mRNA_H-paniculata_contig3416.9125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3416.9125.1
Unique NamemRNA_H-paniculata_contig3416.9125.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3416.9125.1 vs. uniprot
Match: A0A6H5L6A2_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A2_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.270e-41
Identity = 93/230 (40.43%), Postives = 127/230 (55.22%), Query Frame = 3 
Query:    3 DDEAKEFCAEIGLERFGDYPRFFFYGSGKFHDHDRLTGMFRKP-PTAHESSVLFSPRAPLYAEVLYDWVKTMNVISGGNRLMRWVNPFSW-----DRRSSMEKQLAEEMAALQ------DEALDWVPPPPDPLLYGAGDAYQHLALSTTPGSYESELEVCIMDLVEKYCQLAGIKEKEPFCTTVEACAGELDFRHDMCWPDHCPMQKEGCELVSACLTPTVHEMYKDALE 656
            D  A  FC EI L+    YP F F+G+GKFHDHD L+GM   P PT H+SS  F   A +Y EVL  W KTM+ ISG NR+M  +N F       DR +S E+ LAE + AL+       +A+         L YG GD Y  L        +E  +  C++D+  +YC + G+KE +P+C T+E+C    +F  D CWP  CP Q+ GC++ S CLTP V + Y   ++
Sbjct:  114 DTTAAAFCQEINLQF---YPTFMFFGAGKFHDHDPLSGMVLGPRPTEHDSSAKFPAGAVVYHEVLAGWTKTMHFISGYNRVMERLNVFGSRGGRKDRAASEERLLAE-IEALERKNHQLQQAMTGGEAQESSLPYGHGDPYNELWKVAYDAEFEPVMS-CVIDMAMQYCDVEGVKESDPWCRTLESCIA-TEFVGDECWPSSCPFQEGGCQITSFCLTPEVFDAYMQLID 337
[Close]
BLAST of mRNA_H-paniculata_contig3416.9125.1 vs. uniprot
Match: D7FNN2_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN2_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.280e-18
Identity = 63/144 (43.75%), Postives = 78/144 (54.17%), Query Frame = 3 
Query:    3 DDEAKEFCAEIGLERFGDYPRFFFYGSGKFHDHDRLTGMFRKP-PTAHESSVLFSPRAPLYAEVLYDWVKTMNVISGGNRLMRWVNPFSW-----DRRSSMEKQLAEEMAALQ------DEALDWVPPPPDPLLYGAGDAYQHL 398
            D  A  FC EI L+    YP F F+G+GKFHDHD L+GM   P PT H+SS  F   A +Y EVL  W KTM+ ISG NR+M  +N F       DR +S E+ LAE + AL+       +A+         L YG GD Y  L
Sbjct:  114 DTTAAAFCQEINLQF---YPTFMFFGAGKFHDHDPLSGMVLGPRPTEHDSSAKFPAGAVVYHEVLAGWTKTMHFISGYNRVMERLNVFGGRGGRKDRAASEERLLAE-IEALERKNHQLQQAMTGGETQESSLPYGHGDPYNEL 253
[Close]
BLAST of mRNA_H-paniculata_contig3416.9125.1 vs. uniprot
Match: D7FNN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.350e-12
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:  444 CIMDLVEKYCQLAGIKEKEPFCTTVEACAGELDFRHDMCWPDHCPMQKEGCELVSACLTPTVHEMYKDAL 653
            C++D+  +YC + G+KE +P+C+T+E+C    +F  D CWP  CP Q+ GC++ S CLTP + +  +  L
Sbjct:    3 CVIDMAMQYCDVEGVKESDPWCSTLESCIA-TEFVGDECWPSSCPFQEGGCQITSFCLTPEMFDANERVL 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3416.9125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6A2_9PHAE3.270e-4140.43Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D7FNN2_ECTSI4.280e-1843.75Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D7FNN1_ECTSI3.350e-1240.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3416contigH-paniculata_contig3416:7383..15911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-01_004880.1
Exons6
Model size1523
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3416.9125.1prot_H-paniculata_contig3416.9125.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3416 8178..15795 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.2515397-UTR-H-paniculata_contig3416:7382..81771622930054.2515397-UTR-H-paniculata_contig3416:7382..8177Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3416 7383..8177 -
1691481127.915957-UTR-H-paniculata_contig3416:7382..81771691481127.915957-UTR-H-paniculata_contig3416:7382..8177Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3416 7383..8177 -
1622930054.3663313-UTR-H-paniculata_contig3416:15795..159111622930054.3663313-UTR-H-paniculata_contig3416:15795..15911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3416 15796..15911 -
1691481128.0025694-UTR-H-paniculata_contig3416:15795..159111691481128.0025694-UTR-H-paniculata_contig3416:15795..15911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3416 15796..15911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.2643678-CDS-H-paniculata_contig3416:8177..82701622930054.2643678-CDS-H-paniculata_contig3416:8177..8270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 8178..8270 -
1691481127.9296732-CDS-H-paniculata_contig3416:8177..82701691481127.9296732-CDS-H-paniculata_contig3416:8177..8270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 8178..8270 -
1622930054.2819111-CDS-H-paniculata_contig3416:9949..100631622930054.2819111-CDS-H-paniculata_contig3416:9949..10063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 9950..10063 -
1691481127.941866-CDS-H-paniculata_contig3416:9949..100631691481127.941866-CDS-H-paniculata_contig3416:9949..10063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 9950..10063 -
1622930054.2966712-CDS-H-paniculata_contig3416:10576..106931622930054.2966712-CDS-H-paniculata_contig3416:10576..10693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 10577..10693 -
1691481127.9508297-CDS-H-paniculata_contig3416:10576..106931691481127.9508297-CDS-H-paniculata_contig3416:10576..10693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 10577..10693 -
1622930054.3172095-CDS-H-paniculata_contig3416:12304..123791622930054.3172095-CDS-H-paniculata_contig3416:12304..12379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 12305..12379 -
1691481127.9607103-CDS-H-paniculata_contig3416:12304..123791691481127.9607103-CDS-H-paniculata_contig3416:12304..12379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 12305..12379 -
1622930054.334485-CDS-H-paniculata_contig3416:13555..137261622930054.334485-CDS-H-paniculata_contig3416:13555..13726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 13556..13726 -
1691481127.979288-CDS-H-paniculata_contig3416:13555..137261691481127.979288-CDS-H-paniculata_contig3416:13555..13726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 13556..13726 -
1622930054.3522966-CDS-H-paniculata_contig3416:15753..157951622930054.3522966-CDS-H-paniculata_contig3416:15753..15795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 15754..15795 -
1691481127.992405-CDS-H-paniculata_contig3416:15753..157951691481127.992405-CDS-H-paniculata_contig3416:15753..15795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3416 15754..15795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3416.9125.1

>prot_H-paniculata_contig3416.9125.1 ID=prot_H-paniculata_contig3416.9125.1|Name=mRNA_H-paniculata_contig3416.9125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=204bp
MFRKPPTAHESSVLFSPRAPLYAEVLYDWVKTMNVISGGNRLMRWVNPFS
WDRRSSMEKQLAEEMAALQDEALDWVPPPPDPLLYGAGDAYQHLALSTTP
GSYESELEVCIMDLVEKYCQLAGIKEKEPFCTTVEACAGELDFRHDMCWP
DHCPMQKEGCELVSACLTPTVHEMYKDALEAREGDERISLLTVTKTPVSK
DLD*
back to top

mRNA from alignment at H-paniculata_contig3416:7383..15911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3416.9125.1 ID=mRNA_H-paniculata_contig3416.9125.1|Name=mRNA_H-paniculata_contig3416.9125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8529bp|location=Sequence derived from alignment at H-paniculata_contig3416:7383..15911- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATGACGAAGCAAAGGAATTCTGTGCCGAGATTGGGCTAGAGCGCTTC
GGGGATTACCCGAGATTCTTTTTCTACGGCAGCGGAAAATTCCACGATCA
CGACCGCCTTACCGGAATGTTTCGGAAACCGCCGACGGCGCACGAGTCGA
GCGTGCTGGTAAGAGTTTTTTTTTGTTTACAGAACGGTTCAGTTTTTCGT
CAGCCTAACCTACTTGTATTGTAGGCAGGGCTTTTCGAAGATGGTCGAGA
ATCAATCACTTAACCTGAGAAATGTAACTGCAACGGGGGGAGGTCGAGGC
AGGACGGCAAACGTATGCCAGTCGCCGTTGGTTTTCATCAACATGTGATG
TGTGAGGAAGTATCAGTCCCACGTTTTCGTCGTCAAGGCTTGGCAGGTTT
GTGTGCTTGCGCGGCCGGTAGTCGCTTAACTGTATCATTGCATGCTTGGA
GTGTTGAATTCAGCGCAAAACAAATGACCTAATGAAGTAATGGATGTACA
TAAAGTTTTTTTGTTTTTTAAATTTTCAGTTTCTGATTTGTTGCCACAGA
TTTCGTAAATTGAAGAGTGTCATTCTTTAGTCCTTCCACAGTTTCTCAAG
TTAAGAAAGGGTCAAGTGCCTCAAAACCGGTTTGCGCAGATTTTGAAATT
TGACAAATTTGATACAAGATAGATTCGCATGCATCCTGCATGCATACATT
TTTTTTTTTTTTCGTGTACTATTCTGAGAATAGAAGAGTTTTACCCCCGA
GTTCATGACGTATGGTGGCATAGTTTTGATGTAATGCCTGCCCCGAACCC
TCCAACCTGGGGGGTCAAGAGCGACACAGAATTTGGGCGGCTTCAGAAGC
TACGGTGGTCACATTTTGCACGCGAATGGCTCGTTACAAGGGTCAGGATT
AGGCTTGGGGTTAGGTTTTAAGTCTGTGTCAGCTTTTCCCAGCACGCAAA
CTCCGGAGCCGAAAATAAAAGTTGTTACATTAAACCATGGTATATATCAA
CCAGTATGTATGAATCAACCATGTCATGGTGAACTTTGGGGGGTAAAATA
GTTTCGCCTCTCTTTTGAAAAAGGTAAAGATACAAGCAATCGCGCGGCAA
GGGTCTGGGGATTTGTGTCATAATGCAAACGTTCAAGCGACAGAGAGAGG
GGGGCAGAGGGAGGGTTGTCTTGGCGCAGGGAGGCGTCTGGCATTTTGAA
CGATGAAAGCGATAGCAGTGCTGACAGCTCGCAGACAGACGGTAACAGTT
TTGTAATATCTGAGGACTGCTGACCGGATTGGTTTATTCCCGAGTGGTGG
GTATTAGACCAACCGCCAAGTGTTACCGAATAGCTCGCATATCAAATTTG
TATCTTTTATCCTAGAAATTTTTTCCGAAAAAAATAACTCGCTCAAATCT
CAACGTTTCTACCCCCCCTGCCCCCATTTTTTTTTTTTCCCGTCGGTTAC
GGGTGGTGAGCAGAAGAAGACATGTACCCACGAAGAAATCGATTCTGTAC
TCTTGCACTTTGGTTATCGTTCGTAGCCCCTCCCCTATATGATGCTGCTG
GTTATACCAGCGATGGTGATGTGAACGGGATATGGGCGGGTTCGTCACTG
TGGAATAGCCATATTCTGAACAAGCACGCGTTCCCCTTGTCAGGACTGCG
TATGAGGTCATATTTGTTACGGAGCATCTGGAACAGAGATTTTTCCAGCC
GCGCACACATAGCCCGGGGGACGGTTTCGGCCTGTTGGGGGCGCTAGCGT
GCTAGGAAAGCGTGGTGTTGAGGTCCTGTTGTATTTGCAGTCCCTGCGTT
ACAAACTCTGTTACGTGCTGTGCACAGCCAGAGACGACAGGCCAATCAAG
GAACATGCACAAGTAGACAGACAAACGGATAGATCTCTGTACACTCTGTG
TTGTTGTGTGTAGATTGAAATTCCCTCTAGCTCGTACGGGCTACGCGTGT
TCTCTTCTATCTGCCTTAAGAACCGCTTGAGAGTGTCGGTGTCTGTCTTT
GTTGCTGTTGTTGTAGTTGTAGTTGTAGTTGTCTAGCGTCACTCGTGGTG
TTCTAGCTTCTCCTCGTACAGTATACCCTCGCCCTTATCTCTCTGTCTGA
TGCCCTGTTGATGGCGATCTTGTTGCGTTCCGTTTGTTTTTTCTTTGGGG
GGGGGGATTTGTTGAAATATTTGACGGGAGGGCAGTTCTCCCCTCGCGCC
CCACTTTACGCTGAGGTTTTGTACGACTGGGTGAAGACGATGAATGTTAT
CAGCGGCGGGAACCGGTTGATGCGTTGGGTCAACCCGTTCAGCTGGGACA
GGCGAAGCTCTATGGAGAAGCAACTGGCGGAGGAGATGGCGGCGCTGCAA
GATGAGGTGTGTGTGTGCTTTGCGTCGTGTGCTCTCTCTCTCTCTGTGCT
TGTATTTTCTATCCTTTTCCCTCTTCTGGATTTGAAAGTTGCTCATAAGT
ATTATAGTACATAGCCATACTCCAAAATACATGTTAATGGCATCGAAAAT
TCCATACATGTATCTATAAGTTTTACTTCCTGGATGTGGAAAGCGAAGGG
ATTGCCAAGTGAGGGTGAAGAAGCAGGAATGGCAAAAGGAGAAATGCATG
CTCTCGGATATAACGAGATCTGAACGGTCCGGAAACGCAATCAGTTCCTA
TCATTCCTACGTCAGTCAGTCGCCGGTCAACCATTCACTCAAGCTCATTC
GCGCGTCAGCATACACGTGAATCATGACATGCGCTCGACGGGCCTCAGAA
TACGCTAAATTTCGAGGGTCAAAACGTCAGGACTGACGGAGGACATATCC
ACAACCGTAAAATGATGCTGGCTTCGGTGGCTGTTCAGTTTCCTTTTAAT
ACAAGACTTTGCGGGTCCGCCGCGACTGCTGACGCCCCCTCCACCTCCTT
CTCTTCGGGAACGGACGCTTACTTGGCGTTAACGGCTCTCGTTTTGGTCA
TGGACCGATAAAGTAACTATGCGATACTGCGAAAGAGGCCCACATGAGAT
TTTAGCCTGTTCAGGTTCGATTGGAGGCTTGGAGCGATGGGGTCATCCGT
TGCTGCAAGACGCGAGGCATGCCTCGCTCGCAAAACACGGGACGCGGGGC
CGTTTGAAACGAAATAATAATAAGTGTTTCTTATTTGAGAATGTAGGCTT
ATGGTATGTGTCGATATGTGTTGACGTGTTGGAATATATTTGCTAGGGTC
CGCGGTTATTTTGTCTGCTGCACACGCAAGTGATACCGACATATTCCCTG
GTACAGTTTGTTGTTGTGAAACTGTGTGTCTAGTTGATTATCTCGTCGTG
TGCTCAGCGAATCGCCGTGCATGCAATAAATCCAAAACGATAGCTCTTTC
GGTAGGAAGGTAAATAGAGAGAGAGGTACGTTCCTTTTCAAAATACTACC
CGAAGCTGCGCTGTTGCCGACAGAACAATTATACTAACGAGCGTGTTTGC
TCCGCGTGCCCCCCTTGGGTGGTTTACGGTTGCTTCTGTATCGCGATGTC
GGCGATCGACGCCACGATGGCGGCTATGACAGGCGTTGGACTGGGTGCCC
CCCCCGCCAGACCCGCTCTTGTATGGAGCCGGTGACGCGTATCAACATCT
TGCTTTGGTGAGTATCGTAAAGTGAAATATGGAGGGATCGATCGCACTGC
CGGGGGCGCGAACACTTTTTGATTGCGATTATCTCTGGAACTACGGCATC
AGCTACTGACAACGAACAACGACAAAAGCGTGCCTTTGGAATTCGATCGC
GTGAGGTTTCTGTTCCCGAGATGTGTCGTGTTTAATTTTTTTTTCGTACT
CCTGGGTGCAATACCTCTGGGTTCCACGGTTGCATGGCTGTTGTGTTCTA
TTTCTTTTTTAGTGTTAGGTGCGTTTGTCTTTTTGGTTCGCCCCCCCTCC
CCAAATATGGAGTTGTTCTCTTTTTTGCACGGAAATGACAAATAATGATC
ATGGTGAGCATTTCGAGGGAGGTTCTCACAGCATGGCAGCAACATGGTAC
ACGGTACCTTTATGGAACCTATCAGTTCATATCCTCCCTCCATCAGAGTA
CAGTAGCCGATGTAATCACAGCTCAACTATTGTTGGTTAGTCGTTGTTGC
GGTTCAGCGAAAAAGAAGGGCGAGGAAACACACATTTACCGCCATAATAA
TCCGTTTGTGGTTCGTCTACCCACGTTGTACTGGTCTTTTTTCAGTTTTC
ACGAATCCCACCCCTTTTCGTATGCCCCTCCCTCCAAGAGTCGTAAACTC
TCAACTCCGCGTGTTGGGAATAATTTGGCATGTCCTTGGAGGGGTTCAAC
AGGGCTGGTTCGGATGTGTGCAGGAATGATTTTTGCCTCAACTAGTTTTC
CGTTTTGAAACGATCGCCTTTTTTACGAAGGCAGCCGAAACAGCTTATTC
TTCAGTGTGATGATGTTCATTCACCCTGCAGTAAGATATTTGGGTGTGTC
ATTATGGGGCCTGATTGGCTGTAGAAAACGAGAAAAACTTGGTGGTCAAG
GGAGATGTACGGGGGAACTCTGTGTTCTTGTTTGGTATTGTTTGGTCCCC
GATAAGCGTTACGTTCTGTGAAACGGCGTGTTCCTCAACGTGGTTCCCTT
CCATCGTATAGTGTGGCATGTGTCCCATCGTCTCTCTGGAGGATGACCTT
TTTCAGCTGTGTTCGTAAAATTAATCAACGATTTCGAAATGAATACTAAT
GACTATACCTCCACCAGTGAATGCAGAGTTGAATCGCTGCCTGTAGCTCT
GGTGTATAGAAGCGACCAGAATCGCGTAGATTATTAAGCCGAGCATAACA
TGGTTGGCGTAGTAATGATGTATGGTATTGAACGCGCTTTTCCATGTGTT
GATAGTGTAATGGGTCTTTGTGTACACCGTGTCGTCGTGTGACGGATTAG
TAAATTTTATATGTTATTATTGTTGCTCAGGTCAAGATTTGTTGCCAGTT
TGAAGTATGACCTATATATTATACGTGGTATGTTTTTGAGGTTTTAGTTT
CGAAATGATTCAAGTGTTTTTTTTCAGAATTTTGTGTATTATATTGAGTC
GAATCAGTTCAGGCGGGAAATACTACACGAAAAAATTGCATTACTGTACA
GTACCAACCAACAGCACGCAGACACACTTGTCATGTGTATTTTTGTTTGA
TCTTTGGTAACGTGATCCCTCTCATAATCGCTCGGCGGGCACTATGATGT
GATATGATACAATAACAGTCTACTACACCGGGCAGCTATGAATCCGAGCT
GGAGGTGTGCATTATGGACCTGGTGGAGAAGTATTGCCAATTGGCTGGAA
TCAAGGAGAAAGAGCCATTCTGCACAACTGTAGAGGTGAGTACGTCCCCG
GATTTGCGTGTTGTTTGAGGAGGGGAGGGAGGGGGGGAGCAGTGATTTAC
AATATCTCTTTTTTGTCTCTATCGTTTTACTAGTGTCAGGTGATTCCAGG
GCTCGTTTTTTGTGCGATGACTGCCATGATAGAGATGGATATACACACAT
ACCGTACTCCACCCATTTTTTATACAAGTTTGCTAATTCAAGTAACACGA
CTCAGAGGTCAGATTAGCTGCATAATTTCAACATAGGTACGATAGACTTG
TTGTGTGAGCGTTATAGGTCCATACCACCCCCTCCCCTTAGCTCCGTCCT
TCCGAGGATCGATGGTCCGGTCTATGGTCTAAGAGCTACGGCATGCAGAA
TATGAGGACGCTCTCCCTCACACCCGACCCGCGCGATACAACCGGTCATG
ATTCGAACCCCAACATACCTCTCTTCCTCCACATTCATATTCTCTGCGTA
ATTTATGGCTCCCCTCCTCAATGCCACTCTTGTCTCGATCCCATTCAGGC
GTGCGCGGGTGAGTTGGACTTTCGGCACGACATGTGCTGGCCTGACCACT
GCCCTATGCAGAAAGAAGGTTGTGAGCTCGTGAGCGCGTGTCTTACTCCT
ACGGTGCACGAGGTGCGTGTTTTTTTTTTTTTTTCTGTGTTCATAGTTGA
TCCTTTTTCTTCTTTTTTTCCCTTATCTAGGTGGTCTACGTGTGTTAAGT
ACGAGTTGCAGACGGAGCTCAGTTTATCGTCTAGTGGAAGGCGCATCACG
TCGAGTTGTTCTCCATTGATTGATTGAAAGCAAGAGAGTATCAGAAAGTA
CGCTGCAATAGGAGAGGGATGGAAAGTCGGCTGAGGAATCGATCCTGATT
GGCCCGAGAAGGTTCAACAAACGGTATGTGCCAGCTGGCAAGCTACAACC
ATTGCAACTATTGTAAATATTCTTACGTCCACTATTCCCGTTAGGTCAAT
GGTAACGTTTACCATTTCACGGGTTATATCTGCTAATATATAGTCGAATA
TACCCCCCAAATAGTTAGCGTCTAGCTCGTACAAATAGCATCGCAAGCTA
ACTTGGCGGCATATGATCATTTTTTTTCAGCCTGTCATCAAATTTTCTAG
CCGTGCGATGCGCGCATCATCGGATTTGTCATTTTTTAGGGATGCGTACC
TACATAGCATACATACAATGTGTACATGTTTGCCCACTGCTGAACCGTAC
CCCATGCATCGAGAGTACACGTTTGTCCTCCACTGAACCGTACAAGCTGT
ACGATGCGTACCACCTGCATGTTCATGGGCGATCCTTACCCTACGCATCG
TTTGCGCATGGTCGCCTGACACTGATCCGCAGCGTACGGAGTGCATGGAT
TATGAGCGGTCCGATGTGTGAAACGGTCATAACTTACTTCATGCTTCGAA
TATGAACACTTCTTAGAGCATTCACGATGGAAATTACAAAAAAAATAAAA
TGTTTGCATGAAGGTTTAAAATGTGTGGGCACCTCACTTCGAAGTTTTGA
CCCCGTTTCATTTTTGTTTGACTGTTTTCCGGAACAATCGTAGATAGTCA
TGGGTACATGGAATGTACGTACTTGCTCATGCTGAAGCGAATATCGTTAT
TTGATTTTCGTTGGGAATGCTCTGGGTATTGGTGAACGGGTTAGCAGGCA
AACCGTGTGTTGCTGTCTATGTATGTCTCATGTAGAGTAATAGATGGAGG
ATCAAACGCTGTTTTTCACATGCTTACAGGATTTTGGATCCATTCCTACG
TGTGAAGACGGATCCGTCTGTACAGCTTCGTACGATCCGCACATGTTTAG
CCTGCTGTGAATCGCACAAGCTGTACGAAGGAGTGATGCTGACATGTTTG
CTCATTGCTGAGGCGTTCAAGCTGCACGATATATGTATGTTCGCCTGTAC
CTCGCACAGCATAAGCCCACATTTATGCCCAACTGATCCCCGTACATGCT
GTATATCACGTTCCCACCCTCCCACGAGATTAACATTTTTCGACTTCAAT
GCTAAATTCTGATGACATCGTGAGTAGCACCATTTCGCACATCTCGCAGC
AGAGATATGCCATCAGAGAAATGGGTGCTCCTTCGACAGCGCAGCGGGCT
CTGTGCTTCTCGAGAACCAAGTTTGAAAAGTAACACTGATCGATCACCTC
ACCTAAGGTGACTAATTCATTTACACTGTAACCCACTACTGTACTCGAAC
CAAGTGACGGAGCATATGGAGTTAACTCGCCGCCGCCACTATCTCTCTCC
TGCCCCGTGATGATACTGCGTATCCTTTTATGTCGGGCCAGATGTATAAA
GACGCTTTGGAGGCGAGAGAAGGGGACGAGAGGATTTCGTTGTTGACAGT
GACAAAGACACCAGTTTCCAAAGACCTGGACTAGTATATCTCCCCAGGGG
CTGGTGGAGAAATAGGCAGATGATGACGGGATCAGGGAAACGGCGGGGTT
GATTGAGGCATACTGTCAACACCCGGTCGTTATTCCGCCGCGTTAGAGCT
GTTTCTTCTTCCAATATGGTTTTTTAGTTAGATGGAATCGCTGTACCACA
CCAAATATATATTTCCTTTCATTTTTCTTGCCGGGCGGAGTTTTTCGGCG
AATGGAACCAGCATGTTAGAGTTGTACTTTTGTCCGTAGCGTATTTGGTG
TTTTTGTGGGTGCCTAGCCCAAGCATATCGGACACCAAGTGTTGCTCCTT
GAGGATGGAACCGTGATCTGGGTAGAGTAGATTCGATGGTGCTTTATCTT
GTGTTATTGTACGGATAATTCTAGCTCCACTACAGTAATTTTGCATTCAT
TACATGTGTATAGACGTCGACATTTTCTTCAATACCATTCTTGCCCGTGA
TTAGGTGCATACGTACCAGGACAGAATGCAGAAAGGGGGGAAAGAGCCCA
CTTCTTTACTTGTCATTGACCAATTATTCATGTGCGTTGGTCTTGTACAC
TGGTGTTGGTATGTCATAAAATTTATGCTCAATGTCCTGATGGGAAGATA
ACGACCTCTTCTATCCGAAGTGGGTATAACTCTCACTTCACGTGTGTCCC
CGCATGAAGGAGGGGGAGTGAAACGGCACCCTCAATTTTCTGATCCGTCA
AACTACTTTGTAACTTGTGGGAAACCAATAATCATTAGCTTGGTGGAGCA
CTTATGGTTTGAACAATGATACCATCAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3416:7383..15911-

>mRNA_H-paniculata_contig3416.9125.1 ID=mRNA_H-paniculata_contig3416.9125.1|Name=mRNA_H-paniculata_contig3416.9125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig3416:7383..15911- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCGGAAACCGCCGACGGCGCACGAGTCGAGCGTGCTGATGTTTCG
GAAACCGCCGACGGCGCACGAGTCGAGCGTGCTGTTCTCCCCTCGCGCCC
CACTTTACGCTGAGGTTTTGTACGACTGGGTGAAGACGATGAATGTTATC
AGCGGCGGGAACCGGTTGATGCGTTGGGTCAACCCGTTCAGCTGGGACAG
GCGAAGCTCTATGGAGAAGCAACTGGCGGAGGAGATGGCGGCGCTGCAAG
ATGAGTTCTCCCCTCGCGCCCCACTTTACGCTGAGGTTTTGTACGACTGG
GTGAAGACGATGAATGTTATCAGCGGCGGGAACCGGTTGATGCGTTGGGT
CAACCCGTTCAGCTGGGACAGGCGAAGCTCTATGGAGAAGCAACTGGCGG
AGGAGATGGCGGCGCTGCAAGATGAGGCGTTGGACTGGGTGCCCCCCCCG
CCAGACCCGCTCTTGTATGGAGCCGGTGACGCGTATCAACATCTTGCTTT
GGCGTTGGACTGGGTGCCCCCCCCGCCAGACCCGCTCTTGTATGGAGCCG
GTGACGCGTATCAACATCTTGCTTTGTCTACTACACCGGGCAGCTATGAA
TCCGAGCTGGAGGTGTGCATTATGGACCTGGTGGAGAAGTATTGCCAATT
GGCTGGAATCAAGGAGAAAGAGCCATTCTGCACAACTGTAGAGTCTACTA
CACCGGGCAGCTATGAATCCGAGCTGGAGGTGTGCATTATGGACCTGGTG
GAGAAGTATTGCCAATTGGCTGGAATCAAGGAGAAAGAGCCATTCTGCAC
AACTGTAGAGGCGTGCGCGGGTGAGTTGGACTTTCGGCACGACATGTGCT
GGCCTGACCACTGCCCTATGCAGAAAGAAGGTTGTGAGCTCGTGAGCGCG
TGTCTTACTCCTACGGTGCACGAGGCGTGCGCGGGTGAGTTGGACTTTCG
GCACGACATGTGCTGGCCTGACCACTGCCCTATGCAGAAAGAAGGTTGTG
AGCTCGTGAGCGCGTGTCTTACTCCTACGGTGCACGAGATGTATAAAGAC
GCTTTGGAGGCGAGAGAAGGGGACGAGAGGATTTCGTTGTTGACAGTGAC
AAAGACACCAGTTTCCAAAGACCTGGACTAGATGTATAAAGACGCTTTGG
AGGCGAGAGAAGGGGACGAGAGGATTTCGTTGTTGACAGTGACAAAGACA
CCAGTTTCCAAAGACCTGGACTAG
back to top