mRNA_H-paniculata_contig34143.9119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34143.9119.1
Unique NamemRNA_H-paniculata_contig34143.9119.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34143.9119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34143contigH-paniculata_contig34143:18..1223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_000950.2
Exons2
Model size1140
Cds size651
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34143.9119.1prot_H-paniculata_contig34143.9119.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34143 18..734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.686893-CDS-H-paniculata_contig34143:17..2231622930053.686893-CDS-H-paniculata_contig34143:17..223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34143 18..223 -
1691481127.7037804-CDS-H-paniculata_contig34143:17..2231691481127.7037804-CDS-H-paniculata_contig34143:17..223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34143 18..223 -
1622930053.7025106-CDS-H-paniculata_contig34143:289..7341622930053.7025106-CDS-H-paniculata_contig34143:289..734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34143 290..734 -
1691481127.715329-CDS-H-paniculata_contig34143:289..7341691481127.715329-CDS-H-paniculata_contig34143:289..734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34143 290..734 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.7179465-UTR-H-paniculata_contig34143:734..12231622930053.7179465-UTR-H-paniculata_contig34143:734..1223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34143 735..1223 -
1691481127.7259712-UTR-H-paniculata_contig34143:734..12231691481127.7259712-UTR-H-paniculata_contig34143:734..1223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34143 735..1223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34143.9119.1

>prot_H-paniculata_contig34143.9119.1 ID=prot_H-paniculata_contig34143.9119.1|Name=mRNA_H-paniculata_contig34143.9119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
MGWLKFSPNDNCCNEEGHATPSMGWLKFSPNDNCCNEEGQATPSMGWLKF
YPNDNCCNEEGHATPSIDWLKFSPNDNCCNEEGHATPSIDWLKFSPNDNC
CNEEGHATPSIDWLKFRTNVNRCNEEGQATPSMGWLKLDPNVNCCNEEGQ
ATPSMGWLKLDPNVNCCNEEGHATPSMGWLNTNLNVNCCNEEGQATPSMG
WLKLDPNDNCCNEEGHA
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mRNA from alignment at H-paniculata_contig34143:18..1223-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34143.9119.1 ID=mRNA_H-paniculata_contig34143.9119.1|Name=mRNA_H-paniculata_contig34143.9119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig34143:18..1223- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCATGCCGTTTAATCGGGGTTATTACATGACATCCTTCGAAAACAATT
GAGCACACAAACTGCAAATTCGAAGCAAGCCGAATTTATCACAACCGGGG
GGTGGCGCCACGGCACATACCCGTGCTGTTTTTGGCTGTTTCGTGATAAG
CAACCAATTCCCGACGCTGTTGCCTCCCCACCGGAACAACCCAAACCGCT
CTTTCGTTCGGTGGTAATTTAACAACACCGCCTTCGTAACAAGTAGTTGG
GGACTAAACCAAGGAACCATGCTGTAGGGTTACAGTCCCTACTCCAAAGC
TTCCCATTATACAGGCCAGCCTCGACCATTTCCTTTCTTTACCTGAAGTT
GCTTTCGACTCACTACCAACGAAACACCATATCAATGTGACACCACACCG
CGTCAATCCACTTCCCACCGCCAACGCGCTGGCGATAACCATTCCCGAGC
ACCAATTTTTGCAGCGAAGCAGGTCATGCTATCCCCTCAATGGGCTGGTT
GAAATTCTCCCCGAACGACAACTGCTGCAACGAAGAAGGCCATGCTACCC
CCTCAATGGGCTGGTTGAAATTCTCCCCGAACGACAACTGCTGCAACGAA
GAAGGCCAAGCTACCCCCTCAATGGGCTGGTTGAAATTCTACCCGAACGA
CAACTGCTGCAACGAAGAAGGCCATGCTACCCCCTCAATAGACTGGCTGA
AATTCTCCCCGAACGACAACTGCTGCAACGAAGAAGGCCATGCTACCCCC
TCAATAGACTGGTTGAAATTCTCCCCGAACGACAACTGCTGCAACGAAGA
AGGCCATGCTACCCCCTCAATAGACTGGTTGAAGTTCCGCACGAACGTCA
ACCGCTGCAACGAAGAAGGCCAAGCTACCCCCTCAATGGGCTGGTTGAAA
TTAGACCCGAACGTCAACTGCTGCAACGAAGAAGGCCAAGCTACCCCCTC
AATAGACTCGTTAAAGTTCCGCCCGAACGTCAACTGCTGCAACGAAGAAG
GCCAAGCTACCCCCTCAATGGGCTGGTTGAAATTAGACCCGAACGTCAAC
TGCTGCAACGAAGAAGGCCATGCTACCCCCTCAATGGGCTGGTTGAACAC
CAACCTGAACGTCAACTGCTGCAACGAAGAAGGCCAAGCTACCCCCTCAA
TGGGCTGGTTGAAATTAGACCCGAACGACAACTGCTGCAACGAAGAAGGC
CATGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig34143:18..1223-

>mRNA_H-paniculata_contig34143.9119.1 ID=mRNA_H-paniculata_contig34143.9119.1|Name=mRNA_H-paniculata_contig34143.9119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig34143:18..1223- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTGGTTGAAATTCTCCCCGAACGACAACTGCTGCAACGAAGAAGG
CCATGCTACCCCCTCAATGGGCTGGTTGAAATTCTCCCCGAACGACAACT
GCTGCAACGAAGAAGGCCAAGCTACCCCCTCAATGGGCTGGTTGAAATTC
TACCCGAACGACAACTGCTGCAACGAAGAAGGCCATGCTACCCCCTCAAT
AGACTGGCTGAAATTCTCCCCGAACGACAACTGCTGCAACGAAGAAGGCC
ATGCTACCCCCTCAATAGACTGGTTGAAATTCTCCCCGAACGACAACTGC
TGCAACGAAGAAGGCCATGCTACCCCCTCAATAGACTGGTTGAAGTTCCG
CACGAACGTCAACCGCTGCAACGAAGAAGGCCAAGCTACCCCCTCAATGG
GCTGGTTGAAATTAGACCCGAACGTCAACTGCTGCAACGAAGAAGATGGG
CTGGTTGAAATTCTCCCCGAACGACAACTGCTGCAACGAAGAAGGCCATG
CTACCCCCTCAATGGGCTGGTTGAAATTCTCCCCGAACGACAACTGCTGC
AACGAAGAAGGCCAAGCTACCCCCTCAATGGGCTGGTTGAAATTCTACCC
GAACGACAACTGCTGCAACGAAGAAGGCCATGCTACCCCCTCAATAGACT
GGCTGAAATTCTCCCCGAACGACAACTGCTGCAACGAAGAAGGCCATGCT
ACCCCCTCAATAGACTGGTTGAAATTCTCCCCGAACGACAACTGCTGCAA
CGAAGAAGGCCATGCTACCCCCTCAATAGACTGGTTGAAGTTCCGCACGA
ACGTCAACCGCTGCAACGAAGAAGGCCAAGCTACCCCCTCAATGGGCTGG
TTGAAATTAGACCCGAACGTCAACTGCTGCAACGAAGAAGGCCAAGCTAC
CCCCTCAATGGGCTGGTTGAAATTAGACCCGAACGTCAACTGCTGCAACG
AAGAAGGCCATGCTACCCCCTCAATGGGCTGGTTGAACACCAACCTGAAC
GTCAACTGCTGCAACGAAGAAGGCCAAGCTACCCCCTCAATGGGCTGGTT
GAAATTAGACCCGAACGACAACTGCTGCAACGAAGAAGGCCATGCTGCCA
AGCTACCCCCTCAATGGGCTGGTTGAAATTAGACCCGAACGTCAACTGCT
GCAACGAAGAAGGCCATGCTACCCCCTCAATGGGCTGGTTGAACACCAAC
CTGAACGTCAACTGCTGCAACGAAGAAGGCCAAGCTACCCCCTCAATGGG
CTGGTTGAAATTAGACCCGAACGACAACTGCTGCAACGAAGAAGGCCATG
CT
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