mRNA_H-paniculata_contig34258.9152.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34258.9152.1
Unique NamemRNA_H-paniculata_contig34258.9152.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34258.9152.1 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 9.110e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   10 RFLFDFLRTVAANSGTNRMTSENLAIVWAPNLVRPE 117
            RFLF+FLR VA +S TNRMTSENLAIVWAPNL+RP+
Sbjct: 1256 RFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQ 1291
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BLAST of mRNA_H-paniculata_contig34258.9152.1 vs. uniprot
Match: A0A6H5JEV0_9PHAE (Rho-GAP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.110e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   10 RFLFDFLRTVAANSGTNRMTSENLAIVWAPNLVRPE 117
            RFLF+FLR VA +S TNRMTSENLAIVWAPNL+RP+
Sbjct: 1202 RFLFEFLRKVAMHSSTNRMTSENLAIVWAPNLLRPQ 1237
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BLAST of mRNA_H-paniculata_contig34258.9152.1 vs. uniprot
Match: A0A835Z007_9STRA (Rho-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z007_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.750e-6
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   10 RFLFDFLRTVAANSGTNRMTSENLAIVWAPNLVRP 114
            R LF FLR+VA  S  N MT+ NLAIVWAPNL+RP
Sbjct: 1206 RGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRP 1240
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BLAST of mRNA_H-paniculata_contig34258.9152.1 vs. uniprot
Match: A0A7I8W991_9ANNE (DgyrCDS12950 n=3 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W991_9ANNE)

HSP 1 Score: 48.9 bits (115), Expect = 1.830e-5
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    4 IQRFLFDFLRTVAANSGTNRMTSENLAIVWAPNLVRPEVR 123
            I + L   L T+AA+S TN+MT+ NLA+VWAP+L+RP V+
Sbjct:  513 ILKILVKHLTTIAAHSITNKMTAANLAVVWAPSLLRPRVQ 552
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34258.9152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL35_ECTSI9.110e-1180.56Similar to Rho GTPase activating protein 24 n=1 Ta... [more]
A0A6H5JEV0_9PHAE9.110e-1180.56Rho-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835Z007_9STRA9.750e-668.57Rho-GAP domain-containing protein n=1 Tax=Tribonem... [more]
A0A7I8W991_9ANNE1.830e-555.00DgyrCDS12950 n=3 Tax=Dimorphilus gyrociliatus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34258contigH-paniculata_contig34258:451..576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog2880.D7FL35
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0043087,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0065007,GO:0065009
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG4270@1,KOG4270@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.4601748-CDS-H-paniculata_contig34258:450..5761622930058.4601748-CDS-H-paniculata_contig34258:450..576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34258 451..576 -
1691481129.4776323-CDS-H-paniculata_contig34258:450..5761691481129.4776323-CDS-H-paniculata_contig34258:450..576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34258 451..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34258.9152.1prot_H-paniculata_contig34258.9152.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34258 451..576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34258.9152.1

>prot_H-paniculata_contig34258.9152.1 ID=prot_H-paniculata_contig34258.9152.1|Name=mRNA_H-paniculata_contig34258.9152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
SIQRFLFDFLRTVAANSGTNRMTSENLAIVWAPNLVRPEVR*
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mRNA from alignment at H-paniculata_contig34258:451..576-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34258.9152.1 ID=mRNA_H-paniculata_contig34258.9152.1|Name=mRNA_H-paniculata_contig34258.9152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at H-paniculata_contig34258:451..576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTATCCAAAGGTTTCTGTTCGACTTTTTGCGGACGGTGGCGGCCAACAG
CGGCACCAATCGGATGACTTCGGAAAATTTGGCCATCGTGTGGGCTCCGA
ATCTTGTTCGACCGGAGGTGAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig34258:451..576-

>mRNA_H-paniculata_contig34258.9152.1 ID=mRNA_H-paniculata_contig34258.9152.1|Name=mRNA_H-paniculata_contig34258.9152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig34258:451..576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTATCCAAAGGTTTCTGTTCGACTTTTTGCGGACGGTGGCGGCCAACAG
CGGCACCAATCGGATGACTTCGGAAAATTTGGCCATCGTGTGGGCTCCGA
ATCTTGTTCGACCGGAGGTGAGGTGATCTATCCAAAGGTTTCTGTTCGAC
TTTTTGCGGACGGTGGCGGCCAACAGCGGCACCAATCGGATGACTTCGGA
AAATTTGGCCATCGTGTGGGCTCCGAATCTTGTTCGACCGGAGGTGAGGT
GA
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