mRNA_H-paniculata_contig3419.9131.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3419.9131.1
Unique NamemRNA_H-paniculata_contig3419.9131.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3419.9131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3419contigH-paniculata_contig3419:500..4707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size1594
Cds size849
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3419.9131.1prot_H-paniculata_contig3419.9131.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3419 821..4283 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.4317348-UTR-H-paniculata_contig3419:499..8201622930055.4317348-UTR-H-paniculata_contig3419:499..820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3419 500..820 -
1691481128.3217423-UTR-H-paniculata_contig3419:499..8201691481128.3217423-UTR-H-paniculata_contig3419:499..820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3419 500..820 -
1622930055.4844482-UTR-H-paniculata_contig3419:4283..47071622930055.4844482-UTR-H-paniculata_contig3419:4283..4707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3419 4284..4707 -
1691481128.3528607-UTR-H-paniculata_contig3419:4283..47071691481128.3528607-UTR-H-paniculata_contig3419:4283..4707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3419 4284..4707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.4465263-CDS-H-paniculata_contig3419:820..9321622930055.4465263-CDS-H-paniculata_contig3419:820..932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3419 821..932 -
1691481128.3313196-CDS-H-paniculata_contig3419:820..9321691481128.3313196-CDS-H-paniculata_contig3419:820..932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3419 821..932 -
1622930055.466044-CDS-H-paniculata_contig3419:3546..42831622930055.466044-CDS-H-paniculata_contig3419:3546..4283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3419 3547..4283 -
1691481128.3449383-CDS-H-paniculata_contig3419:3546..42831691481128.3449383-CDS-H-paniculata_contig3419:3546..4283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3419 3547..4283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3419.9131.1

>prot_H-paniculata_contig3419.9131.1 ID=prot_H-paniculata_contig3419.9131.1|Name=mRNA_H-paniculata_contig3419.9131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=283bp
MSTNSPRRRKRHTPRHATARSSLLRRVLLLSSILVFAGQVTTVVVATVGA
FTIPTPITRTVNQLITTRLSLFQYNSAFHRSSHDHSANKPTPRRGRVVSI
LSTKCSPRNHCRAATRWPQLSRVQRRASSWGEILHGVIINPLQVGGVSIS
MMSTLPRLTCYHGDDSSWTARSIRSRRAVTTSYKYALSSRAHLWALCGSR
LFCSAPAEGTQESGSGGDGGGEERALLLRMDFEHADIEELRRWIRSTAQH
RPSSNYRLANVQTSRRYRREEHGRWSFRETLH*
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mRNA from alignment at H-paniculata_contig3419:500..4707-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3419.9131.1 ID=mRNA_H-paniculata_contig3419.9131.1|Name=mRNA_H-paniculata_contig3419.9131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4208bp|location=Sequence derived from alignment at H-paniculata_contig3419:500..4707- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATACCCTTCGTATTGGCCAGTGCTCTGGCGTTTCTTTGATCCACAGTT
GGTTCACGCGACACTGGGAAAATCTTCAGTGGTTTTTTGTCCCGTTCGTG
CAAGGTTTCGCTTCTTTTTCATGCCAACAAGTGTTTTTACGTTGACTGAA
AACAGAACTCTGTTCATAGGGGGGTGGTATCTGCGTATCTCCCGCAGCTT
GGCCTACAGCAGTTCAAGCAGTTGAACTCTACAATAACACACAGGCGCGA
GGAAGTACACTGCTATACATCACAGCAGAGCACGGCAAAGCGGCAACGAA
CCGCATGGGATGGAAGAGTGATGCACACAAGTAAAGACTGCGGGTCACGA
CACAACATAGTAGGAGTACAGCCTGACCCAGCAACAAACCTGCAGCGAGT
TTTACCGAGGTCGACGTCAAGATCATGTCGACGAATTCACCACGAAGGAG
GAAACGACACACACCACGCCATGCTACGGCAAGGTCATCATTGCTAAGGA
GGGTTTTACTGTTGTCCTCGATCCTCGTGTTTGCTGGACAGGTTACCACT
GTCGTCGTTGCCACCGTTGGAGCTTTCACTATTCCGACACCCATCACACG
AACTGTAAATCAGCTCATAACAACCCGATTGTCGCTATTTCAATATAACT
CCGCGTTCCACCGCAGCAGCCACGACCACAGTGCCAACAAACCAACTCCG
CGACGAGGCAGGGTAGTCAGCATTCTCAGCACAAAATGTTCACCACGGAA
CCATTGCAGAGCAGCGACGAGGTGGCCGCAGTTAAGCAGGGTCCAGCGTA
GGGCATCGTCGTGGGGGGAAATATTGCACGGTGTGATTATTAACCCGCTG
CAGGTTGGAGGCGTGTCGATATCAATGATGTCCACTCTTCCCCGCCTCAC
CTGCTACCATGGCGACGACTCCTCCTGGACAGCACGGAGTATCCGATCTA
GACGAGCTGTTACCACTAGCTACAAATATGCCCTATCGAGTAGGGCGCAC
CTGTGGGCACTTTGCGGGAGTAGACTATTTTGTTCAGCGCCGGCAGAGGG
GACGCAAGAAAGCGGCAGCGGTGGCGATGGAGGCGGTGAAGAGAGAGCAC
TGCTGCTGAGAATGGACTTCGAACACGCGGATATAGAAGAGCTAAGGCGT
TGGATTCGAAGGTCAGGACGAGAATGGTATGGACGGGCAGAATTCGGACC
AATATCCCGGTGTACAGTACCCGACACACCTAACCCCTTGAGGGCTCTCG
AAATGTCCCATATCGTACCCTATGCAAACGCTTCATTATTTCTCCAGAAA
CAAGAAAAGTGATAAAAATAAACACCAGTCAAACACGCCAAACAACCACA
TACAGCTCGTAGCGAGAAGAGAGCAAAGGGGAGACACTTCACCCGACCAA
TCGCATGCTTCGCTCGGGATGAACGTATCTAGTGCAATGCTTCCCTCCAA
ACAGCCATTCGAACACTAAATGCACATGAGGTCAAGTCGTCAGTCAGTTC
GCTGGATACAACAATCCCAGTGGTAGTCAAATCAGGCATTGCGTAATAGG
TACCCTTGGTGCTTAGGGGTCATTGTGACATGGCATACATTAGCATTGAG
CGGTCAGCGAAGCAGACCGCAGGAGTTACACACACACGTGGGATTCGTGG
TTCATCAGCCTCTGCCCGCTCCGGACTTGAGAAAGAACAACGACGCCAAC
GCCATCATAGCTCAGCTACATCCAGTAGCCCCACATAACAGTTCTGGTTC
AGGCTGCCGCGTTATTGCCGACCCATCCGTCAGTAGCTCAGTAGAGAGTC
AATGGCAAACAAAACGCTTTTGTTCTACTACGGATAGTCCAGACAGACAC
AGTATACTGTAGAGGATTTTAATGCGCGACAGCGTGAAACTATGGTAAAC
AGCACTAAAATATCGGTACCTCTGCGTTCCTTGTGAGGTCGGCCGCCGCA
TATAATTTTACGAGCAAAGGCCATTACGTTGAGTGGACGGCGTGTTACCA
CTGTTGTGTTTTGGTTCTCTAAGTGTCGGCGCGTAGCGTGAGTTTACCAG
AGTACGAGGTTCATAAATTGAGGGAATTTTTCTCGATATTTGACATAATT
TGGATTGTCACTCCGAGCAGGCATATATGGCACATCACATTGTGTGACAT
ATGCTAAAACCAAAAGACCGAATCTTCAACCATGTACTGCCTTTTCAGCT
ATTTTCTCAACGTTCCAGGTATGAGAAATTGCGCACTTGGTGGAATATAA
CGAAGAAAGCTGAAAATCGCAATAATGTTTTAGAATCGAATCGTCAGTCG
CAAGCCATTCATTTATGTGTATCCCGTTCCAAAGAGGTTGAGAAATCGGT
AGTCGAGAAACTCAGGCTCGTTTGTTTTACCTCATCAAGAAGCTTGCTCA
AGAAACGCTGTTACATTCGAGGCGTCTACCTCCTTCGTTCCGTAAGTACA
GGAACTTAGGTTTGACGCGCCATATCTCCAACTCTACAGCGATTCACTGG
GAGCTCGTGGTATCGATTGAAAGAGAGTTCTACGTAGATTCGACTCAATA
CGACCAAAAATAATCAGCGCTACAAAACTCATAAGAACTATCGCTGCGGC
AACTAGATATGGAACATGGCAAATCCTGGGCGTTAGCCCTTTGACTCCTG
GGGGCATGTAGTGTGGCATTTTATTATATGCAAAATCTCACAGCCCCGTG
TCCTAAGATGGGGGTAGGATGCATATTGAGGGGAGGGGGATACTGATTTG
GGACGGACGAAAATTGTGTCGGTGGAGATGACATCATAACATGTCCAATC
GGATGAATATATCCATCGGGCATAAAACAAGAAGCGTACCACAAAATTAA
TAGTACCCAGGGACTGTAGGAGTGGAAGGGGTCAAAGTGACAATTTTCAT
TTTAGACATTTCACGTCCACGGCTGGTTTGCTGCGGCTGCAACGCTAATG
CTGGACAGTTGATATAGAGGATTTAGTATAGCTGACAGACTGCAGTACCA
CACACAGTGGTTCCATTCATTGGTGACAACGAACTGGACCGTATAAGCAG
CATGACAGATTCAGTAGAGTTGCGCCCGGCCACGGAAGGAACATGTAGTA
GAGTAGAATGCATGCAACAGTTGGCGTTGTTCTGATTGGTGATACTGGGG
CATCAGCTACAACAATGAAAAGAGGAAGATAGGTTGGCGGGCACCGGCAT
CTTCCGAAAGTTCCCTGGCAAGCCATAGCCGCTGCATGTATGTCGTCCTG
TTATGCGTGAGGGGTAGCGTCTACAACCAAAAGACAGAGAAAACTTGATC
AACGCTTGGGCAGCCGAACTAGCAGTACACTTGGGTCTATCGGGCCGTGA
GAGTCTGAAAGGCGTGCGGAATTCATTGCACACCTCTCTCGCACAGCTAT
GGCCGCCCTTGCACACACACAAACACAGACACGCACATTTATGTTTCATT
AACATTTTAGGACACTCGCTCAGACCCGCGGTCAGATACGAATTACCAAA
TGTCACAGATGATGGAAAGATATCGCGCTCGATAGCGGATGACGGTAAGC
ACTGATACATCTGTACACCTGACTGATACGAGATGATCTATCGTGCATGC
CGATGTATCCGATATTATCGGTGTCGATACACAAGCCAACTAATACGAAA
CCTTTGGGAACCGGCGGTGGTTGCTTCAAAACACAACAACTGGATTCAGA
ATATTAGCTGTCAATAAGAACTATGCCAACTGCTCGTCTGTACCTGTATG
CATCATGCGTTGTTTACACTCGCAGTACGGCGCAACACCGGCCAAGTTCC
AACTATCGCCTTGCCAATGTTCAAACATCAAGGCGCTATCGTCGGGAGGA
GCACGGTCGTTGGTCATTCCGTGAAACTCTACATTGAGTGCTTCATTTTG
TGGATGATCTCTGTAAAAGTCGCTAATTCAAATATGGTTCTCGAGGGGAA
ATAAATTCAGTTTTCGGATTTAGTCTGGCTAGGAGATAGCTTCGGTAATT
TGGTAAGATAAGAAATATTATCTTAAATTGGTGGTCGCAGGTAAACACGT
CATTTGGAGTAATGTGCACTTCCGTGTTTTCCTGGATGTTGCGAGAGCAA
TGATAGCAGGACTACGTTCCTTCAAATTCTACCGCCTGTTTCTGTTGCTG
GTATTTCGTTTGTTTTCGACAGGGGTAGATTCGTTACAGTGTTCAGTGAG
TAATCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3419:500..4707-

>mRNA_H-paniculata_contig3419.9131.1 ID=mRNA_H-paniculata_contig3419.9131.1|Name=mRNA_H-paniculata_contig3419.9131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at H-paniculata_contig3419:500..4707- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGAATTCACCACGAAGGAGGAAACGACACACACCACGCCATGC
TACGGCAAGGTCATCATTGCTAAGGAGGGTTTTACTGTTGTCCTCGATCC
TCGTGTTTGCTGGACAGGTTACCACTGTCGTCGTTGCCACCGTTGGAGCT
TTCACTATTCCGACACCCATCACACGAACTGTAAATCAGCTCATAACAAC
CCGATTGTCGCTATTTCAATATAACTCCGCGTTCCACCGCAGCAGCCACG
ACCACAGTGCCAACAAACCAACTCCGCGACGAGGCAGGGTAGTCAGCATT
CTCAGCACAAAATGTTCACCACGGAACCATTGCAGAGCAGCGACGAGGTG
GCCGCAGTTAAGCAGGGTCCAGCGTAGGGCATCGTCGTGGGGGGAAATAT
TGCACGGTGTGATTATTAACCCGCTGCAGGTTGGAGGCGTGTCGATATCA
ATGATGTCCACTCTTCCCCGCCTCACCTGCTACCATGGCGACGACTCCTC
CTGGACAGCACGGAGTATCCGATCTAGACGAGCTGTTACCACTAGCTACA
AATATGCCCTATCGAGTAGGGCGCACCTGTGGGCACTTTGCGGGAGTAGA
CTATTTTGTTCAGCGCCGGCAGAGGGGACGCAAGAAAGCGGCAGCGGTGG
CGATGGAGGCGGTGAAGAGAGAGCACTGCTGCTGAGAATGGACTTCGAAC
ACGCGGATATAGAAGAGCTAAGGCGTTGGATTCGAAGATGTCGACGAATT
CACCACGAAGGAGGAAACGACACACACCACGCCATGCTACGGCAAGGTCA
TCATTGCTAAGGAGGGTTTTACTGTTGTCCTCGATCCTCGTGTTTGCTGG
ACAGGTTACCACTGTCGTCGTTGCCACCGTTGGAGCTTTCACTATTCCGA
CACCCATCACACGAACTGTAAATCAGCTCATAACAACCCGATTGTCGCTA
TTTCAATATAACTCCGCGTTCCACCGCAGCAGCCACGACCACAGTGCCAA
CAAACCAACTCCGCGACGAGGCAGGGTAGTCAGCATTCTCAGCACAAAAT
GTTCACCACGGAACCATTGCAGAGCAGCGACGAGGTGGCCGCAGTTAAGC
AGGGTCCAGCGTAGGGCATCGTCGTGGGGGGAAATATTGCACGGTGTGAT
TATTAACCCGCTGCAGGTTGGAGGCGTGTCGATATCAATGATGTCCACTC
TTCCCCGCCTCACCTGCTACCATGGCGACGACTCCTCCTGGACAGCACGG
AGTATCCGATCTAGACGAGCTGTTACCACTAGCTACAAATATGCCCTATC
GAGTAGGGCGCACCTGTGGGCACTTTGCGGGAGTAGACTATTTTGTTCAG
CGCCGGCAGAGGGGACGCAAGAAAGCGGCAGCGGTGGCGATGGAGGCGGT
GAAGAGAGAGCACTGCTGCTGAGAATGGACTTCGAACACGCGGATATAGA
AGAGCTAAGGCGTTGGATTCGAAGTACGGCGCAACACCGGCCAAGTTCCA
ACTATCGCCTTGCCAATGTTCAAACATCAAGGCGCTATCGTCGGGAGGAG
CACGGTCGTTGGTCATTCCGTGAAACTCTACATTGATACGGCGCAACACC
GGCCAAGTTCCAACTATCGCCTTGCCAATGTTCAAACATCAAGGCGCTAT
CGTCGGGAGGAGCACGGTCGTTGGTCATTCCGTGAAACTCTACATTGA
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