mRNA_H-paniculata_contig34142.9118.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34142.9118.1
Unique NamemRNA_H-paniculata_contig34142.9118.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.020e-22
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
            YAD+DFAT    RR +SGG V  GGGA+SW  RT++     TT+AE +AL ++V E+LFLRQ +  ++           EDNQ A ++  N  S+  ++H+DV+H +VR+ VE  ++ + +V
Sbjct:  278 YADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHV 399          
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A443QZM7_9ACAR (RxLR effector candidate protein-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443QZM7_9ACAR)

HSP 1 Score: 92.0 bits (227), Expect = 8.230e-21
Identity = 53/122 (43.44%), Postives = 70/122 (57.38%), Query Frame = 1
Query:    1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPII--------IQEDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYVGT 342
            + D+D+A   DSRR  SG   ++ GGAISW  R + + A  TT+AE IALAE   E  +LRQ    +        I  DNQ A K+V N    +RT+HIDV+H  +RDA   GK+ + YV T
Sbjct:   31 FCDADYAGDLDSRRSTSGYVFIMSGGAISWMSRVQRIVALSTTEAEYIALAEAAKEAFWLRQLLVDLSLKQAATRILCDNQGAIKLVGNPEFHQRTKHIDVRHNFIRDAQSDGKITVQYVDT 152          
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.610e-20
Identity = 46/124 (37.10%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYVGT 342
            + D+D+A+    RR +SGG V+ GGG ++W  RT++     TT+AE +A+A+++ EVLFLRQ +  ++           EDNQ A ++++N  ++  ++HIDV+H  +R+ VE  ++ IT+V T
Sbjct:  225 FVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPT 348          
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.520e-20
Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYVGT 342
            + D+D+A+    RR +SGG V+ GGG ++W  RT++     TT+AE +A+A+++ EVLFLRQ +  ++           EDNQ A ++ +N  ++  ++HIDV+H  +R+ VE  ++ IT+V T
Sbjct:  287 FVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPT 410          
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.550e-20
Identity = 46/124 (37.10%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYVGT 342
            + D+D+A+    RR +SGG V+ GGG ++W  RT++     TT+AE +A+A+++ EVLFLRQ +  ++           EDNQ A ++ +N  ++  ++HIDV+H  +R+ VE  ++ IT V T
Sbjct:  170 FVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPT 293          
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 5.770e-20
Identity = 43/122 (35.25%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
            + D+D+A+    RR +SGG V+ GGG ++W  RT++     TT+AE +A+A+++ EVLFLRQ +  ++           EDN    ++ +N  ++  ++HIDV+H  +R+ VE  ++ IT+V
Sbjct:   18 FVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV 139          
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5K3H6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.030e-19
Identity = 47/123 (38.21%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ-----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
            + D+D+A+    RR +SGG V+ GGG ++W  RT++     TT+AE +A+A+++ EVLFLRQ + I++            EDNQ A ++ +N  S+  ++HIDV+H  +R  VE  ++ IT+V
Sbjct:  823 FVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRIMLPDAGRYAVHPVFEDNQGAIQIAHNPISNSNSKHIDVRHYFIRKLVERKEISITHV 945          
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.950e-19
Identity = 45/122 (36.89%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
            + D+D+A+    RR +SGG V+ GGG ++W  RT++     TT+AE +A+A+++ EVLFLRQ +  ++           EDNQ A ++ +N  ++  ++HIDV+H  +R+ VE  ++ IT+V
Sbjct: 1321 FVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV 1442          
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.570e-19
Identity = 45/122 (36.89%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
            + D+D+A+    RR +SGG V+ GGG ++W  RT++     TT++E +A+A+++ EVLFLRQ +  ++           EDNQ A ++ YN  ++  ++HIDV+H  +R+ VE  ++ IT+V
Sbjct:  677 FVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHV 798          
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5KJH0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH0_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.580e-19
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
            YAD+DFA+    RR +SGG V  GGGA SW  RT++     TT+AE++AL ++V E+LFL Q +  ++           EDNQ A ++  N  S+  ++HIDV+H  +R+ VE  ++ + +V
Sbjct:  708 YADADFASKAADRRSVSGGIVTCGGGAASWFSRTQKCVTLSTTEAEDVALGDVVKEILFLGQIWRFMLPQVGMPCVPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHV 829          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8D6_9PHAE5.020e-2240.98Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A443QZM7_9ACAR8.230e-2143.44RxLR effector candidate protein-like protein (Frag... [more]
A0A6H5L4G9_9PHAE1.610e-2037.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE3.520e-2037.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE4.550e-2037.10Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE5.770e-2035.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3H6_9PHAE1.030e-1938.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE1.950e-1936.89Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KQN5_9PHAE2.570e-1936.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH0_9PHAE2.580e-1939.34Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34142contigH-paniculata_contig34142:325..705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog42099.EPrPV00000023519
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs1MIKP@121069,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons2
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.618147-CDS-H-paniculata_contig34142:324..5101622930053.618147-CDS-H-paniculata_contig34142:324..510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34142 325..510 +
1691481127.6816647-CDS-H-paniculata_contig34142:324..5101691481127.6816647-CDS-H-paniculata_contig34142:324..510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34142 325..510 +
1622930053.629589-CDS-H-paniculata_contig34142:540..7051622930053.629589-CDS-H-paniculata_contig34142:540..705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34142 541..705 +
1691481127.6932688-CDS-H-paniculata_contig34142:540..7051691481127.6932688-CDS-H-paniculata_contig34142:540..705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34142 541..705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34142.9118.1prot_H-paniculata_contig34142.9118.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34142 325..705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34142.9118.1

>prot_H-paniculata_contig34142.9118.1 ID=prot_H-paniculata_contig34142.9118.1|Name=mRNA_H-paniculata_contig34142.9118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIAL
AEMVNEVLFLRQHYPIIIQEDNQVAEKMVYNKHSSRRTRHIDVKHQIVRD
AVEAGKVDITYVGTGE*
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mRNA from alignment at H-paniculata_contig34142:325..705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34142.9118.1 ID=mRNA_H-paniculata_contig34142.9118.1|Name=mRNA_H-paniculata_contig34142.9118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at H-paniculata_contig34142:325..705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGCTGACTCAGACTTCGCAACGTGCCAGGACAGCCGACGCTTGATCTC CGGCGGAGCGGTACTGCTGGGGGGGGGGGCGATCAGTTGGCACGAGAGAA CTGAGGAGGTGACAGCGGCGGGGACAACAAAAGCCGAAAACATCGCATTG GCGGAGATGGTGAACGAAGTACTGTTTCTGCGCCAAGTGCAGGCGTTCAT AATGCCAACGCTGGAGCACTACCCCATAATAATTCAGGAAGATAATCAAG TGGCCGAAAAGATGGTCTACAACAAGCACAGCAGTCGGAGGACGCGTCAC ATCGACGTGAAGCACCAGATTGTTCGAGATGCGGTTGAGGCTGGGAAGGT TGACATAACCTATGTGGGGACGGGAGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig34142:325..705+

>mRNA_H-paniculata_contig34142.9118.1 ID=mRNA_H-paniculata_contig34142.9118.1|Name=mRNA_H-paniculata_contig34142.9118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig34142:325..705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGCTGACTCAGACTTCGCAACGTGCCAGGACAGCCGACGCTTGATCTC
CGGCGGAGCGGTACTGCTGGGGGGGGGGGCGATCAGTTGGCACGAGAGAA
CTGAGGAGGTGACAGCGGCGGGGACAACAAAAGCCGAAAACATCGCATTG
GCGGAGATGGTGAACGAAGTACTGTTTCTGCGCCAATACGCTGACTCAGA
CTTCGCAACGTGCCAGGACAGCCGACGCTTGATCTCCGGCGGAGCGGTAC
TGCTGGGGGGGGGGGCGATCAGTTGGCACGAGAGAACTGAGGAGGTGACA
GCGGCGGGGACAACAAAAGCCGAAAACATCGCATTGGCGGAGATGGTGAA
CGAAGTACTGTTTCTGCGCCAACACTACCCCATAATAATTCAGGAAGATA
ATCAAGTGGCCGAAAAGATGGTCTACAACAAGCACAGCAGTCGGAGGACG
CGTCACATCGACGTGAAGCACCAGATTGTTCGAGATGCGGTTGAGGCTGG
GAAGGTTGACATAACCTATGTGGGGACGGGAGAGTAGCACTACCCCATAA
TAATTCAGGAAGATAATCAAGTGGCCGAAAAGATGGTCTACAACAAGCAC
AGCAGTCGGAGGACGCGTCACATCGACGTGAAGCACCAGATTGTTCGAGA
TGCGGTTGAGGCTGGGAAGGTTGACATAACCTATGTGGGGACGGGAGAGT
AG
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