mRNA_H-paniculata_contig34212.9142.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34212.9142.1
Unique NamemRNA_H-paniculata_contig34212.9142.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34212.9142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34212contigH-paniculata_contig34212:6..1123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size194
Cds size192
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34212.9142.1prot_H-paniculata_contig34212.9142.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34212 6..1121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.2207673-CDS-H-paniculata_contig34212:5..631622930057.2207673-CDS-H-paniculata_contig34212:5..63Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34212 6..63 +
1691481129.0107384-CDS-H-paniculata_contig34212:5..631691481129.0107384-CDS-H-paniculata_contig34212:5..63Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34212 6..63 +
1622930057.2333586-CDS-H-paniculata_contig34212:608..6801622930057.2333586-CDS-H-paniculata_contig34212:608..680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34212 609..680 +
1691481129.0189853-CDS-H-paniculata_contig34212:608..6801691481129.0189853-CDS-H-paniculata_contig34212:608..680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34212 609..680 +
1622930057.2480845-CDS-H-paniculata_contig34212:1059..11211622930057.2480845-CDS-H-paniculata_contig34212:1059..1121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34212 1060..1121 +
1691481129.02715-CDS-H-paniculata_contig34212:1059..11211691481129.02715-CDS-H-paniculata_contig34212:1059..1121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34212 1060..1121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34212.9142.1

>prot_H-paniculata_contig34212.9142.1 ID=prot_H-paniculata_contig34212.9142.1|Name=mRNA_H-paniculata_contig34212.9142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
VHWDCTIRLPWNAEKERPVCVVSTGTLSGRIPWLMRTSLAGDDADLEFRL
LVSRQESRFCSPCN
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mRNA from alignment at H-paniculata_contig34212:6..1123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34212.9142.1 ID=mRNA_H-paniculata_contig34212.9142.1|Name=mRNA_H-paniculata_contig34212.9142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1118bp|location=Sequence derived from alignment at H-paniculata_contig34212:6..1123+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCATTGGGACTGTACGATTCGCCTTCCGTGGAATGCAGAGAAGGAACG
ACCTGTTTGTAAGTAAAGCCATATCAAAGACGGTAGGTTCGTGCGGGCAA
CCTTTAGGGAAGCAGCCATGACAAACATTTTACTCAGTCACCTATAAAAA
GGTCAGCAGAGGATCAGCATTGATGTTCATAAATATAAGGCACAGACGCA
TCAATAATGCAGCCAGCATATGAAACGATTAAGGGTAGGGTGTCGCTCTG
CCAAAATCCCGCCTTTTCGTAAGTAAGTCCAACATACATCCCCACTACTT
ACGATAAGGGCACATAACCCTTGCTAATTGCTTGTTGTACTGTGGATCTA
AACCTAGACAAAAGACAGAATTGAGCGCCTGCTTACGTCCTCCTCTCATG
ACCCGCTAGAGGTGAGGGTGTAGCAAAGCTCAGGGTGACGGTCTCGTTGA
TTTTGTGTGCTGCTATGTCCTGGGCCTCGTGTTTTTCTTCTTCATTAAGC
TCGTAAGTGTTCAAACCATCGGTGATCTCTGCCTGTCTCTGAGCCTTTAA
AGTGGCGCATTGCCTTTCCACTTCTGCTGCCACCATTGCTTTAATTTTGG
CAGGCGTTGTATCAACTGGGACCCTATCCGGTAGAATACCATGGCTAATG
AGAACCTCATTGGCCGGGGATGATGCCTGTATGACAAGGGGAGCATGGGG
GAATATATTACATAGTAGTCAACGTACGTGTTATACACAACATGGTAAAT
AGTGTCTGCATCATCAAGAAACGGCAGCGCGAACAAAACAGCTTCTCAAC
AGGCATCAATGTCAACGAAACAATTCGGCTTCCGTTGATTAATACGTTCT
ATTGTCCAAGCCTTACGTGGCTTTCTTCGGGTGCCACTACTACTAAGGCA
TCTCCGTCAATCGGCGTTGACAACGTTTTCATAACTGGCTCAGCTGTTTG
GTACTGCAGATAATGATAGTGCTTGCGCAACACATTTACTTGTAGATGTT
GATGACTGTCGCACACAACACCACACCAAACATTGGACAATCTCCGACTC
TGTACTGACCTTGAATTTCGCCTCCTTGTAAGCCGCCAAGAAAGCCGTTT
CTGCTCGCCTTGCAACCT
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Coding sequence (CDS) from alignment at H-paniculata_contig34212:6..1123+

>mRNA_H-paniculata_contig34212.9142.1 ID=mRNA_H-paniculata_contig34212.9142.1|Name=mRNA_H-paniculata_contig34212.9142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig34212:6..1123+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCATTGGGACTGTACGATTCGCCTTCCGTGGAATGCAGAGAAGGAACG
ACCTGTTTGTTCATTGGGACTGTACGATTCGCCTTCCGTGGAATGCAGAG
AAGGAACGACCTGTTTGCGTTGTATCAACTGGGACCCTATCCGGTAGAAT
ACCATGGCTAATGAGAACCTCATTGGCCGGGGATGATGGCGTTGTATCAA
CTGGGACCCTATCCGGTAGAATACCATGGCTAATGAGAACCTCATTGGCC
GGGGATGATGCTGACCTTGAATTTCGCCTCCTTGTAAGCCGCCAAGAAAG
CCGTTTCTGCTCGCCTTGCAACCTGACCTTGAATTTCGCCTCCTTGTAAG
CCGCCAAGAAAGCCGTTTCTGCTCGCCTTGCAAC
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