prot_H-paniculata_contig34258.9152.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig34258.9152.1
Unique Nameprot_H-paniculata_contig34258.9152.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length42
Homology
BLAST of mRNA_H-paniculata_contig34258.9152.1 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 9.110e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 0
Query:    4 RFLFDFLRTVAANSGTNRMTSENLAIVWAPNLVRPE 39
            RFLF+FLR VA +S TNRMTSENLAIVWAPNL+RP+
Sbjct: 1256 RFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQ 1291          
BLAST of mRNA_H-paniculata_contig34258.9152.1 vs. uniprot
Match: A0A6H5JEV0_9PHAE (Rho-GAP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.110e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 0
Query:    4 RFLFDFLRTVAANSGTNRMTSENLAIVWAPNLVRPE 39
            RFLF+FLR VA +S TNRMTSENLAIVWAPNL+RP+
Sbjct: 1202 RFLFEFLRKVAMHSSTNRMTSENLAIVWAPNLLRPQ 1237          
BLAST of mRNA_H-paniculata_contig34258.9152.1 vs. uniprot
Match: A0A835Z007_9STRA (Rho-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z007_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.750e-6
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0
Query:    4 RFLFDFLRTVAANSGTNRMTSENLAIVWAPNLVRP 38
            R LF FLR+VA  S  N MT+ NLAIVWAPNL+RP
Sbjct: 1206 RGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRP 1240          
BLAST of mRNA_H-paniculata_contig34258.9152.1 vs. uniprot
Match: A0A7I8W991_9ANNE (DgyrCDS12950 n=3 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W991_9ANNE)

HSP 1 Score: 48.9 bits (115), Expect = 1.830e-5
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query:    2 IQRFLFDFLRTVAANSGTNRMTSENLAIVWAPNLVRPEVR 41
            I + L   L T+AA+S TN+MT+ NLA+VWAP+L+RP V+
Sbjct:  513 ILKILVKHLTTIAAHSITNKMTAANLAVVWAPSLLRPRVQ 552          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34258.9152.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL35_ECTSI9.110e-1180.56Similar to Rho GTPase activating protein 24 n=1 Ta... [more]
A0A6H5JEV0_9PHAE9.110e-1180.56Rho-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835Z007_9STRA9.750e-668.57Rho-GAP domain-containing protein n=1 Tax=Tribonem... [more]
A0A7I8W991_9ANNE1.830e-555.00DgyrCDS12950 n=3 Tax=Dimorphilus gyrociliatus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 4..39
e-value: 4.8E-12
score: 46.0
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 1..41
score: 14.513
IPR008936Rho GTPase activation proteinGENE3D1.10.555.10coord: 1..41
e-value: 4.0E-13
score: 51.0
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 4..39
NoneNo IPR availablePANTHERPTHR45808FAMILY NOT NAMEDcoord: 4..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34258contigH-paniculata_contig34258:451..576 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34258.9152.1mRNA_H-paniculata_contig34258.9152.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig34258 451..576 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig34258.9152.1 ID=prot_H-paniculata_contig34258.9152.1|Name=mRNA_H-paniculata_contig34258.9152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
SIQRFLFDFLRTVAANSGTNRMTSENLAIVWAPNLVRPEVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR008936Rho_GTPase_activation_prot