mRNA_H-paniculata_contig11416.913.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11416.913.1
Unique NamemRNA_H-paniculata_contig11416.913.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11416.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11416contigH-paniculata_contig11416:4557..7330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11416.913.1prot_H-paniculata_contig11416.913.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11416 4586..7330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.7287946-UTR-H-paniculata_contig11416:4556..45851622928849.7287946-UTR-H-paniculata_contig11416:4556..4585Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11416 4557..4585 +
1691480643.8530092-UTR-H-paniculata_contig11416:4556..45851691480643.8530092-UTR-H-paniculata_contig11416:4556..4585Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11416 4557..4585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.7453563-CDS-H-paniculata_contig11416:4585..48051622928849.7453563-CDS-H-paniculata_contig11416:4585..4805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11416 4586..4805 +
1691480643.8630176-CDS-H-paniculata_contig11416:4585..48051691480643.8630176-CDS-H-paniculata_contig11416:4585..4805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11416 4586..4805 +
1622928849.7613738-CDS-H-paniculata_contig11416:7289..73301622928849.7613738-CDS-H-paniculata_contig11416:7289..7330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11416 7290..7330 +
1691480643.871929-CDS-H-paniculata_contig11416:7289..73301691480643.871929-CDS-H-paniculata_contig11416:7289..7330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11416 7290..7330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11416.913.1

>prot_H-paniculata_contig11416.913.1 ID=prot_H-paniculata_contig11416.913.1|Name=mRNA_H-paniculata_contig11416.913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MLGLRKGPRIRDRRAVDHLCSGEGKTHRVVTKCIRRSGVSGGRRRGAARS
AGPTHEKIQGVCRKGRVQGATLSVDEDHEIMRIMPIG
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mRNA from alignment at H-paniculata_contig11416:4557..7330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11416.913.1 ID=mRNA_H-paniculata_contig11416.913.1|Name=mRNA_H-paniculata_contig11416.913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2774bp|location=Sequence derived from alignment at H-paniculata_contig11416:4557..7330+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGATGTTCACAGAAGGCATAAGGGGATGTTAGGTTTACGAAAGGGC
CCCCGAATACGGGATCGACGAGCAGTTGATCATCTCTGCTCTGGAGAGGG
CAAAACACACCGGGTTGTGACTAAGTGCATTCGACGAAGTGGCGTGTCGG
GTGGTCGTCGACGAGGAGCAGCAAGGAGTGCTGGCCCCACACACGAGAAA
ATTCAAGGCGTATGCCGGAAAGGGCGCGTACAAGGAGCCACTTTGTCAGG
TGGTGATGACATAAGGCGACAGAACTTGCGCAGATGTAAAAGCGATGGCG
ATGAATGATGCGAGGATTAGGGCAGGGGGATGAAGATGCACGCATGTGGA
AGGCGACAAGTAGCTTCGAGGGCAGAGGGGCTGTGATAGTAGTAGAGCGA
AGTTGACGAGTGTCTTGCGTACCCTCTCTCCCATGTACACCAACCAACCG
CCCCTCCTCTTCCCCCCCCCTCTAGTTTTGTTTCTTGGACCTTGCTGGGA
AATTTTCCTCTAGCATGGGGGAATGTTCACTACTGATGTCATTGATTTTG
TAGAGAGTCGCGGCGTTTCGCGATTGTTCCGACTGTAAATTAGCTGCGTT
TGGAGCCAAGGATTAGGAGAACAGAAGGAGGAGGACACGTGGACGTGGAC
GGCGACGAGTAGCTTTAAGAAAATTGAGGGATTGTGATGGTAGTACAAGA
GTGACGTTGACGAGGGCCTCGCGAACGCTCCCGTTATAATCCCCAATCAA
CCGTTTCCCCTCACGGCTTTCCCAACCCATTTGTTACGTTAATAAACGTT
TCCCTCGAGGACTTGAAAGGCAGCTTTGGCTTGCAGCACTTCCTGTGCGA
AATTGCGACGAAAGGCGGGTAGAGAACGCCTTTATGTCTGCTAGAAATAC
GTACGTATATGGGTAGCTATTCCCGAGTTTGTGTTTTTGATATATATATA
TATTCTTCATGTGGATCTCACAGGGTGGGCCTATTCGTTGCGTTTTTCTC
TGTGACCGGGGGCGGATCACAGCAACAGTTGCGTGTACCCGAAGTAGCAG
GTAGGACCCGCTGCTGTTTTTCTGTGGATAAATCTGCTGACCTATCGTGC
AAGAAACACAGCGAAAACGCGGCGGGATAACACGGAGATGGGCGGAATAT
CATTTTCCTTTTGGGGTACGTGCGGCGTGCATCTGTCACGCTTCCTTAAA
TCGGGACCATGTGCGTGGTGGATAGCCATCTATTTGAATAAATAGCATGG
ATATCACCCAGCTAACGTCTGATAAAATTTAAAATTGCCAGTTAACCTTC
AAGGATTGGAGCTAGTGTCTATCCGGCCGGCACTATTGAAATATTGACAC
GGTATCCAGCTAGAATTGTCATGCACGGCAATGAAGGTTTAATTTGTTGT
GTACTGTAGCGTCGTGCCTATGCTGTTTGATAACTGCGATAGCGAGTATT
TTTCAAAAAGAGATATGCATATTACATGTATATCGGAAAATATCCATAAA
GCTCGATTGTAGAACCCGAACTGTTGGAAATGATGTCAAACAAGAAAATG
AAAACAAATGTCGTTCATGTCATATACTGGTAGTCCTTGGAAACCGGGCA
CGATTTTCTCAGTCAGGACCCCCACTCGCCCCATTTTTTTTATTTTTTTT
TCTATTTTTGCTTACAGGAGAGGTGTAACACAGCTGAGATATAAGGGTAT
AATGAAGCAATTGCTTTATTATATCTCTGTAGCTACTAACTGCGGCAAGT
ATCAAAGTAGCGTGCGTGCAGGGAAGCGCGATCTCCAGTCGTGTCTTGTT
GTCAAGGGCGTTGAAAAACAAGAGATATATTATGTCCTGTCGCCGGCGCC
AAATGGGAACCATCTCGCCAGCCATACGGTTGGCACCTACGGGGGGTATC
TATGGTTAGGCTGTGGTGTCAAGTCTAGGTTCAAGCAGAGTAATGTAATG
TGGAGCACACATATACACAACTACCTCACTCTGTTGTGCAGAGCATGTAT
GTATTTTGTCGGATACGATAGGGGTTCGGTGTTCGCTCATTCTTGCTCGC
TCTACAGTCTACACTGAATTCAGGAGAACGAGGCCCTCACCAATGACAAT
AACAACAGTAATTACCCCACTTGCGTTTAGGTCTGAGCTACGCTAAGGTG
GTATTTTGCAGATGGTACCACTCTTGGTCATTAACGACTGGTCGTTGGGA
AAATGATGTTTTGGTCGCTACAAGGGCTGTGGTTCCTACTAACCTCTAAA
TAGTAGTGGCTAAAAGAGCAAAAATTAATCTCGTTCAGCTTTTACAGAGC
TACGTGGCATATCATAGTACGGTCAGTATTAGCACGGAATCTGTAAATGA
TGTAAAAATTTCACCGTTTTGACGGTCAATAATTTTTTTTTTCGTGATTT
TTTTTTACCCAGCAAAAGTTGAAATTGAATCCCGTCAATGTAATGATGCA
TAACGAATAAGCGCATCTGGTGGGTGCACATCGCACATCGATGTGTCTGT
CACACCCTGCATATAATATCCCTATTGGCCTTCTTCAAGCGCCATTACTG
GGAGTTCCCAGGTAAGGCTTTACCGTTCTTCAGTCCTTCGGCAAGAGGTA
TATACAACTTTTCGCGCAGTGTATCACGATGATTACTAAGTACTGCCGAT
GGAAGAGGGGGAAGAAACTAATGTGTATTATGTTGTTTTGTGTCTGTGGC
TTCCTGTCAACTGTTCTATTTCGCGCGCAGCAGTCGATGAAGACCATGAA
ATCATGCGGATCATGCCTATCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11416:4557..7330+

>mRNA_H-paniculata_contig11416.913.1 ID=mRNA_H-paniculata_contig11416.913.1|Name=mRNA_H-paniculata_contig11416.913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig11416:4557..7330+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGGTTTACGAAAGGGCCCCCGAATACGGGATCGACGAGCAGTTGA
TCATCTCTGCTCTGGAGAGGGCAAAACACACCGGGTTGTGACTAAGTGCA
TTCGACGAAGTGGCGTGTCGGGTGGTCGTCGACGAGGAGCAGCAAGGAGT
GCTGGCCCCACACACGAGAAAATTCAAGGCGTATGCCGGAAAGGGCGCGT
ACAAGGAGCCACTTTGTCAGATGTTAGGTTTACGAAAGGGCCCCCGAATA
CGGGATCGACGAGCAGTTGATCATCTCTGCTCTGGAGAGGGCAAAACACA
CCGGGTTGTGACTAAGTGCATTCGACGAAGTGGCGTGTCGGGTGGTCGTC
GACGAGGAGCAGCAAGGAGTGCTGGCCCCACACACGAGAAAATTCAAGGC
GTATGCCGGAAAGGGCGCGTACAAGGAGCCACTTTGTCAGTCGATGAAGA
CCATGAAATCATGCGGATCATGCCTATCGGGTCGATGAAGACCATGAAAT
CATGCGGATCATGCCTATCGGG
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