M+  ++S Q
Sbjct:   42 IQRVLDSEQDMLDLLLAARAQAEARGERLDTSLHDEVELMLENYHRQLELNLSDVKSMQRHVQSKQ 107          
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Match: A0A7S4HRH7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HRH7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.740e-7
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   34 CLEDLMHSDEDMLGLLLTETMQLD-EGEMLDPHRHSVVELLLENYHRQLVLVGHDVATMREEMESMQ 231
            CL  L+ +DEDMLGLLLTE  +   +GE L    H  VELL E Y RQL  V H+V  ++  ++S Q
Sbjct:  120 CLTHLLGNDEDMLGLLLTEKAKASSKGEHLRHEMHEAVELLFEEYARQLSNVLHEVHFLQRRVQSKQ 186          
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Match: A0A2R5GXE5_9STRA (Magnesium transporter n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXE5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.000e-6
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   25 TRACLEDLMHSDEDMLGLLLTETMQLDEGEMLDPHRHSVVELLLENYHRQLVLVGHDVATMREEMESMQ 231
            TR  L +++H++EDML +LL+ET   + G +    RH  VELLLENY  QL+ +  +   +R+ +ES Q
Sbjct:  394 TRNVLTEVLHNEEDMLAMLLSETYA-NSGVLPKRERHETVELLLENYCSQLIDISQEAYYLRKRVESTQ 461          
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Match: A0A6S8XKU5_9STRA (Magnesium transporter n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XKU5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.870e-6
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   34 CLEDLMHSDEDMLGLLLTETMQL-DEGEMLDPHRHSVVELLLENYHRQLVLVGHDVATMREEMESMQ 231
            CL  L+ ++EDMLGLLLTE     D GE +D  RH  VELLLE Y RQL  +  +   + ++++S Q
Sbjct:  342 CLTHLLGNEEDMLGLLLTERQAARDRGEEMDIRRHEDVELLLEEYARQLSYILAETNYLLKKVQSKQ 408          
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Match: A0A813IX34_POLGL (Magnesium transporter (Fragment) n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IX34_POLGL)

HSP 1 Score: 52.0 bits (123), Expect = 6.450e-6
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   31 ACLEDLMHSDEDMLGLLLTETMQLDEGEMLDPHRHSVVELLLENYHRQLVLVGHDVATMREEMESMQ 231
            A L++L+ SDEDM+GL+++            P +H  VELLLENYHRQL L   DV +M   ++S Q
Sbjct:  274 ALLKELLDSDEDMVGLVVSHGRT--------PSQHEDVELLLENYHRQLTLTLQDVVSMLRLVQSKQ 332          
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Match: W7TUB2_9STRA (Mitochondrial rna splicing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUB2_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 6.530e-6
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 1
Query:    4 DGFCVAKTR-----ACLEDLMHSDEDMLGLLLTETMQLD--------EGEMLDPHRHSVVELLLENYHRQLVLVGHDVATMREEMESMQ 231
            DG  VA+         L+ L+  DEDML +LLTE   L         +   LD + HS VELLLENY R+L+L G  +  ++  ++S Q
Sbjct:  269 DGLSVAQHNMQEAVGVLQQLVDCDEDMLAMLLTEKAALQKEKARVSSQAARLDLNLHSDVELLLENYLRELILTGQQIKMLQARVQSAQ 357          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34314.9163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K9J8_9PHAE1.540e-2877.78EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836C9F9_9STRA3.850e-1552.11Magnesium transporter n=1 Tax=Tribonema minus TaxI... [more]
A0A8J2SNL6_9STRA7.390e-1051.39Magnesium transporter n=1 Tax=Pelagomonas calceola... [more]
A0A7S2CAG0_9STRA2.350e-854.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2M7D7_9DINO5.050e-745.45Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S4HRH7_9STRA9.740e-747.76Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2R5GXE5_9STRA1.000e-642.03Magnesium transporter n=1 Tax=Hondaea fermentalgia... [more]
A0A6S8XKU5_9STRA1.870e-646.27Magnesium transporter n=1 Tax=Chaetoceros debilis ... [more]
A0A813IX34_POLGL6.450e-644.78Magnesium transporter (Fragment) n=3 Tax=Polarella... [more]
W7TUB2_9STRA6.530e-638.20Mitochondrial rna splicing protein n=2 Tax=Monodop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34314contigH-paniculata_contig34314:1669..2242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue4.3e-25
Seed eggNOG ortholog2880.D8LPU8
Preferred nameMRS2
KEGG rclassRC00537,RC00983
KEGG koko:K01053,ko:K12765,ko:K16075
KEGG TC1.A.35.5
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko04113,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map04113
KEGG ModuleM00129
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006089,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0008324,GO:0009987,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0016020,GO:0016021,GO:0019752,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032787,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045016,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071704,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901615,GO:1903830,GO:1990542
EggNOG free text desc.magnesium ion transmembrane transporter activity
EggNOG OGsKOG2662@1,KOG2662@2759
Ec32 ortholog descriptioninner membrane magnesium transporter
Ec32 orthologEc-18_002560.1
EC2.7.11.1,3.1.1.17
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko04147
Exons2
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.3923352-CDS-H-paniculata_contig34314:1668..17851622930059.3923352-CDS-H-paniculata_contig34314:1668..1785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34314 1669..1785 -
1691481129.9717484-CDS-H-paniculata_contig34314:1668..17851691481129.9717484-CDS-H-paniculata_contig34314:1668..1785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34314 1669..1785 -
1622930059.40693-CDS-H-paniculata_contig34314:2128..22421622930059.40693-CDS-H-paniculata_contig34314:2128..2242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34314 2129..2242 -
1691481129.9848993-CDS-H-paniculata_contig34314:2128..22421691481129.9848993-CDS-H-paniculata_contig34314:2128..2242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34314 2129..2242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34314.9163.1prot_H-paniculata_contig34314.9163.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34314 1669..2242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34314.9163.1

>prot_H-paniculata_contig34314.9163.1 ID=prot_H-paniculata_contig34314.9163.1|Name=mRNA_H-paniculata_contig34314.9163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MDGFCVAKTRACLEDLMHSDEDMLGLLLTETMQLDEGEMLDPHRHSVVEL
LLENYHRQLVLVGHDVATMREEMESMQ
back to top

mRNA from alignment at H-paniculata_contig34314:1669..2242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34314.9163.1 ID=mRNA_H-paniculata_contig34314.9163.1|Name=mRNA_H-paniculata_contig34314.9163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=574bp|location=Sequence derived from alignment at H-paniculata_contig34314:1669..2242- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGGGTTCTGCGTTGCGAAGACCCGAGCGTGTCTAGAAGATCTGAT GCACAGCGACGAGGACATGCTGGGGCTGCTGCTGACAGAAACGATGCAGC TGGATGAAGGGGAGGTGTGTGTGTGTATGTGTGTGTGTGTTACGGACGTA CCCTAGGGAGACGGGCACTCATACTATAATTTCTGAAGTATACCCTATAC CCATGATGGATGGATGTGTGTATGCACGCCGTTCAGATGCTGGAATCCTA CCCCAATAATGAGTTCGAATCGTTTTCCTTTTTGTTTTCTCCCCACAAAA TTAAATAAATCAAGACTCGAAATCTACGCGAAAAATTTACATCCTTTTTT TTTTTTTTAATTAAAAATGGGGGGGGGGCGGGGGGGGGGGACGGGGATTC GGCGGGGGGGAGGGGGGTGTTCATAACATAAGTTCTGTATGCGTGCATGC CGTACAGATGCTGGACCCCCACCGTCACTCTGTTGTGGAGCTACTGCTGG AGAACTACCATCGACAGTTAGTCCTGGTGGGACACGATGTTGCAACCATG CGAGAGGAGATGGAATCTATGCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig34314:1669..2242-

>mRNA_H-paniculata_contig34314.9163.1 ID=mRNA_H-paniculata_contig34314.9163.1|Name=mRNA_H-paniculata_contig34314.9163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig34314:1669..2242- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGGGTTCTGCGTTGCGAAGACCCGAGCGTGTCTAGAAGATCTGAT
GCACAGCGACGAGGACATGCTGGGGCTGCTGCTGACAGAAACGATGCAGC
TGGATGAAGGGGAGATGGACGGGTTCTGCGTTGCGAAGACCCGAGCGTGT
CTAGAAGATCTGATGCACAGCGACGAGGACATGCTGGGGCTGCTGCTGAC
AGAAACGATGCAGCTGGATGAAGGGGAGATGCTGGACCCCCACCGTCACT
CTGTTGTGGAGCTACTGCTGGAGAACTACCATCGACAGTTAGTCCTGGTG
GGACACGATGTTGCAACCATGCGAGAGGAGATGGAATCTATGCAGATGCT
GGACCCCCACCGTCACTCTGTTGTGGAGCTACTGCTGGAGAACTACCATC
GACAGTTAGTCCTGGTGGGACACGATGTTGCAACCATGCGAGAGGAGATG
GAATCTATGCAG
back to top