mRNA_H-paniculata_contig34226.9147.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34226.9147.1
Unique NamemRNA_H-paniculata_contig34226.9147.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34226.9147.1 vs. uniprot
Match: A0A6H5LE02_9PHAE (DUF3668 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE02_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-7
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  398 VSGDRGGEEELQRLVEWRKELLETGMYTVQHPIVSELSRGIASARATTAGRGAGRPLRREE 580
            + GD  G  E++RL+EWR ELL TGMYT Q+PIVSEL+R I+ A  +  GRG+G  L+REE
Sbjct: 1009 LGGDVDGSTEMRRLIEWRDELLATGMYTPQNPIVSELNRRISLAGGSVGGRGSGL-LQREE 1068
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BLAST of mRNA_H-paniculata_contig34226.9147.1 vs. uniprot
Match: D7FXH9_ECTSI (Centrosomal protein 120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH9_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.770e-7
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:  398 VSGDRGGEEELQRLVEWRKELLETGMYTVQHPIVSELSRGIASARATTAGRGAGRPLRREE 580
            + GD  G  E++RL+EWR ELL TGMYT Q+PIVSEL+R I+ A  +  GRG+   L+REE
Sbjct: 1367 LGGDVDGSTEMRRLIEWRDELLATGMYTPQNPIVSELNRRISLAGGSVGGRGSSL-LQREE 1426
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34226.9147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LE02_9PHAE1.060e-757.38DUF3668 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FXH9_ECTSI6.770e-755.74Centrosomal protein 120 n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34226contigH-paniculata_contig34226:402..983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size583
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.8704214-CDS-H-paniculata_contig34226:401..9831622930057.8704214-CDS-H-paniculata_contig34226:401..983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34226 402..983 +
1691481129.239513-CDS-H-paniculata_contig34226:401..9831691481129.239513-CDS-H-paniculata_contig34226:401..983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34226 402..983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34226.9147.1prot_H-paniculata_contig34226.9147.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34226 402..983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34226.9147.1

>prot_H-paniculata_contig34226.9147.1 ID=prot_H-paniculata_contig34226.9147.1|Name=mRNA_H-paniculata_contig34226.9147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
TPPRFQSHQLHMGVEGFGTGLPPSRIRNSFPDLLGPSPSPPPRPTPAPAP
ANVLHRRDRGVSASPEAQQSSRGSAAGLAKKMDVIGKDMHGQRERGDHRV
SDTKKVFDGTAEGAADKRGERERWLGCRAAEERKWGPRRGGGAAEVGRVE
KGTVGDGYVHRATSYCQRAQPGDCKRKSDHGGSGGGATVAKRGV
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mRNA from alignment at H-paniculata_contig34226:402..983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34226.9147.1 ID=mRNA_H-paniculata_contig34226.9147.1|Name=mRNA_H-paniculata_contig34226.9147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at H-paniculata_contig34226:402..983+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCCACCTCGCTTTCAATCTCACCAGCTGCACATGGGCGTCGAAGGTTT
CGGTACGGGGCTACCTCCATCGCGGATCCGGAACTCGTTCCCGGACCTGC
TCGGCCCATCACCAAGTCCCCCGCCGCGTCCAACGCCTGCGCCAGCCCCA
GCCAACGTTTTACACAGAAGGGACCGCGGCGTTAGCGCCAGCCCAGAAGC
CCAGCAATCTTCTCGAGGGTCGGCAGCAGGGCTTGCGAAGAAAATGGATG
TCATTGGTAAGGACATGCATGGGCAACGGGAGAGGGGCGACCATCGAGTC
TCTGACACGAAGAAGGTATTCGACGGCACGGCAGAGGGGGCGGCAGACAA
GAGAGGGGAAAGAGAACGATGGCTTGGGTGTCGGGCAGCTGAAGAGCGTA
AGTGGGGACCGAGGAGGGGAGGAGGAGCTGCAGAGGTTGGTCGAGTGGAG
AAAGGAACTGTTGGAGACGGGTATGTACACCGTGCAACATCCTATTGTCA
GCGAGCTCAGCCGGGGGATTGCAAGCGCAAGAGCGACCACGGCGGGTCGG
GGGGCGGGGCGACCGTTGCGAAGAGAGGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig34226:402..983+

>mRNA_H-paniculata_contig34226.9147.1 ID=mRNA_H-paniculata_contig34226.9147.1|Name=mRNA_H-paniculata_contig34226.9147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig34226:402..983+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCCACCTCGCTTTCAATCTCACCAGCTGCACATGGGCGTCGAAGGTTT
CGGTACGGGGCTACCTCCATCGCGGATCCGGAACTCGTTCCCGGACCTGC
TCGGCCCATCACCAAGTCCCCCGCCGCGTCCAACGCCTGCGCCAGCCCCA
GCCAACGTTTTACACAGAAGGGACCGCGGCGTTAGCGCCAGCCCAGAAGC
CCAGCAATCTTCTCGAGGGTCGGCAGCAGGGCTTGCGAAGAAAATGGATG
TCATTGGTAAGGACATGCATGGGCAACGGGAGAGGGGCGACCATCGAGTC
TCTGACACGAAGAAGGTATTCGACGGCACGGCAGAGGGGGCGGCAGACAA
GAGAGGGGAAAGAGAACGATGGCTTGGGTGTCGGGCAGCTGAAGAGCGTA
AGTGGGGACCGAGGAGGGGAGGAGGAGCTGCAGAGGTTGGTCGAGTGGAG
AAAGGAACTGTTGGAGACGGGTATGTACACCGTGCAACATCCTATTGTCA
GCGAGCTCAGCCGGGGGATTGCAAGCGCAAGAGCGACCACGGCGGGTCGG
GGGGCGGGGCGACCGTTGCGAAGAGAGGAGTGACTCCACCTCGCTTTCAA
TCTCACCAGCTGCACATGGGCGTCGAAGGTTTCGGTACGGGGCTACCTCC
ATCGCGGATCCGGAACTCGTTCCCGGACCTGCTCGGCCCATCACCAAGTC
CCCCGCCGCGTCCAACGCCTGCGCCAGCCCCAGCCAACGTTTTACACAGA
AGGGACCGCGGCGTTAGCGCCAGCCCAGAAGCCCAGCAATCTTCTCGAGG
GTCGGCAGCAGGGCTTGCGAAGAAAATGGATGTCATTGGTAAGGACATGC
ATGGGCAACGGGAGAGGGGCGACCATCGAGTCTCTGACACGAAGAAGGTA
TTCGACGGCACGGCAGAGGGGGCGGCAGACAAGAGAGGGGAAAGAGAACG
ATGGCTTGGGTGTCGGGCAGCTGAAGAGCGTAAGTGGGGACCGAGGAGGG
GAGGAGGAGCTGCAGAGGTTGGTCGAGTGGAGAAAGGAACTGTTGGAGAC
GGGTATGTACACCGTGCAACATCCTATTGTCAGCGAGCTCAGCCGGGGGA
TTGCAAGCGCAAGAGCGACCACGGCGGGTCGGGGGGCGGGGCGACCGTTG
CGAAGAGAGGAGTG
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