mRNA_H-paniculata_contig3418.9129.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3418.9129.1
Unique NamemRNA_H-paniculata_contig3418.9129.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3418.9129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3418contigH-paniculata_contig3418:10633..16969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size209
Cds size207
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3418.9129.1prot_H-paniculata_contig3418.9129.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3418 10633..16967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.2166862-CDS-H-paniculata_contig3418:10632..106561622930055.2166862-CDS-H-paniculata_contig3418:10632..10656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 10633..10656 +
1691481128.2533836-CDS-H-paniculata_contig3418:10632..106561691481128.2533836-CDS-H-paniculata_contig3418:10632..10656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 10633..10656 +
1622930055.2363212-CDS-H-paniculata_contig3418:11262..113191622930055.2363212-CDS-H-paniculata_contig3418:11262..11319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 11263..11319 +
1691481128.2683904-CDS-H-paniculata_contig3418:11262..113191691481128.2683904-CDS-H-paniculata_contig3418:11262..11319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 11263..11319 +
1622930055.2570412-CDS-H-paniculata_contig3418:11846..119091622930055.2570412-CDS-H-paniculata_contig3418:11846..11909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 11847..11909 +
1691481128.2757607-CDS-H-paniculata_contig3418:11846..119091691481128.2757607-CDS-H-paniculata_contig3418:11846..11909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 11847..11909 +
1622930055.2752955-CDS-H-paniculata_contig3418:16904..169671622930055.2752955-CDS-H-paniculata_contig3418:16904..16967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 16905..16967 +
1691481128.2834926-CDS-H-paniculata_contig3418:16904..169671691481128.2834926-CDS-H-paniculata_contig3418:16904..16967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 16905..16967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3418.9129.1

>prot_H-paniculata_contig3418.9129.1 ID=prot_H-paniculata_contig3418.9129.1|Name=mRNA_H-paniculata_contig3418.9129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
RRRWSTWRATAGEITAEMRQSKLEEAEFLRRETGEKAKALAYELDQVRVS
AANVIDRVVAIRVRSLRMA
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mRNA from alignment at H-paniculata_contig3418:10633..16969+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3418.9129.1 ID=mRNA_H-paniculata_contig3418.9129.1|Name=mRNA_H-paniculata_contig3418.9129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6337bp|location=Sequence derived from alignment at H-paniculata_contig3418:10633..16969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGGCGCTGGTCTACCTGGAGGGTGAGCCAAGGAACTGGTACAATACC
TATGTTGGCAATACTATTTTCCTATATTTTTCAGTGTTTTCTTTTTTAAG
TCTTCGACTCCTGGGGGCGTGGGTTGTGACACCTGGTGACACGCGAAATC
CCGCCGTCCCGTGTCATGGAAGGGGAAGGAGGCAGGGGAGGGGGGCGTTC
TCATGTTTCGCATGCTGCAGTTGATAGACCAGTGACCACACGTCCTCGGG
ACGACAGAGCTTTTTCCCTGTTAGAACGATGTCGCGTCCTCTCAATGCAC
GATGGCATCGACAGACACAATAGCAGGTAGCCTGCGATACTCGTGGTAGT
TGGAACATGACAACATGACTGATGACATAATTGATAGGTAATTCAGCGCT
GGGCTTTCCGGAAAAAGAAAGTTGCTCCTTCTGTCATTTTTTTTTTCCCC
AGGAGTCAACGGGTTAACGGGGAGAAGTGTTAATTTGGATTTGTGTCGTT
TTGGACGCGAAGGATTTTACAATTATAAAAAAAGAATCAAAATTTGTTCC
GCTGTTGCTCCCGTGTGGTGGTGGTGGTGTGTGTGTGTGTATGTGTTGGT
GGGGGGGGTGCTTTGGCGTCAACATAACAGGCAACTGCAGGAGAGATTAC
GGCGGAGATGCGGCAGTCAAAGCTGGAAGAAGCCGAGGTGGGCATTCTCT
TTTTTTCCTTTTCTGTTGTTTTCTGTCGTTTTCTGTTCTTTTTTCCTTCT
TCCTTTTATTTTGAGCAACATTTTTATTTTATTTTTATGAGTAGCCCTTC
GCTTCGGCCGTGACGTCACTAACACATATTGTAAATAAGAATCGGTCGCA
AGCGTAAAATAAGAAAAATGATAATGGCACCATCTCATGGTTGATTTTTG
GACTCGTTTTTTTATTTTGTTTTATCATGACGGATTAACCATGACGCCCC
CTCCCCCCCCCCCACCACCAACGTTCGAAGGGGTTATAAGGCAAGGCCGA
TTTGCACAATGTCAAGCATTAAGTAATAATTCGTGCATATCTCGTTTTGC
TATTTACGTAGCGGCCGCAAATAACTGTGGCTCCTCCCCCCACAGTACAG
GTAGTTTGAAACTACGTGAGTTGAGGTTAATGTTTGTATTACTTACCCGC
CCCGAGCGGACCGCGACCGCGACCGCGACCGCGACCGTTGCTGCCGATTG
CGACTCTGATGCAGTTCCTTCGCCGAGAGACGGGGGAAAAGGCGAAGGCC
TTGGCGTACGAGCTCGACCAAGTTCGGGTCAGTTTTGTGTTGATGTATTT
TTATCTGTTTTTTCATGTGTTTCGATTAATGTGTTTTTTAGTGTTCGCTT
GATGTTTTATTATTGGTTTTCACATGTACTGATTTGTTGTTGTTGTTGTT
ATTGTTATTGTTTGGTGGTTCGTTTCACGGTATATGTTAAGTTACTCTTC
TTTTTTTTTGGTATTCGTTTATTTGCTCATCTACTCTTCTTGTTTTCTCC
TCTTTTTACTCATTTATCCTTCGTATGTTTTGTTGCTGATCGCGCGTTCC
AGCGAACTCCAAAAATGGTACTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GCTGTTGTCGTTCCTCAAATACCTGCATGTATGTGTTGTAAGTATACGAC
GTATGGACGACCGAAGATCAGCTATCATGACAAGCCAATAAATCCGCAGT
GTATGTATTCAAGAAGGAACCGACAATGCCCCGACAGAACTGCAAGTCTA
AGCCTTACAAACACAACAAGAAAAAGTTAAACAGGTTAAACGCGTGCGAA
ACGTCAAAGGTTTGAAAAAGGCCCCGTGAAAAAAACAACACTGCGAAGTT
AGCTTGCAACGCTTCACGAGCCAGACGTGAAAGTTTGGGAGCGTTTTCGA
ACTTTGTTTTTAGTACATAATGTCTCGGATCCTTCACAGCATCTATGGCA
TTTCACCTACTTACTGCCTTGTTTAATATATATATATATATATATATATA
TATTTATATCAACCCTCTGTGAACAGGACCTCTGAGCGACAATTGGAAAA
TTTACAAAAACAATCAAGGAGAGCATTTTCCTAACGACGACCAGTTGTGA
ATCATGACGAATATATCAGCGGAATGCTTCACCAGCTCTTAACCCCTTCG
GGTCGCGGTACTTTCTGAAACATCGTTGAAGATTTACGCCCCATTCGCGT
CAAACATCAGCAGTTTTTCGAGCGTCCCAAAGGAGTGCCTAAGAACAGAT
CTAGGTGCCCGAAAACAGATCTGCGATTGGTTGCGTTTCCCCCCCCCAGG
TCTCATTAAAGCTGTTTTCTATTAGCTCTATATGAAAAAATACATGTCCC
GAAAATAGATCTCAGAAAGCAAATCTCAGACGGGCTGCAACCCGAAAAGC
TTAACAGGTCGTTTGTGTATCTCGGGTCTAAAACGACATTTTTTGTCTTC
CTCGATTGATCGGAGTCCCATTGTCTTGGATTCAGTGTAGACCGAGAACG
GTCTACACCGGGCTCTTGCTTCGTAACAACTAAGCAAATGCTGGTAGTAC
ACAAGTGGCTTTTGAAAAATACCCGTGGAGTGAGCCAGCAGGGACGGAAG
ATATGCCTAAGTTTTACCCTACGAGAGGTTGGGCGCCGTGTATCGTGGTT
GAATAAAAAATATGCACGGTCGCTCGGGGCTTGAGTGTGTTTCTACTTGT
CTTGTTTAGTTTAATGCTTTTTTTTCGAGTCCAGATTGAATACCTGTGTA
GGTATCACGTGAAGTACTTCCATCGCACAAGGTTTTTCGACACGCCCTTT
TTCATGATGGCGCTGCTAATGCCCGATGAAAGCTTATTTCACGCCTAAAA
CACAGCTCTGAACGAGACACGAGTCCTTTCTCCATGTACGTGTGTGCGTG
CGACGCCTTTTCGGCTTATGGCCACCATTGTAAAACGTTGCACAACACGA
GCAAGAAGAGTTTCTTCCAGAACTAATGCGAGCGCCTGTGCCTTTCCTAT
TTGAATTTTTAGTTTTCGTGTGCACTATCAAGGTGGCACCTTACAGGTAT
CAATGAACTATTTCTTCTTCCTGCTGGAGGTCCACTGACACTCAGCTGGT
ATCGCCATTCTAATATCGCAATGTAGCTGCAGGGTTTGGGCGCCCGAATT
TGTCGAGATGGGCGCATTGAAGCGACGGTCCGCTACGTTTCGGAGCCCTG
TTTCAGTTTGATTCAAGAAAAGCCCGCTGTCAAGGAAGCACGTTTATTCT
CTACCCATTCATTGGTGCCAGTTGTACGCCATAACCGTTCGTCGTGTGCA
CAAAGGGATGCATAAAAGTGGCGTAAAAAAGTCAGGGAGCAGCAGGAACG
GTCATACTTTGTTGCAAGCAGCATAACCCATATGCTCTGTGAAGTTGAGC
AGCGTAGGGCCAGGGTAGTAGTACTACGGTGAGGGACCAAGTGGGAAGTC
GTGGTGCCGTTCCTTTCTTGATACCTTTTTTTTGGAAATCTCTTGTGAAA
TAATGAATAGATAATCAATCAATCTAGCCGATTTTCCTGCATACAAGTTA
TTACAGTTTTTTTGTCGCGTGGGTGGAATAAAATTCAAGTTGGATGAGTA
ACAACGGGAAAAATGAAGAGAAAATAGTACGTTCGTTTTTTTTCCTTTTC
ACGGAGGCTTTTTCCTTCTCAAGGATTTTTTTTTTCTTCTCACGGAGGCT
TTTTTCTTTTTACCGGGTCTTTTTTCTTTTTACGCGGGAGCACCGGACGC
TCACGTGAAGCGACGGTACTCCATCCTGTAGGTCACGAGCGGGGGGCACA
CGTGAATCGTTATTCAAGTGAGAGCCCCGTTCGGTCATGTCCCGTCAAAA
CATGTTTTTTCACTTCCCCGTCCCGTCCTGTACTCCCGTTTTCACGTGAC
CGGCAAAATCTGATAGAACCGACCGCCGATCGGCTTGAATCAGGTAGAAC
CGGCCGCGAACAAGTCGTAGAAGTGCAAAATCTGACAGAATTTACGCTAC
AGTGCCGCCGAGAAACGGATTCGGTTGGTTCTGGTCATCGGCAAGAGTTG
ATTTTGTACCTCCTAACTCTTGTCACATGCAAAAAGCTCTCTTTTTTGCA
AATTTAAACACAAGTTTCTCGATCGACAAATGAGAATACAATGCTCCGGG
GAGAGACGGCTTCTCGAGGGGACACCGCCTGCTCTGTGCGGGTCGGTTCT
AGGTCTTGGGGTTTAGTGCGGAGCAAGCACTTGGTTTTTGTTCTCGTCAT
AGATGGACTACCCATCCAGGGTCGGACACAGCTAGAAAGCTGTTCCGAGA
AAGGGACAAAATACCATTGGTCGACTGAAACGACTACCGTAACACCCTTT
GATATCGCACCCCGTGTTATTATTGTCCAATCTCAATTTCTCGATAAGCA
AGAGTATGCGCTGCCGAAACAGCAAGTCTATGGAAAGATCTCAATGAGAC
CTATCTTTCCAACATTACCGCAATCGGTGTCGTGGACACCGTCGTTGTCG
AAAAACTCAAGCTTGAAAAATAGTATCAAGGGTTGCGATATCAAAGTGTT
TTACCGTAATTATGGGACCCCTTATTCCTAATAGGCAATGAAGCTTCTTA
TTTCTCAGATCCTAGTTATATTTTACGCTCTTAGACTGTGTGCAAGTATG
CACTATGTTTTATGTTACAGCCGACTGTTCCTTTCTTCAGCTTGACCCCC
CCTGTCTGGGGTCGAGATTCTGGTGTCAAGGGATTACTACTGTCTAATGA
GTCGTTTCAGAGGATCAGTCTGTCCTTGTGTTAAGGAGCACCACCATGCA
ATGAGTCGTTTCGGGCGACTAATTAGTCATTGGATGTATTAAAGTATCTG
CGCTCTCTTCTGAATAGAAAGCCGATTTTGTCAAGAGAAGCCACTTTTTG
TTCCCTCATATGACGAGAAAAAAACGGAGAGATGGAATAGACCACAAACA
GGTTGTTGCACTTGTAGAAAGGACAAAATTATCAGAACTCATCCTACCTA
CCGCGAACCAAGTGCTTTCCCTTTTTGGTCCATCACGTGTGAAAGTCTTT
GTGTAATGCCGATCAAAATCCTGAAAAATTATCAGCAGCCCTTCACGGGC
TGAACAGGTAGTCATGGGCTGCCACAGAGTTCACCTGTCATAATACACCT
CGCTGACCTCTGATTTCGAACCTTCTTGGGGCGTTTACAGTTTGTCAGCA
TCGCTGGTTTGATCAGGGCACGCTTGCACTACGCCTCTATATCTCTGCTA
AATAACACGTTTAAAAACGCTGCAGAAATTGATGTCTGGCTCCTGCAGCA
CTGCAAGCATGTTGTTGTCAGCTCGTCTACTTATATGTATATATATATAT
ATATATATATATATAAATCTATGTTAGGGCTGTGTATGAACGCCCACACG
TTTAAACTATGCTGTACTCCAAAGTATGTTGTACTTCAGAAAGAAAACAT
AGATACTGTGTATATATTTCAAGTATATTAGGATGGCCAAACATTAAATG
GACTACTATGCTATAGTTATTATTCGAAGTAATTTACACGTGTCGTAGGT
GCTATCCAGTGAAGGGTTTTGAACGATTTCGAAGAGAAATGAGCCAAAAT
ATCTTTTCCAACGACCAATACATGACTGTACAAAATATGCTTGAAATGAG
GGTGAAGCTTAAGGATTGTAGGCTCGTTGCGCAGTCAGCGCTAATGTTCG
CAACCAACGGTGTAATCATTGGCAGATGTAGAGCTGCAGTACTGTATCTT
ACTTGCCATACTCTAGAGTATTTGTCATCATGTTGCGTTACACATTTGGT
GATGTGATATAATTTTTTCGATGTTGAAACACTCTGGCGAACCTATGTAT
GAGGCGGTGCGTGCGACACCACCGAACGTTTGCGTCATTGGAAAGATGTT
GCCGAGAGACAATTATCATTAGATAGATATCATGCTCTCTCGATAGTGCG
GTGCCCTCCTTGCCTCTCGATAAGTTATGCGCGTTTGGAAAAAGCCATCA
CATGGATATTGAACGCTCCATACTTTAGTGTGTATACACTGCAACACGTT
CATGAACTATCTGTCGTACATAGTAACGCTACAATCAGCTATACATCAAA
ATAATTTGTACCCGGTGTATTTGTCAGCCGGCGTCAGGTCAGTCGCCCCG
CCAGCCCCCCCTCCTTTTCCCGACGTGATGATCTTTTTGCGCTAACTGGC
CGTGTTAATGCTAATGGACTAGGTTTCGGCAGCGAATGTGATAGATCGAG
TCGTGGCCATCAGGGTTAGGAGTCTCAGAATGGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3418:10633..16969+

>mRNA_H-paniculata_contig3418.9129.1 ID=mRNA_H-paniculata_contig3418.9129.1|Name=mRNA_H-paniculata_contig3418.9129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig3418:10633..16969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGGCGCTGGTCTACCTGGAGGCGGCGGCGCTGGTCTACCTGGAGGGC
AACTGCAGGAGAGATTACGGCGGAGATGCGGCAGTCAAAGCTGGAAGAAG
CCGAGGCAACTGCAGGAGAGATTACGGCGGAGATGCGGCAGTCAAAGCTG
GAAGAAGCCGAGTTCCTTCGCCGAGAGACGGGGGAAAAGGCGAAGGCCTT
GGCGTACGAGCTCGACCAAGTTCGGTTCCTTCGCCGAGAGACGGGGGAAA
AGGCGAAGGCCTTGGCGTACGAGCTCGACCAAGTTCGGGTTTCGGCAGCG
AATGTGATAGATCGAGTCGTGGCCATCAGGGTTAGGAGTCTCAGAATGGC
GGTTTCGGCAGCGAATGTGATAGATCGAGTCGTGGCCATCAGGGTTAGGA
GTCTCAGAATGGCG
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