mRNA_H-paniculata_contig34157.9123.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34157.9123.1
Unique NamemRNA_H-paniculata_contig34157.9123.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34157.9123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34157contigH-paniculata_contig34157:7..567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.093157-CDS-H-paniculata_contig34157:6..3121622930054.093157-CDS-H-paniculata_contig34157:6..312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34157 7..312 +
1691481127.843931-CDS-H-paniculata_contig34157:6..3121691481127.843931-CDS-H-paniculata_contig34157:6..312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34157 7..312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.107345-UTR-H-paniculata_contig34157:312..5671622930054.107345-UTR-H-paniculata_contig34157:312..567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34157 313..567 +
1691481127.8570051-UTR-H-paniculata_contig34157:312..5671691481127.8570051-UTR-H-paniculata_contig34157:312..567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34157 313..567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34157.9123.1prot_H-paniculata_contig34157.9123.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34157 7..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34157.9123.1

>prot_H-paniculata_contig34157.9123.1 ID=prot_H-paniculata_contig34157.9123.1|Name=mRNA_H-paniculata_contig34157.9123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
QDGFKISPVLFLKIDSPSHEHFGIGGLERRRSFCCALPVLSYSSKHASWV
DDPLLNEGQVHAKTRQETTNKKRLVRKTKATILSYLQQEKQKKILQVFSR
Y*
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mRNA from alignment at H-paniculata_contig34157:7..567+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34157.9123.1 ID=mRNA_H-paniculata_contig34157.9123.1|Name=mRNA_H-paniculata_contig34157.9123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=561bp|location=Sequence derived from alignment at H-paniculata_contig34157:7..567+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACGGTTTCAAAATATCTCCCGTTCTCTTCTTGAAAATAGATTCTCC
ATCTCACGAACACTTTGGTATCGGTGGTCTTGAGCGACGTCGATCGTTTT
GTTGTGCTTTGCCCGTGCTCAGTTACTCCTCAAAACACGCAAGTTGGGTT
GATGATCCACTGCTCAACGAAGGACAGGTGCATGCCAAAACACGGCAAGA
AACAACAAACAAAAAACGATTAGTCCGCAAAACAAAAGCTACTATTTTGA
GTTACTTACAACAAGAAAAACAAAAGAAAATTTTACAAGTTTTCTCCAGG
TATTAGTCTGAAGGCTCCACTACTATCAACACAAGACAGAAAAAAGAAAA
GAACAGATTAACAACATATGGCCTCCAGAAAAACTTGAAAACGGTATCAA
AAGAAACACCAGTAACAGCCACTATACCGTTTGACTAAAGAGACCAGGTA
TATCAAAAGATACTGTTGTCCTCTATAGACAACAGTATTCTCCATAGAAA
ACTGCTGTAATACAAAAATGTTCTATTTTTAGCTACCTTGCTAAATACCC
CCCCCACCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig34157:7..567+

>mRNA_H-paniculata_contig34157.9123.1 ID=mRNA_H-paniculata_contig34157.9123.1|Name=mRNA_H-paniculata_contig34157.9123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig34157:7..567+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACGGTTTCAAAATATCTCCCGTTCTCTTCTTGAAAATAGATTCTCC
ATCTCACGAACACTTTGGTATCGGTGGTCTTGAGCGACGTCGATCGTTTT
GTTGTGCTTTGCCCGTGCTCAGTTACTCCTCAAAACACGCAAGTTGGGTT
GATGATCCACTGCTCAACGAAGGACAGGTGCATGCCAAAACACGGCAAGA
AACAACAAACAAAAAACGATTAGTCCGCAAAACAAAAGCTACTATTTTGA
GTTACTTACAACAAGAAAAACAAAAGAAAATTTTACAAGTTTTCTCCAGG
TATTAGCAGGACGGTTTCAAAATATCTCCCGTTCTCTTCTTGAAAATAGA
TTCTCCATCTCACGAACACTTTGGTATCGGTGGTCTTGAGCGACGTCGAT
CGTTTTGTTGTGCTTTGCCCGTGCTCAGTTACTCCTCAAAACACGCAAGT
TGGGTTGATGATCCACTGCTCAACGAAGGACAGGTGCATGCCAAAACACG
GCAAGAAACAACAAACAAAAAACGATTAGTCCGCAAAACAAAAGCTACTA
TTTTGAGTTACTTACAACAAGAAAAACAAAAGAAAATTTTACAAGTTTTC
TCCAGGTATTAG
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