mRNA_H-paniculata_contig34190.9134.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34190.9134.1
Unique NamemRNA_H-paniculata_contig34190.9134.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34190.9134.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.880e-6
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 TGEGLAIVVLAAVGVGVSLVFLLAFSRYRKSRTVQLGQPALCMVLTVSDACCCTPIIGLLGYM-DKTCII 207
            +GEG+AI +LA VGV +SL F  A SRY++SR V+LGQPAL     V        I  LLG   D TC +
Sbjct:  130 SGEGIAIGILAGVGVALSLCFWGALSRYKQSRVVRLGQPALSKTFVVGIGVTFLSIFALLGATTDLTCAL 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34190.9134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH00_ECTSI1.880e-648.57G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34190contigH-paniculata_contig34190:513..719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.6476855-CDS-H-paniculata_contig34190:512..7191622930055.6476855-CDS-H-paniculata_contig34190:512..719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34190 513..719 +
1691481128.4074404-CDS-H-paniculata_contig34190:512..7191691481128.4074404-CDS-H-paniculata_contig34190:512..719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34190 513..719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34190.9134.1prot_H-paniculata_contig34190.9134.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34190 513..719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34190.9134.1

>prot_H-paniculata_contig34190.9134.1 ID=prot_H-paniculata_contig34190.9134.1|Name=mRNA_H-paniculata_contig34190.9134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
TGEGLAIVVLAAVGVGVSLVFLLAFSRYRKSRTVQLGQPALCMVLTVSDA
CCCTPIIGLLGYMDKTCII
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mRNA from alignment at H-paniculata_contig34190:513..719+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34190.9134.1 ID=mRNA_H-paniculata_contig34190.9134.1|Name=mRNA_H-paniculata_contig34190.9134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig34190:513..719+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGAGAAGGCTTGGCTATCGTCGTGCTTGCAGCGGTGGGCGTGGGCGT
GTCTCTTGTCTTCCTCCTGGCGTTTTCACGATATCGAAAATCGAGGACGG
TGCAACTGGGCCAGCCAGCTCTCTGCATGGTGCTCACTGTAAGTGACGCG
TGTTGTTGTACCCCAATTATTGGATTGTTAGGTTACATGGACAAAACCTG
TATCATA
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Coding sequence (CDS) from alignment at H-paniculata_contig34190:513..719+

>mRNA_H-paniculata_contig34190.9134.1 ID=mRNA_H-paniculata_contig34190.9134.1|Name=mRNA_H-paniculata_contig34190.9134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig34190:513..719+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGAGAAGGCTTGGCTATCGTCGTGCTTGCAGCGGTGGGCGTGGGCGT
GTCTCTTGTCTTCCTCCTGGCGTTTTCACGATATCGAAAATCGAGGACGG
TGCAACTGGGCCAGCCAGCTCTCTGCATGGTGCTCACTGTAAGTGACGCG
TGTTGTTGTACCCCAATTATTGGATTGTTAGGTTACATGGACAAAACCTG
TATCATAACAGGAGAAGGCTTGGCTATCGTCGTGCTTGCAGCGGTGGGCG
TGGGCGTGTCTCTTGTCTTCCTCCTGGCGTTTTCACGATATCGAAAATCG
AGGACGGTGCAACTGGGCCAGCCAGCTCTCTGCATGGTGCTCACTGTAAG
TGACGCGTGTTGTTGTACCCCAATTATTGGATTGTTAGGTTACATGGACA
AAACCTGTATCATA
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