mRNA_H-paniculata_contig34114.9114.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34114.9114.1
Unique NamemRNA_H-paniculata_contig34114.9114.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Match: D8LB23_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB23_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.910e-23
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 TPLRSQEAYRGLIAKVHPDRDPSNESREKFEVFTIAYDVLSDPGKRSTYDQGLAMRRFVDEVKAGNWAKTLGAVANLGAVATTVGV 258
            TP   + AYR +  +VHPD      +R+ FE  T AY+VLSDPGK+STYDQGLAMR FVD+VKAG W   + AVA+LGA AT+VGV
Sbjct:  149 TPTEIKNAYRKIAMRVHPDTKDGINNRDIFESTTAAYEVLSDPGKKSTYDQGLAMRSFVDKVKAGKWGNVMSAVASLGAAATSVGV 234
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BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Match: A0A835ZL26_9STRA (DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL26_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.130e-12
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   22 AYRGLIAKVHPDR-----DPSNESREKFEVFTIAYDVLSDPGKRSTYDQGLAMRRFVDEVKAGNWAKTLGAVANLG-AVATTVGV 258
            AYR  + + HPD      D S+ + ++F +   AY VLSDPGKRSTYDQG AM+R V  +  G+W   + AV  +G AVA  + V
Sbjct:   20 AYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAMKRMVAWLDKGDWGSAMAAVGKVGRAVAVDIAV 104
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BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Match: A0A7J9XCW6_9ACTN (Chaperone protein DnaJ n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A7J9XCW6_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 3.540e-9
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   16 QEAYRGLIAKVHPDRDPSNESREKFEVFTIAYDVLSDPGKRSTYDQG 156
            ++AYR L   +HPDR+P  E++E+F+  T+AY+VLSDP KR TYD G
Sbjct:   21 KKAYRRLARDLHPDRNPDQETQERFKEITVAYEVLSDPQKRRTYDMG 67
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BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Match: A0A7C4UFT8_9BACT (Chaperone protein DnaJ n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C4UFT8_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.680e-8
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   16 QEAYRGLIAKVHPDRDPSN-ESREKFEVFTIAYDVLSDPGKRSTYDQ 153
            ++AYR L  K HPDR+P N E+ EKF+  T AY+VLSDP KR TYDQ
Sbjct:   23 KKAYRDLALKYHPDRNPGNKEAEEKFKEITEAYEVLSDPEKRKTYDQ 69
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BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Match: A0A0Q8DB47_9ACTN (Chaperone protein DnaJ n=3 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q8DB47_9ACTN)

HSP 1 Score: 60.8 bits (146), Expect = 1.720e-8
Identity = 26/47 (55.32%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   16 QEAYRGLIAKVHPDRDPSNESREKFEVFTIAYDVLSDPGKRSTYDQG 156
            ++AYR L  ++HPD +P  ES+E+F++ T AY+VLSDP KR+TYD+G
Sbjct:   21 KKAYRRLARQLHPDVNPDPESQEQFKLVTAAYEVLSDPQKRATYDRG 67
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BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Match: A0A7C3V3N6_9FIRM (Chaperone protein DnaJ n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C3V3N6_9FIRM)

HSP 1 Score: 60.5 bits (145), Expect = 2.320e-8
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   16 QEAYRGLIAKVHPDRDPSN-ESREKFEVFTIAYDVLSDPGKRSTYDQ 153
            ++AYR L  K HPDR+P N E+ EKF+  T AY+VLSDP KR TYDQ
Sbjct:   23 KKAYRDLALKYHPDRNPGNKEAEEKFKEITEAYEVLSDPEKRRTYDQ 69
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BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Match: A0A0B2B687_9ACTN (Chaperone protein DnaJ n=1 Tax=Mumia flava TaxID=1348852 RepID=A0A0B2B687_9ACTN)

HSP 1 Score: 60.5 bits (145), Expect = 2.330e-8
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 TPLRSQEAYRGLIAKVHPDRDPSNESREKFEVFTIAYDVLSDPGKRSTYDQG 156
            TP   ++AYR L   +HPD +P  +++E+F+  T+AY+VLSDP KRS YD+G
Sbjct:   16 TPEEIKKAYRKLARSLHPDVNPDPDAQERFKSVTVAYEVLSDPEKRSLYDRG 67
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BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Match: UPI001C089B53 (DnaJ domain-containing protein n=1 Tax=Colwellia sp. D2M02 TaxID=2841562 RepID=UPI001C089B53)

HSP 1 Score: 56.6 bits (135), Expect = 2.790e-8
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 TPLRSQEAYRGLIAKVHPDRDPSNESREKFEVFTIAYDVLSDPGKRSTY 147
            T +  ++AYR L  K HPDR+ S E++EKF++   AYDV+SDP KRS Y
Sbjct:   14 TTVEIKKAYRKLANKYHPDRNDSVEAKEKFQLIQKAYDVISDPKKRSLY 62
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BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Match: A0A0G0EX90_9BACT (Chaperone protein DnaJ (Fragment) n=1 Tax=Candidatus Levybacteria bacterium GW2011_GWB1_35_5 TaxID=1618461 RepID=A0A0G0EX90_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 2.990e-8
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   16 QEAYRGLIAKVHPDRDPSNESREKFEVFTIAYDVLSDPGKRSTYDQ 153
            ++AYR L  + HPDR+   ES EKF+  T AY+VLSD GKR TYDQ
Sbjct:   21 KKAYRKLALQYHPDRNKGKESEEKFKEVTKAYEVLSDSGKRQTYDQ 66
[Close]
BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Match: A0A853DHC8_9MICO (Chaperone protein DnaJ n=7 Tax=Allobranchiibius TaxID=2040262 RepID=A0A853DHC8_9MICO)

HSP 1 Score: 60.1 bits (144), Expect = 3.160e-8
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 TPLRSQEAYRGLIAKVHPDRDPSNESREKFEVFTIAYDVLSDPGKRSTYDQG 156
            +P   + AYR L  K+HPD +P +E+ E+F+  + AYDVLSDP K+S+YD G
Sbjct:   15 SPEEIKRAYRRLARKLHPDVNPGDEASEEFKAVSQAYDVLSDPAKKSSYDMG 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34114.9114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB23_ECTSI1.910e-2359.30Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A835ZL26_9STRA2.130e-1244.71DnaJ domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7J9XCW6_9ACTN3.540e-955.32Chaperone protein DnaJ n=1 Tax=Streptosporangiales... [more]
A0A7C4UFT8_9BACT1.680e-861.70Chaperone protein DnaJ n=1 Tax=bacterium TaxID=186... [more]
A0A0Q8DB47_9ACTN1.720e-855.32Chaperone protein DnaJ n=3 Tax=unclassified Nocard... [more]
A0A7C3V3N6_9FIRM2.320e-861.70Chaperone protein DnaJ n=1 Tax=Firmicutes bacteriu... [more]
A0A0B2B687_9ACTN2.330e-850.00Chaperone protein DnaJ n=1 Tax=Mumia flava TaxID=1... [more]
UPI001C089B532.790e-853.06DnaJ domain-containing protein n=1 Tax=Colwellia s... [more]
A0A0G0EX90_9BACT2.990e-858.70Chaperone protein DnaJ (Fragment) n=1 Tax=Candidat... [more]
A0A853DHC8_9MICO3.160e-850.00Chaperone protein DnaJ n=7 Tax=Allobranchiibius Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34114contigH-paniculata_contig34114:948..2220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue6.2e-20
Seed eggNOG ortholog2880.D8LB23
KEGG koko:K09537
Hectar predicted targeting categoryother localisation
EggNOG free text desc.toxin transport
EggNOG OGsCOG2214@1,KOG0691@2759
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-27_005510.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.412489-CDS-H-paniculata_contig34114:947..11001622930053.412489-CDS-H-paniculata_contig34114:947..1100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34114 948..1100 +
1691481127.617222-CDS-H-paniculata_contig34114:947..11001691481127.617222-CDS-H-paniculata_contig34114:947..1100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34114 948..1100 +
1622930053.4282112-CDS-H-paniculata_contig34114:2034..22201622930053.4282112-CDS-H-paniculata_contig34114:2034..2220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34114 2035..2220 +
1691481127.62886-CDS-H-paniculata_contig34114:2034..22201691481127.62886-CDS-H-paniculata_contig34114:2034..2220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34114 2035..2220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34114.9114.1prot_H-paniculata_contig34114.9114.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34114 948..2220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34114.9114.1

>prot_H-paniculata_contig34114.9114.1 ID=prot_H-paniculata_contig34114.9114.1|Name=mRNA_H-paniculata_contig34114.9114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
TPLRSQEAYRGLIAKVHPDRDPSNESREKFEVFTIAYDVLSDPGKRSTYD
QGLAMRRFVDEVKAGNWAKTLGAVANLGAVATTVGVSVGVAAAQPLAKDL
AQGLVDVATGGLQ
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mRNA from alignment at H-paniculata_contig34114:948..2220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34114.9114.1 ID=mRNA_H-paniculata_contig34114.9114.1|Name=mRNA_H-paniculata_contig34114.9114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1273bp|location=Sequence derived from alignment at H-paniculata_contig34114:948..2220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCCCCTTCGTTCGCAGGAGGCATACCGAGGGCTTATTGCGAAAGTGCA
CCCGGACAGGGATCCGAGCAATGAATCAAGGGAAAAATTTGAGGTATTCA
CGATTGCGTACGACGTGCTATCGGATCCTGGAAAACGCTCGACGTACGAT
CAGGTGAGGTCGGGCTTTGCTCGCTTGCCGCGCCGTGTTCTGCCCTGCCC
TGCCCTGCGGCAGGGGGAGGGGGGGGTAATGACTTTTGATTGGTCTTCGT
TTGGTGTATGGTACTCGAGAATGATGTCCAACATGCCGAGGTATGTACTT
GGTAGTGGGAAGCAGTAGTTACGAGAGAGCAAGTAGTTCACTTGATGCAA
GAGCAAGAGCTCTATACACCAAACTGCAATATTAGCAACAACACCATGCC
CGCGAATTGCCGGGGGCAGCTTGGGGGCAGCTTCACCAGCAGGACAAACA
AACGAACAGCCAACATGTACACCATGGAAAAAGGCAGAAGAGTAAAGAGT
CAAGCGTGTAGGAATGCAACTTGGAAAGTAGGACGTGAAACCGCCGGAAT
AAAATGGAGTTGTGTCCAGTACTTTCAATGCGGTTGGATTAGTTACGCAC
AAGTTGACCGAACTAGGCGAGAAAGGGGGGCAAGAAATCAATCATGACCA
GATATAGTCATCACTCATGAGCAAAATGAAAATGACTGGAGGGCTATAGA
AGGCCTTGCTGCTTTTTGTTCTCAAATTACGTCGTAATGTTGCAGCTATG
TATGCCCTGTTGATCATTCGAGAGCTACGTAGTTGCGTCATTTTCCATGT
TGGGCTCACTTCAGTGCTGTATGGTATGATATGTAAAGGCTGAAATTTGC
TGCAAGTAAGCAAGCATAGATGGATTCCTCCACCTCGATATACCTCGCCG
TCCTTGTCCAACTGAACACCCTCCAATATTGGTGGTGGTCGTAGTATGCC
TCTTCGTCTTATTGTCATTATCTTCATACATATGTATCGTACCCTGTGAC
ATTTTTTCAGTTTTTGGCAACAACGTTGCACACCCCCCCCACCACAATCC
CCTCTCTACCCCCCTTTCCCTCTGTCTCTCTTGCCAGGGTTTGGCAATGC
GCCGCTTTGTGGACGAGGTCAAAGCCGGGAACTGGGCGAAGACTCTGGGG
GCGGTGGCAAATCTGGGTGCAGTAGCGACGACTGTGGGGGTCTCCGTCGG
AGTAGCTGCTGCGCAACCATTGGCGAAAGACCTGGCGCAAGGCTTGGTCG
ACGTGGCCACTGGAGGGTTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig34114:948..2220+

>mRNA_H-paniculata_contig34114.9114.1 ID=mRNA_H-paniculata_contig34114.9114.1|Name=mRNA_H-paniculata_contig34114.9114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig34114:948..2220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCCCCTTCGTTCGCAGGAGGCATACCGAGGGCTTATTGCGAAAGTGCA
CCCGGACAGGGATCCGAGCAATGAATCAAGGGAAAAATTTGAGGTATTCA
CGATTGCGTACGACGTGCTATCGGATCCTGGAAAACGCTCGACGTACGAT
CAGACCCCCCTTCGTTCGCAGGAGGCATACCGAGGGCTTATTGCGAAAGT
GCACCCGGACAGGGATCCGAGCAATGAATCAAGGGAAAAATTTGAGGTAT
TCACGATTGCGTACGACGTGCTATCGGATCCTGGAAAACGCTCGACGTAC
GATCAGGGTTTGGCAATGCGCCGCTTTGTGGACGAGGTCAAAGCCGGGAA
CTGGGCGAAGACTCTGGGGGCGGTGGCAAATCTGGGTGCAGTAGCGACGA
CTGTGGGGGTCTCCGTCGGAGTAGCTGCTGCGCAACCATTGGCGAAAGAC
CTGGCGCAAGGCTTGGTCGACGTGGCCACTGGAGGGTTGCAGGGTTTGGC
AATGCGCCGCTTTGTGGACGAGGTCAAAGCCGGGAACTGGGCGAAGACTC
TGGGGGCGGTGGCAAATCTGGGTGCAGTAGCGACGACTGTGGGGGTCTCC
GTCGGAGTAGCTGCTGCGCAACCATTGGCGAAAGACCTGGCGCAAGGCTT
GGTCGACGTGGCCACTGGAGGGTTGCAG
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