mRNA_H-paniculata_contig34266.9154.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34266.9154.1
Unique NamemRNA_H-paniculata_contig34266.9154.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: D7FJ93_ECTSI (Signal recognition particle subunit SRP72 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ93_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.750e-28
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1
Query:    1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDAHAKAQAKKEASVK 201
            GKIDPTKP+PKPDPERWI RSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDA A+AQAK+ AS K
Sbjct:  610 GKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDALARAQAKQAASEK 676          
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A835YI58_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI58_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.720e-15
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDAHAK 171
            GK+DPTKP   PDPERWI R  R+Y KRGRKRNK +GAQG+GDGA K+ AKLD  A+
Sbjct:  631 GKLDPTKPALLPDPERWIPRKQRSYAKRGRKRNKLLGAQGAGDGAKKEEAKLDVAAR 687          
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A7S2V151_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V151_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.100e-15
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDAHAKAQAKKE 189
            G+ DP KP   PDPERW+ R  R+Y +RGR+ R++F GAQG+G+G AKD AKLDA+A++QAKKE
Sbjct:   35 GRYDPRKPT-FPDPERWVPRKQRSYNRRGRRGRHRFTGAQGAGEGTAKDAAKLDAYARSQAKKE 97          
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A7R9UBM0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBM0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 9.530e-15
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDAHAKAQAKKEASVKS 204
            GKI   +P PKPDPERW+ R  R+Y KRG++RN+F+GAQGSGDGA KD AKLD  A+   ++E  ++S
Sbjct:  115 GKIHADRP-PKPDPERWLPRKQRSYNKRGKRRNQFLGAQGSGDGAQKDAAKLDVAARVAERREKGIES 181          
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A7S2SJY1_9STRA (Signal recognition particle subunit SRP72 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJY1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.570e-13
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RN-KFVGAQGSGDGAAKDTAKLDAHAKAQAKKE 189
            GK DP  P   PDPERWI +  R+Y KRGRK RN KF GAQG+G+GAAKD AKLDA+A+AQAKKE
Sbjct:  618 GKYDPKHPAT-PDPERWIPKKLRSYNKRGRKNRNAKFSGAQGTGEGAAKDAAKLDAYARAQAKKE 681          
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A812S6I0_SYMMI (SRP72 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S6I0_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 2.130e-13
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDAHAKAQA 180
            GK DP +P  KPDPERW+   HR+Y KRGRK R+KFVG QGSGDGA KD  KLD +A+ QA
Sbjct:  443 GKYDPARPS-KPDPERWLPLKHRSYNKRGRKNRHKFVGGQGSGDGAQKDMQKLDVYARTQA 502          
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: W7TLA7_9STRA (Srp72 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLA7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.010e-13
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDAHAKAQAKK 186
            GK D ++P P PDPERWIA++ R+Y KRG+K R KFVGAQGSG+GAA+D A LD  ++ +A+K
Sbjct:  648 GKYDASRPGPPPDPERWIAKNQRSYNKRGKKGRGKFVGAQGSGNGAARDAAMLDVASRVEAEK 710          
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A7S0GD07_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GD07_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.560e-13
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDAHAKAQAKK 186
            GK + ++P  KPDPERWI +  R+Y KRGRK RN+FVGAQGSG G  KD AKLDA A+A+AK+
Sbjct:   48 GKYNLSRPN-KPDPERWIPKKQRSYNKRGRKARNRFVGAQGSGMGTEKDAAKLDAFARAEAKR 109          
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A4D9D6J5_9STRA (MFS domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6J5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.930e-12
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDAHAKAQAKK 186
            GK D ++P P PDPERWIA++ R+Y KRG+K + KFVGAQGSG+GAAKD A LD  ++ +A++
Sbjct: 1098 GKYDASRPGPPPDPERWIAKNQRSYNKRGKKGKAKFVGAQGSGNGAAKDAAMLDVASRVEAER 1160          
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: T0PMW8_SAPDV (Signal recognition particle subunit SRP72 n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PMW8_SAPDV)

HSP 1 Score: 67.0 bits (162), Expect = 2.310e-11
Identity = 41/63 (65.08%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   10 DPTKPIPKPDPERWIARSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDAHAKAQAKKEASV 198
            +P  P+ KPDPERWI R  R+ G R R RNKFVGAQGSG G+ KD AKLDA A+A AKK A V
Sbjct:  563 NPLIPLLKPDPERWIPRKQRSRGNR-RNRNKFVGAQGSGMGSQKDAAKLDAAARAAAKKVAPV 624          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FJ93_ECTSI3.750e-2889.55Signal recognition particle subunit SRP72 n=2 Tax=... [more]
A0A835YI58_9STRA2.720e-1568.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V151_9STRA7.100e-1560.94Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7R9UBM0_9STRA9.530e-1557.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2SJY1_9STRA1.570e-1369.23Signal recognition particle subunit SRP72 n=2 Tax=... [more]
A0A812S6I0_SYMMI2.130e-1365.57SRP72 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
W7TLA7_9STRA4.010e-1360.32Srp72 n=2 Tax=Nannochloropsis gaditana TaxID=72520... [more]
A0A7S0GD07_9STRA4.560e-1363.49Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A4D9D6J5_9STRA1.930e-1258.73MFS domain-containing protein n=1 Tax=Nannochlorop... [more]
T0PMW8_SAPDV2.310e-1165.08Signal recognition particle subunit SRP72 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34266contigH-paniculata_contig34266:265..984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue9.4e-24
Seed eggNOG ortholog2880.D7FJ93
Preferred nameSRP72
KEGG koko:K03108
KEGG TC3.A.5.9
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005047,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005786,GO:0005829,GO:0006403,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008312,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0019904,GO:0030911,GO:0032991,GO:0033036,GO:0033227,GO:0033365,GO:0034613,GO:0042221,GO:0042493,GO:0042886,GO:0043021,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048500,GO:0050657,GO:0050658,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:1901363,GO:1990904
EggNOG free text desc.7S RNA binding
EggNOG OGsKOG2376@1,KOG2376@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.616921-CDS-H-paniculata_contig34266:264..3511622930058.616921-CDS-H-paniculata_contig34266:264..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34266 265..351 -
1691481129.5525331-CDS-H-paniculata_contig34266:264..3511691481129.5525331-CDS-H-paniculata_contig34266:264..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34266 265..351 -
1622930058.6294699-CDS-H-paniculata_contig34266:867..9841622930058.6294699-CDS-H-paniculata_contig34266:867..984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34266 868..984 -
1691481129.568343-CDS-H-paniculata_contig34266:867..9841691481129.568343-CDS-H-paniculata_contig34266:867..984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34266 868..984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34266.9154.1prot_H-paniculata_contig34266.9154.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34266 265..984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34266.9154.1

>prot_H-paniculata_contig34266.9154.1 ID=prot_H-paniculata_contig34266.9154.1|Name=mRNA_H-paniculata_contig34266.9154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
GKIDPTKPIPKPDPERWIARSHRAYGKRGRKRNKFVGAQGSGDGAAKDTA
KLDAHAKAQAKKEASVKS
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mRNA from alignment at H-paniculata_contig34266:265..984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34266.9154.1 ID=mRNA_H-paniculata_contig34266.9154.1|Name=mRNA_H-paniculata_contig34266.9154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at H-paniculata_contig34266:265..984- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAAATTGACCCTACTAAACCGATCCCCAAGCCTGACCCGGAGAGATG GATCGCACGGTCACACCGGGCCTACGGGAAACGCGGGCGCAAGCGCAATA AGTTCGTGGGAGCTCAGGTGTCTATCGTACATTTCGACAAGAAGAAGAGC CTACGCACACACCTTGTAGTGTTGTCTTTTGGATATGTAGCGTTTTTGTG TGGTGACTGTGAGCGAGTTCTTGTGTAATGTGACACAACAAGTTATGAGC TCCAGGCATGCGTTTCGTGGCTTTGTCACCTCTTTTGACACATCCAGACG AATCGAGTCAGAGGTCTTTTAGTAGGTGCAACCCCCACACTGCCTACTTG GTTCGGCCGAACCGGGGTGGCGCCTGCCCCGCAGAGGAATGAATAACTCT GTTCTGTTAAAGGAAATGTAGAAATACTTCGGTAGAAATACTTCAAGTAT GGAAGCATCGGTAAAGGTTTTAACCTTAGCCTTCCGGGGGTTAAAAAAAA CAAGCCAAAAACGTTCAGACGAATAGAGCACTGGAATGCCCGAGTCAGAG TCACGTGTAGCAACGGAAAACATGTGATGATGATTTATTTGTATGGGTAT CTTTTTTCGTCTTGCATTTTTTTTACACATCAGGGGTCAGGCGACGGAGC GGCTAAAGACACGGCTAAGTTGGATGCTCATGCCAAGGCGCAGGCCAAGA AAGAGGCTTCCGTCAAAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig34266:265..984-

>mRNA_H-paniculata_contig34266.9154.1 ID=mRNA_H-paniculata_contig34266.9154.1|Name=mRNA_H-paniculata_contig34266.9154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig34266:265..984- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAAATTGACCCTACTAAACCGATCCCCAAGCCTGACCCGGAGAGATG
GATCGCACGGTCACACCGGGCCTACGGGAAACGCGGGCGCAAGCGCAATA
AGTTCGTGGGAGCTCAGGGGAAAATTGACCCTACTAAACCGATCCCCAAG
CCTGACCCGGAGAGATGGATCGCACGGTCACACCGGGCCTACGGGAAACG
CGGGCGCAAGCGCAATAAGTTCGTGGGAGCTCAGGGGTCAGGCGACGGAG
CGGCTAAAGACACGGCTAAGTTGGATGCTCATGCCAAGGCGCAGGCCAAG
AAAGAGGCTTCCGTCAAAAGCGGGTCAGGCGACGGAGCGGCTAAAGACAC
GGCTAAGTTGGATGCTCATGCCAAGGCGCAGGCCAAGAAAGAGGCTTCCG
TCAAAAGC
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