mRNA_H-paniculata_contig34225.9146.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34225.9146.1
Unique NamemRNA_H-paniculata_contig34225.9146.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34225.9146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34225contigH-paniculata_contig34225:2..1267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size394
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34225.9146.1prot_H-paniculata_contig34225.9146.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34225 105..976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.7130134-UTR-H-paniculata_contig34225:1..1041622930057.7130134-UTR-H-paniculata_contig34225:1..104Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34225 2..104 -
1691481129.1778355-UTR-H-paniculata_contig34225:1..1041691481129.1778355-UTR-H-paniculata_contig34225:1..104Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34225 2..104 -
1622930057.7928395-UTR-H-paniculata_contig34225:976..9921622930057.7928395-UTR-H-paniculata_contig34225:976..992Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34225 977..992 -
1691481129.2212715-UTR-H-paniculata_contig34225:976..9921691481129.2212715-UTR-H-paniculata_contig34225:976..992Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34225 977..992 -
1622930057.8132784-UTR-H-paniculata_contig34225:1226..12671622930057.8132784-UTR-H-paniculata_contig34225:1226..1267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34225 1227..1267 -
1691481129.2299213-UTR-H-paniculata_contig34225:1226..12671691481129.2299213-UTR-H-paniculata_contig34225:1226..1267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34225 1227..1267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.7299643-CDS-H-paniculata_contig34225:104..1151622930057.7299643-CDS-H-paniculata_contig34225:104..115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34225 105..115 -
1691481129.1902843-CDS-H-paniculata_contig34225:104..1151691481129.1902843-CDS-H-paniculata_contig34225:104..115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34225 105..115 -
1622930057.7523181-CDS-H-paniculata_contig34225:473..5431622930057.7523181-CDS-H-paniculata_contig34225:473..543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34225 474..543 -
1691481129.1991289-CDS-H-paniculata_contig34225:473..5431691481129.1991289-CDS-H-paniculata_contig34225:473..543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34225 474..543 -
1622930057.775628-CDS-H-paniculata_contig34225:823..9761622930057.775628-CDS-H-paniculata_contig34225:823..976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34225 824..976 -
1691481129.211948-CDS-H-paniculata_contig34225:823..9761691481129.211948-CDS-H-paniculata_contig34225:823..976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34225 824..976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34225.9146.1

>prot_H-paniculata_contig34225.9146.1 ID=prot_H-paniculata_contig34225.9146.1|Name=mRNA_H-paniculata_contig34225.9146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MAYQNYSAFNVHLTSLDRAVQRRRNDVLEGMQPVQRWIDFLLSQPWPPLL
TQDHRERRAEQWHRPWKMARWRALGKS*
back to top

mRNA from alignment at H-paniculata_contig34225:2..1267-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34225.9146.1 ID=mRNA_H-paniculata_contig34225.9146.1|Name=mRNA_H-paniculata_contig34225.9146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig34225:2..1267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCACCGTCGAACGCACGGACTGGACACCGCGCTTCACCCGGTGAGCAAT
TTCCGCTGGTATGGTGCCGTTTACACAAAAAGTTGTCATTTTCCTGAATA
TCTCGGTAGTAGTAGTAGTAGATTGTACAACTGTCCACCTCCCTCCTTAC
CTCTCTCTCTTAATCTATCGTCTCTCCGATCCGGTATACACGCACCACAG
AATGAAGTGGTTATTTGCTCGTCTCTCATTTGATAGTGCGCATTGCTTCT
ATTGTGTGCTCTATTTCATCTACAGGGCTGTACACAAGGCGATGGCGTAC
CAGAATTACTCGGCGTTCAACGTCCACCTTACTTCGTTGGACAGGGCCGT
ACAACGGCGCAGGAACGACGTGCTGGAGGGCATGCAGCCTGTTCAGAGAT
GGATTGATTTCCTGCTATCACAGCCCTGGCCCCCACTGCTAACGGTTAGT
TGCGAATGGTGTTTCAAACGTTTAGTTGATGGTGTAGTGTTTTTATGTGT
GTATGTTATCGACACAAAAGGCTGTTGCATGTAAACCGCCCTGTGTTGCG
ATCCGATGCCCCTTTCGGAAAAACCGCTCTTTCTGTTTGCAAACAGAATT
TACATGATGCGTAGTAATTCGCCGCGTCCCAGCACCGGCTCATACCCGGC
AGAAGTCCGTGTGCGTCACAGTGTGTTGGTGACCAACTGTTAATGAAGAC
GCCGTTAAACGAAAACCTCTGCAGCAGGACCATCGCGAACGACGCGCAGA
ACAGTGGCACCGCCCGTGGAAGATGGCAAGATGGCGAGCGCTAGGTACGA
AACACTTGGTTTTGTACTCGCATTGCCAGAGTGGGCAAAAGAGAGAATGT
ACGACGGATGGATATACATCGATGATGCCGTTTTGGCGTTGGGAAAGTTG
TAGTATCGGTATTGGTGTTGATGTGACATTTCGTGAAGGTGTGTGTGACT
GGTTACTACTGTATGTACAAATATGTTCATGGAAGTATGTGTGTCATATA
CAAACTATAGATTGAACAAAGACACCACCTACATACGTCTATATTTATGT
GTCATTACCGTCATTGATGTTCAAATATGTAACGTCTACTTGTCGTAGTT
CTGCATGATGTACACAAGTCTAACAGTTCCGTGCGTGACGTCTGTTCGCC
AGGAAAATCATGACGAAGATATTCACCGCGGATGTACTTCAAGAGGGGTT
CGACATGCAGCAACAGGTACTGCATCCGCCGGGCACAAAGGTCATGTTGG
CGTTCTTGAACATCGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig34225:2..1267-

>mRNA_H-paniculata_contig34225.9146.1 ID=mRNA_H-paniculata_contig34225.9146.1|Name=mRNA_H-paniculata_contig34225.9146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig34225:2..1267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTACCAGAATTACTCGGCGTTCAACGTCCACCTTACTTCGTTGGA
CAGGGCCGTACAACGGCGCAGGAACGACGTGCTGGAGGGCATGCAGCCTG
TTCAGAGATGGATTGATTTCCTGCTATCACAGCCCTGGCCCCCACTGCTA
ACGATGGCGTACCAGAATTACTCGGCGTTCAACGTCCACCTTACTTCGTT
GGACAGGGCCGTACAACGGCGCAGGAACGACGTGCTGGAGGGCATGCAGC
CTGTTCAGAGATGGATTGATTTCCTGCTATCACAGCCCTGGCCCCCACTG
CTAACGCAGGACCATCGCGAACGACGCGCAGAACAGTGGCACCGCCCGTG
GAAGATGGCAAGATGGCGAGCGCTAGCAGGACCATCGCGAACGACGCGCA
GAACAGTGGCACCGCCCGTGGAAGATGGCAAGATGGCGAGCGCTAGGAAA
ATCATGAGAAAATCATGA
back to top