mRNA_H-paniculata_contig34142.9118.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 5.020e-22 Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 1
Query: 1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
YAD+DFAT RR +SGG V GGGA+SW RT++ TT+AE +AL ++V E+LFLRQ + ++ EDNQ A ++ N S+ ++H+DV+H +VR+ VE ++ + +V
Sbjct: 278 YADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHV 399
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A443QZM7_9ACAR (RxLR effector candidate protein-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443QZM7_9ACAR) HSP 1 Score: 92.0 bits (227), Expect = 8.230e-21 Identity = 53/122 (43.44%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPII--------IQEDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYVGT 342
+ D+D+A DSRR SG ++ GGAISW R + + A TT+AE IALAE E +LRQ + I DNQ A K+V N +RT+HIDV+H +RDA GK+ + YV T
Sbjct: 31 FCDADYAGDLDSRRSTSGYVFIMSGGAISWMSRVQRIVALSTTEAEYIALAEAAKEAFWLRQLLVDLSLKQAATRILCDNQGAIKLVGNPEFHQRTKHIDVRHNFIRDAQSDGKITVQYVDT 152
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.610e-20 Identity = 46/124 (37.10%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYVGT 342
+ D+D+A+ RR +SGG V+ GGG ++W RT++ TT+AE +A+A+++ EVLFLRQ + ++ EDNQ A ++++N ++ ++HIDV+H +R+ VE ++ IT+V T
Sbjct: 225 FVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPT 348
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 3.520e-20 Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYVGT 342
+ D+D+A+ RR +SGG V+ GGG ++W RT++ TT+AE +A+A+++ EVLFLRQ + ++ EDNQ A ++ +N ++ ++HIDV+H +R+ VE ++ IT+V T
Sbjct: 287 FVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPT 410
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 4.550e-20 Identity = 46/124 (37.10%), Postives = 77/124 (62.10%), Query Frame = 1
Query: 1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYVGT 342
+ D+D+A+ RR +SGG V+ GGG ++W RT++ TT+AE +A+A+++ EVLFLRQ + ++ EDNQ A ++ +N ++ ++HIDV+H +R+ VE ++ IT V T
Sbjct: 170 FVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPT 293
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 5.770e-20 Identity = 43/122 (35.25%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
+ D+D+A+ RR +SGG V+ GGG ++W RT++ TT+AE +A+A+++ EVLFLRQ + ++ EDN ++ +N ++ ++HIDV+H +R+ VE ++ IT+V
Sbjct: 18 FVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV 139
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5K3H6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H6_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.030e-19 Identity = 47/123 (38.21%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ-----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
+ D+D+A+ RR +SGG V+ GGG ++W RT++ TT+AE +A+A+++ EVLFLRQ + I++ EDNQ A ++ +N S+ ++HIDV+H +R VE ++ IT+V
Sbjct: 823 FVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRIMLPDAGRYAVHPVFEDNQGAIQIAHNPISNSNSKHIDVRHYFIRKLVERKEISITHV 945
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.950e-19 Identity = 45/122 (36.89%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
+ D+D+A+ RR +SGG V+ GGG ++W RT++ TT+AE +A+A+++ EVLFLRQ + ++ EDNQ A ++ +N ++ ++HIDV+H +R+ VE ++ IT+V
Sbjct: 1321 FVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV 1442
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.570e-19 Identity = 45/122 (36.89%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
+ D+D+A+ RR +SGG V+ GGG ++W RT++ TT++E +A+A+++ EVLFLRQ + ++ EDNQ A ++ YN ++ ++HIDV+H +R+ VE ++ IT+V
Sbjct: 677 FVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHV 798
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Match: A0A6H5KJH0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH0_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.580e-19 Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 1 YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALAEMVNEVLFLRQHYPIIIQ----------EDNQVAEKMVYNKHSSRRTRHIDVKHQIVRDAVEAGKVDITYV 336
YAD+DFA+ RR +SGG V GGGA SW RT++ TT+AE++AL ++V E+LFL Q + ++ EDNQ A ++ N S+ ++HIDV+H +R+ VE ++ + +V
Sbjct: 708 YADADFASKAADRRSVSGGIVTCGGGAASWFSRTQKCVTLSTTEAEDVALGDVVKEILFLGQIWRFMLPQVGMPCVPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHV 829 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34142.9118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34142.9118.1 >prot_H-paniculata_contig34142.9118.1 ID=prot_H-paniculata_contig34142.9118.1|Name=mRNA_H-paniculata_contig34142.9118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp YADSDFATCQDSRRLISGGAVLLGGGAISWHERTEEVTAAGTTKAENIALback to top mRNA from alignment at H-paniculata_contig34142:325..705+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34142.9118.1 ID=mRNA_H-paniculata_contig34142.9118.1|Name=mRNA_H-paniculata_contig34142.9118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at H-paniculata_contig34142:325..705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34142:325..705+ >mRNA_H-paniculata_contig34142.9118.1 ID=mRNA_H-paniculata_contig34142.9118.1|Name=mRNA_H-paniculata_contig34142.9118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig34142:325..705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |