mRNA_H-paniculata_contig34301.9159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34301.9159.1
Unique NamemRNA_H-paniculata_contig34301.9159.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34301.9159.1 vs. uniprot
Match: D8LLB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLB7_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.890e-9
Identity = 54/133 (40.60%), Postives = 65/133 (48.87%), Query Frame = 2 
Query:  239 ASTGDGGG--DSGDLAMLPLLLNGGFTVRLGAWAG--------DYPDL-WDSAAAIAATASTKMPIVGKNRRALAVEVGWLVRGGVGDGDGGDQKREGGATSI-----REVVTTVIDAETMAPLGIWRGNEMR 589
            A TG GG   D     +  LLL GG TVR G W G          P+  W +A A  A  +   P   +     AVEVGW V       +GG    EGGA++      REV+TTV+DA TM PLG WRG+E R
Sbjct:  235 APTGGGGATFDRETAGIKTLLLPGGITVRSGPWLGAAAADGTSSAPEKRWGAAGAALAGETAGFPT--EEAEPWAVEVGWFVV------EGG----EGGASAAISREKREVLTTVVDARTMTPLGAWRGDERR 355
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34301.9159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLB7_ECTSI1.890e-940.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34301contigH-paniculata_contig34301:1031..1652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size622
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34301.9159.1prot_H-paniculata_contig34301.9159.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34301 1170..1622 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.087762-UTR-H-paniculata_contig34301:1030..11691622930059.087762-UTR-H-paniculata_contig34301:1030..1169Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34301 1031..1169 +
1691481129.7840078-UTR-H-paniculata_contig34301:1030..11691691481129.7840078-UTR-H-paniculata_contig34301:1030..1169Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34301 1031..1169 +
1622930059.1141798-UTR-H-paniculata_contig34301:1622..16521622930059.1141798-UTR-H-paniculata_contig34301:1622..1652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34301 1623..1652 +
1691481129.8158631-UTR-H-paniculata_contig34301:1622..16521691481129.8158631-UTR-H-paniculata_contig34301:1622..1652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34301 1623..1652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.1012647-CDS-H-paniculata_contig34301:1169..16221622930059.1012647-CDS-H-paniculata_contig34301:1169..1622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34301 1170..1622 +
1691481129.801158-CDS-H-paniculata_contig34301:1169..16221691481129.801158-CDS-H-paniculata_contig34301:1169..1622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34301 1170..1622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34301.9159.1

>prot_H-paniculata_contig34301.9159.1 ID=prot_H-paniculata_contig34301.9159.1|Name=mRNA_H-paniculata_contig34301.9159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MQLFTSDGTTDITCTTTTTSSTTSHRPISYWTTASTGDGGGDSGDLAMLP
LLLNGGFTVRLGAWAGDYPDLWDSAAAIAATASTKMPIVGKNRRALAVEV
GWLVRGGVGDGDGGDQKREGGATSIREVVTTVIDAETMAPLGIWRGNEMR
*
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mRNA from alignment at H-paniculata_contig34301:1031..1652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34301.9159.1 ID=mRNA_H-paniculata_contig34301.9159.1|Name=mRNA_H-paniculata_contig34301.9159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=622bp|location=Sequence derived from alignment at H-paniculata_contig34301:1031..1652+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGTTTATTTATGCATTCCGTACTCGTCAACGACTTCCTCCCCTCCT
CCCCTGGCCCCTCTTGAGCGTACCCCCCCCGCTATCCATTCCCTTTTTCT
CCACCGACCCCCATCTGGGAAAATGCTAAATCTCCCCGCATGCAGCTGTT
TACCTCGGACGGCACCACCGACATTACTTGTACTACCACCACCACTAGTA
GCACAACGTCACATCGGCCGATTTCTTACTGGACAACAGCAAGCACGGGC
GATGGCGGTGGCGACAGTGGCGACCTCGCCATGTTGCCCCTTCTTCTGAA
CGGAGGCTTCACGGTGCGACTGGGGGCGTGGGCAGGAGACTACCCGGACT
TATGGGACAGTGCCGCGGCGATAGCAGCGACGGCATCGACGAAGATGCCC
ATTGTTGGGAAAAATCGTCGGGCGTTGGCGGTGGAAGTCGGGTGGTTGGT
TCGCGGCGGCGTTGGCGACGGCGACGGCGGCGACCAGAAGAGGGAGGGGG
GTGCCACGAGTATAAGGGAGGTTGTCACCACTGTGATTGATGCCGAGACG
ATGGCTCCGTTGGGGATATGGCGGGGGAACGAAATGCGGTGATGTGACGT
TGGCGTGATGTGACTTGACACG
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Coding sequence (CDS) from alignment at H-paniculata_contig34301:1031..1652+

>mRNA_H-paniculata_contig34301.9159.1 ID=mRNA_H-paniculata_contig34301.9159.1|Name=mRNA_H-paniculata_contig34301.9159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig34301:1031..1652+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCTGTTTACCTCGGACGGCACCACCGACATTACTTGTACTACCAC
CACCACTAGTAGCACAACGTCACATCGGCCGATTTCTTACTGGACAACAG
CAAGCACGGGCGATGGCGGTGGCGACAGTGGCGACCTCGCCATGTTGCCC
CTTCTTCTGAACGGAGGCTTCACGGTGCGACTGGGGGCGTGGGCAGGAGA
CTACCCGGACTTATGGGACAGTGCCGCGGCGATAGCAGCGACGGCATCGA
CGAAGATGCCCATTGTTGGGAAAAATCGTCGGGCGTTGGCGGTGGAAGTC
GGGTGGTTGGTTCGCGGCGGCGTTGGCGACGGCGACGGCGGCGACCAGAA
GAGGGAGGGGGGTGCCACGAGTATAAGGGAGGTTGTCACCACTGTGATTG
ATGCCGAGACGATGGCTCCGTTGGGGATATGGCGGGGGAACGAAATGCGG
TGAATGCAGCTGTTTACCTCGGACGGCACCACCGACATTACTTGTACTAC
CACCACCACTAGTAGCACAACGTCACATCGGCCGATTTCTTACTGGACAA
CAGCAAGCACGGGCGATGGCGGTGGCGACAGTGGCGACCTCGCCATGTTG
CCCCTTCTTCTGAACGGAGGCTTCACGGTGCGACTGGGGGCGTGGGCAGG
AGACTACCCGGACTTATGGGACAGTGCCGCGGCGATAGCAGCGACGGCAT
CGACGAAGATGCCCATTGTTGGGAAAAATCGTCGGGCGTTGGCGGTGGAA
GTCGGGTGGTTGGTTCGCGGCGGCGTTGGCGACGGCGACGGCGGCGACCA
GAAGAGGGAGGGGGGTGCCACGAGTATAAGGGAGGTTGTCACCACTGTGA
TTGATGCCGAGACGATGGCTCCGTTGGGGATATGGCGGGGGAACGAAATG
CGGTGA
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