mRNA_H-paniculata_contig34201.9140.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34201.9140.1
Unique NamemRNA_H-paniculata_contig34201.9140.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Match: A0A6H5L909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L909_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.700e-26
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTYQLQPVCKSSGMSISTDTID 207
            +RKTAGPI   +VDV+I+EEAAYMP+RTL MILAA HSSG HVIGTYDT+QLQPVC SSGMSIS D +D
Sbjct:  535 VRKTAGPIRTLKVDVIIIEEAAYMPLRTLRMILAAAHSSGTHVIGTYDTHQLQPVCDSSGMSISKDNVD 603
[Close]
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 3.180e-26
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTYQLQPVCKSSGMSISTDTID 207
            +RKTAG IHIPRVDVVI+EEAAYM +  LSMI AATHSSG HVIGTYDT+QLQPV +SSGMSIS D +D
Sbjct: 1033 VRKTAGSIHIPRVDVVIIEEAAYMSLHALSMIFAATHSSGVHVIGTYDTHQLQPVRESSGMSISVDNVD 1101
[Close]
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.100e-25
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTYQLQPVCKSSGMSISTDTID 207
            ++KTAG I   +VDV+I+EEAAYMP+RTLSMILAA HSSG HVIGTYDT+QLQPVC SSGMSIS D +D
Sbjct:  888 VKKTAGSIRTLKVDVIIIEEAAYMPLRTLSMILAAAHSSGTHVIGTYDTHQLQPVCDSSGMSISRDNVD 956
[Close]
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Match: D7G6J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J5_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.040e-25
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTYQLQPVCKSSGMSISTDTID 207
            MRKTAG I   +VDV+I+EEAAYMP+RTLSMILAA   SG HVIGTYDT+QLQPVC+SSGMSIS+D +D
Sbjct:  612 MRKTAGSIRTLKVDVIIIEEAAYMPLRTLSMILAAARCSGTHVIGTYDTHQLQPVCESSGMSISSDNVD 680
[Close]
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.050e-25
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTYQLQPVCKSSGMSISTDTID 207
            MRKTAG I   +VDV+I+EEAAYMP+RTLSMILAA   SG HVIGTYDT+QLQPVC+SSGMSIS+D +D
Sbjct:  831 MRKTAGSIRTLKVDVIIIEEAAYMPLRTLSMILAAARCSGTHVIGTYDTHQLQPVCESSGMSISSDNVD 899
[Close]
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.800e-25
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTYQLQPVCKSSGMSISTDTID 207
            ++KTAG I   +VDV+I+EEAAYMP+RTLSM+LAA HSSG HVIGTYDT+QLQPVC+SSGMSIS D ++
Sbjct:  424 VKKTAGSIRTLKVDVIIIEEAAYMPLRTLSMVLAAAHSSGTHVIGTYDTHQLQPVCESSGMSISRDNVN 492
[Close]
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.820e-25
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTYQLQPVCKSSGMSISTDTID 207
            ++KTAG I   +VDV+I+EEAAYMP+RTLSM+LAA HSSG HVIGTYDT+QLQPVC+SSGMSIS D ++
Sbjct:  853 VKKTAGSIRALKVDVIIIEEAAYMPLRTLSMVLAAAHSSGTHVIGTYDTHQLQPVCESSGMSISRDNVN 921
[Close]
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Match: A0A6H5L2B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.830e-25
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTYQLQPVCKSSGMSISTDTID 207
            ++KTAG I   +VDV+I+EEAAYMP+RTLSMILAA HSSG HVIGTYDT QLQPVC SSGMSIS D +D
Sbjct: 1087 VKKTAGSIRTLKVDVIIIEEAAYMPLRTLSMILAAAHSSGTHVIGTYDTNQLQPVCDSSGMSISRDNVD 1155
[Close]
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Match: A0A6H5JTS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS3_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.230e-25
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTYQLQPVCKSSGMSISTDTID 207
            +RKTAG I   +VDV+I+EEAAYMP+RTLSMILAA HSSG HVIGTYDT+QLQPVC SSGMSIS   +D
Sbjct:  868 VRKTAGSIRTLKVDVIIIEEAAYMPLRTLSMILAAAHSSGTHVIGTYDTHQLQPVCDSSGMSISKANVD 936
[Close]
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Match: A0A6H5JHT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.120e-25
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTYQLQPVCKSSGMSISTDTID 207
            +RKTAG I   +VDV I+EEAAY+P+RTLSMILAA HSSG HVIGTYDT+QLQPVC SSGMSIS D +D
Sbjct:  856 VRKTAGSIRTLKVDVFIIEEAAYIPLRTLSMILAAAHSSGTHVIGTYDTHQLQPVCYSSGMSISRDNVD 924
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34201.9140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L909_9PHAE1.700e-2676.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFQ2_ECTSI3.180e-2678.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5J754_9PHAE1.100e-2575.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J5_ECTSI2.040e-2575.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FV89_ECTSI2.050e-2575.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWL4_9PHAE3.800e-2572.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI3.820e-2572.46Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L2B8_9PHAE3.830e-2575.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTS3_9PHAE5.230e-2575.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHT1_9PHAE7.120e-2575.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34201contigH-paniculata_contig34201:269..475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue5.3e-22
Seed eggNOG ortholog2880.D8LFQ2
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.9785175-CDS-H-paniculata_contig34201:268..4751622930056.9785175-CDS-H-paniculata_contig34201:268..475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34201 269..475 -
1691481128.9328258-CDS-H-paniculata_contig34201:268..4751691481128.9328258-CDS-H-paniculata_contig34201:268..475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34201 269..475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34201.9140.1prot_H-paniculata_contig34201.9140.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34201 269..475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34201.9140.1

>prot_H-paniculata_contig34201.9140.1 ID=prot_H-paniculata_contig34201.9140.1|Name=mRNA_H-paniculata_contig34201.9140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MRKTAGPIHIPRVDVVIVEEAAYMPIRTLSMILAATHSSGAHVIGTYDTY
QLQPVCKSSGMSISTDTID
back to top

mRNA from alignment at H-paniculata_contig34201:269..475-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34201.9140.1 ID=mRNA_H-paniculata_contig34201.9140.1|Name=mRNA_H-paniculata_contig34201.9140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig34201:269..475- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAGACTGCGGGGCCGATACACATCCCTCGAGTAGACGTTGTCAT
CGTGGAGGAAGCCGCGTACATGCCTATCCGTACTCTCAGCATGATCCTCG
CGGCGACACACAGCAGCGGTGCCCACGTCATCGGGACCTATGACACGTAC
CAGCTTCAGCCTGTTTGCAAGAGCAGCGGCATGTCCATTAGCACGGACAC
CATCGAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig34201:269..475-

>mRNA_H-paniculata_contig34201.9140.1 ID=mRNA_H-paniculata_contig34201.9140.1|Name=mRNA_H-paniculata_contig34201.9140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig34201:269..475- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAGACTGCGGGGCCGATACACATCCCTCGAGTAGACGTTGTCAT
CGTGGAGGAAGCCGCGTACATGCCTATCCGTACTCTCAGCATGATCCTCG
CGGCGACACACAGCAGCGGTGCCCACGTCATCGGGACCTATGACACGTAC
CAGCTTCAGCCTGTTTGCAAGAGCAGCGGCATGTCCATTAGCACGGACAC
CATCGATATGAGGAAGACTGCGGGGCCGATACACATCCCTCGAGTAGACG
TTGTCATCGTGGAGGAAGCCGCGTACATGCCTATCCGTACTCTCAGCATG
ATCCTCGCGGCGACACACAGCAGCGGTGCCCACGTCATCGGGACCTATGA
CACGTACCAGCTTCAGCCTGTTTGCAAGAGCAGCGGCATGTCCATTAGCA
CGGACACCATCGAT
back to top