mRNA_H-paniculata_contig3409.9109.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3409.9109.1
Unique NamemRNA_H-paniculata_contig3409.9109.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Match: D7G3T8_ECTSI (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T8_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 1.350e-127
Identity = 186/228 (81.58%), Postives = 207/228 (90.79%), Query Frame = 2 
Query:  329 AVGSILREVESLRKSSAFPELDSFGVIDQKHDTYLGPTMESNWVLPGKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWRSGEALRPYFQDVLQLLRKLRELKAADPRAVPAISAPDATDFVHFPIVDCNVADDTKVLQLAARLAARVARGEVLYLHCWGGHGRTGTVVSIMLNLMYDLSAEEAMERCQHVHDVRRIPINVGSPQTEAQREQ 1012
            AV  +L EVE+LR++S+FP L++   ID K   YLGPTMESNWVLPG+LLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEY+A GVTE MWRSG+ALRPYFQDV+QLL KL EL+ ADPR+VPAI AP+ TDFVHFPIVDCNVADDTKVLQLAA+LA R+ARGEV+YLHCWGGHGRTGTVV IML+LMY LSA+EAMERCQHVHDVRRIPI+VGSPQTEAQR+Q
Sbjct:   43 AVELLLAEVEALRRASSFPGLEALSSID-KAGRYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYQAEGVTEEMWRSGDALRPYFQDVVQLLAKLGELRRADPRSVPAICAPEETDFVHFPIVDCNVADDTKVLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLSADEAMERCQHVHDVRRIPISVGSPQTEAQRQQ 269
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BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Match: A0A6H5L4A3_9PHAE (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A3_9PHAE)

HSP 1 Score: 385 bits (990), Expect = 5.840e-126
Identity = 190/236 (80.51%), Postives = 213/236 (90.25%), Query Frame = 2 
Query:  329 AVGSILREVESLRKSSAFPELDSFGVIDQKHDTYLGPTMESNWVLPGKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWRSGEALRPYFQDVLQLLRKLRELKAADPRAVPAISAPDATDFVHFPIVDCNVADDTKVLQLAARLAARVARGEVLYLHCWGGHGRTGTVVSIMLNLMYDLSAEEAMERCQHVHDVRRIPINVGSPQTEAQREQVRRVVCRL 1036
            AV  +L EVE+LR++S+FP L++   ID K   YLGPTMESNWVLPG+LLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRA GVTE MWRSG+ALRPYFQDV+QLL KL EL+ ADPR+VPAI AP+ TDFVHFPIVDCNVADDTKVLQLAA+LA R+ARGEV+YLHCWGGHGRTGTVV IML+LMY L A+EAMERCQHVHDVRRIPI+VGSPQTE+QR+QVRRV+ R+
Sbjct:   43 AVELLLAEVEALRRASSFPGLEALSSID-KAGRYLGPTMESNWVLPGRLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAEGVTEEMWRSGDALRPYFQDVVQLLAKLGELRRADPRSVPAICAPEETDFVHFPIVDCNVADDTKVLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGRV 277
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BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Match: A0A7S3YH03_HETAK (Protein-tyrosine-phosphatase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YH03_HETAK)

HSP 1 Score: 240 bits (613), Expect = 9.290e-74
Identity = 124/229 (54.15%), Postives = 163/229 (71.18%), Query Frame = 2 
Query:  365 RKS-SAFPELDSFGVIDQKHDTYLGPTMESNWVLPGKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWRSGEALRPYFQDVLQLLRKLRELKAADPRAVPAISAPDATDFVHFPIVDCNVADDTKVLQLAARLAARVARGEVLYLHCWGGHGRTGTVVSIMLNLMYDLSAEEAMERCQHVHDVRRIPINVGSPQTEAQREQVRRVVCRLERRS 1048
            RKS S+FP L+    I +  + Y+GPT ESNWV+PG LLVGAYP SM+D     +L  IL+  V+TFVCLQQEY   GVTE MWRSGE LRPYF+D +    +L  L AA            +   +HFPI DC  ADD ++  LA  L + +A+GEV+YLHCWGGHGRTGTV+ ++L+LMY+ +A++A ERCQ++HD+RRIP+ VGSPQT+ QREQVRRV+ +L+R++
Sbjct:   17 RKSFSSFPTLEDLRDIAKHPEDYVGPTDESNWVIPGLLLVGAYPCSMDDVETWEILRGILVLKVTTFVCLQQEYVHEGVTEQMWRSGEYLRPYFKDAVGFAPRLG-LDAA------------SLSLLHFPIEDCGTADDDRLAALAHHLVSLLAKGEVMYLHCWGGHGRTGTVICLLLHLMYNYTADQAFERCQYLHDLRRIPVAVGSPQTQGQREQVRRVIEKLKRQA 232
[Close]
BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Match: A0A813AT18_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AT18_9DINO)

HSP 1 Score: 218 bits (556), Expect = 1.270e-64
Identity = 120/231 (51.95%), Postives = 148/231 (64.07%), Query Frame = 2 
Query:  353 VESLRKSSAFPELDSFGVIDQKHDTYLGPTMESNWVLPGKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWRSGEALRPYFQDVLQLLRKLRELKAADPRAVPAISAPDATDFVHFPIVDCNVADDTKVLQLAARLAARVARGEVLYLHCWGGHGRTGTVVSIMLNLMYDLSAEEAMERCQHVHDVRRIPINVGSPQTEAQREQVRRVVCRLERR 1045
            V+ L   +  P L++   ID   D+Y+GPT ESNWV+P ++LVGAYP +  D  ++ +L +IL  GV+TFVCLQ EY+ HGVTE  WRSGE LRPY  D LQLL    E   AD    P    PD+ DFVH PIVDC    D KVL LA  L  R+  GE LY+HCWGGHGRTGTVVS+ML +MY L    AM   Q  HD+R  P  V SPQT  QR+QV R++ ++ +R
Sbjct:   38 VKPLADYADVPPLEAPVSIDP--DSYIGPTEESNWVIPSRMLVGAYPGATEDELNSEILTSILELGVTTFVCLQSEYQHHGVTEEQWRSGEKLRPYIFDALQLL----ETCPAD--YFPEGRKPDSLDFVHLPIVDCATVSDGKVLSLAYDLCRRLKAGENLYVHCWGGHGRTGTVVSLMLGIMYGLPPMAAMAWVQMFHDMRIAPCGVPSPQTAEQRKQVTRILVKVGKR 260
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BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Match: A0A5A8C9N1_CAFRO (TYR_PHOSPHATASE_2 domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C9N1_CAFRO)

HSP 1 Score: 211 bits (537), Expect = 4.130e-62
Identity = 111/219 (50.68%), Postives = 143/219 (65.30%), Query Frame = 2 
Query:  371 SSAFPELDSFGVIDQKHDTYLGPTMESNWVLPGKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWRSGEALRPYFQDVLQLLRKLRELKAADPRAVPAISAPDATDFVHFPIVDCNVADDTKVLQLAARLAARVARGEVLYLHCWGGHGRTGTVVSIMLNLMYDLSAEEAMERCQHVHDVRRIPINVGSPQTEAQREQVRRVV 1027
            + A P L    ++D  +  Y GPT ESNWVL G+LLVGAYP +++D  +  +L +IL  G++TFVCLQ EY+  GV+   W +G  LRPY  D ++LL  +R      P    A    +   F+HFPIVDC+ A+DT VL+LA  L  R+A GE LY+HCWGGHGRTGTVVSIML LMY L A   M   QHVHD+R  P++VG+PQT  QR QV R++
Sbjct:   34 AGAVPPLPFSDLVDPTY--YRGPTEESNWVLHGRLLVGAYPGAVDDGQNDAILRSILELGITTFVCLQSEYQHRGVSREDWIAGTKLRPYIYDAVRLLPSIRW---PSPSQCCAPKPTEGLHFLHFPIVDCSTANDTGVLELAHDLVNRLASGENLYVHCWGGHGRTGTVVSIMLGLMYGLPARNCMAYLQHVHDLRICPMDVGTPQTSQQRRQVIRIL 247
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BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Match: A0A7S2WTD1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WTD1_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.430e-56
Identity = 103/214 (48.13%), Postives = 136/214 (63.55%), Query Frame = 2 
Query:  386 ELDSFGVIDQKHDTYLGPTMESNWVLPGKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWRSGEALRPYFQDVLQLLRKLRELKAADPRAVPAISAPDATDFVHFPIVDCNVADDTKVLQLAARLAARVARGEVLYLHCWGGHGRTGTVVSIMLNLMYDLSAEEAMERCQHVHDVRRIPINVGSPQTEAQREQVRRVV 1027
            +L SF  I+Q    Y+GPT ESNWVLPGKLLVGAYPA ++D  H  LL +IL  GV+TFVCLQ+EY         WR+G  +RPY  D  ++ ++   L       +          F+H PI DC+V  D  VL+LA  L  R+  GEVLY+HCWGGHGRTGT+V+IML ++Y +   EA++R Q  HD+R  P++V SPQT +QR QV R++
Sbjct:   46 KLPSFKEIEQHRGMYVGPTEESNWVLPGKLLVGAYPAEVDDVAHEKLLRSILQCGVTTFVCLQKEYDHSSTDPKEWRAGTKIRPYINDAYRITKQDNTLGTCRSSEL---------SFLHVPIADCDVTSDQVVLRLAQSLCWRLIAGEVLYIHCWGGHGRTGTLVAIMLGMLYGIPKAEALKRTQLYHDLRVCPLHVPSPQTFSQRMQVLRIL 250
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BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Match: A0A8J2T0D3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0D3_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.290e-55
Identity = 103/216 (47.69%), Postives = 139/216 (64.35%), Query Frame = 2 
Query:  383 PELDSFGVIDQKHDTYLGPTMESNWVLPGKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWRSGEALRPYFQDVLQLLRKLRELKAADPRAVPAISAPDATDFVHFPIVDCNVADDTKVLQLAARLAARV-ARGEVLYLHCWGGHGRTGTVVSIMLNLMYDLSAEEAMERCQHVHDVRRIPINVGSPQTEAQREQVRRVV 1027
            P L+SF VI Q+   Y+GPT ESNWVLPG+L+VGA+P   +D  +  LL +IL  G++TFVCLQ+EY      E+ WRSG A+RPY+   + L  +    +  +              F+HF I DC+V +D  V   +  LA R+    EV+YLHCWGGHGR GT+  ++L+ +Y L+A +AM RCQ VHD+RR+PI VGSPQT+ QR+QV RVV
Sbjct:   35 PPLESFQVISQRKQRYVGPTDESNWVLPGRLMVGAFPGVSDDRENDRLLNSILSCGITTFVCLQREYDPDA-PESAWRSGAAIRPYYPSAVALAARHHRGRRLE--------------FIHFGIEDCSVVEDDAVAAFSRSLADRLRCTDEVIYLHCWGGHGRAGTITCLLLHWLYGLNALDAMARCQFVHDLRRVPIVVGSPQTQTQRDQVCRVV 235
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BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Match: A0A7S3NIH7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIH7_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.560e-54
Identity = 101/218 (46.33%), Postives = 136/218 (62.39%), Query Frame = 2 
Query:  383 PELDSFGVIDQKHDTYLGPTMESNWVLPGKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWRSGEALRPYFQDVLQLLRKLRELKAADPRAVPAISAPDATDFVHFPIVDCNVADDTKVLQLAARLAARVA-RGEVLYLHCWGGHGRTGTVVSIMLNLMYDLSAEEAMERCQHVHDVRRIPINVGSPQTEAQREQVRRVVCR 1033
            P L+    I      Y GPT ESNW +PG+L+VGA+P  ++D  +A+LL  IL QG++TFVCLQ+EY      E+ WR G ALRPYF   +++  +L      DP             F+HF I DC+VA+D+ V   A RLA R+    +++YLHCWGGHGR GT+  ++ +L+Y L  + AM RCQ VHD R+IPINVGSPQT  Q +QV R++ R
Sbjct:   79 PPLEPMRKIGANPTRYCGPTDESNWAIPGRLMVGAFPGMIDDVENANLLKNILNQGITTFVCLQREYNPRA-RESDWRKGLALRPYFNSAVEICAEL------DPHR--------DLHFLHFGIQDCSVAEDSAVEAFARRLARRIRDTDQIIYLHCWGGHGRAGTITCLLFHLLYGLDDKTAMRRCQLVHDCRKIPINVGSPQTRTQCDQVSRIIHR 281
[Close]
BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Match: A0A2R5GPB8_9STRA (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPB8_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.050e-50
Identity = 104/221 (47.06%), Postives = 134/221 (60.63%), Query Frame = 2 
Query:  371 SSAFPE-LDSFGVIDQKHDTYLGPTMESNWVLPGKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWRSGEALRPYFQDVLQLLR-KLRELKAADPRAVPAISAPDATDFVHFPIVDCNVADDTKVLQLAARLAARVARGEVLYLHCWGGHGRTGTVVSIMLNLMYDLSAEEAMERCQHVHDVRRIPINVGSPQTEAQREQVRRVV 1027
            SSA P  L     +++    Y GPT ESNWV+PG+L+VGAYPA  +D  H  LL  IL  GV+TFVCLQ EY  +    A       +RPY +D  +L + + RE +   P  V A S      F+H PIVDC V  D  V  LA  L  R+  GEV+YLHCWGGHGRTGT+V++ML ++Y +S  EA++R Q  HD R  P+ V SPQT +QR QV R++
Sbjct:  218 SSALPSRLPEVSAVERDRKAYAGPTDESNWVIPGRLMVGAYPAEADDQSHDALLNAILECGVTTFVCLQAEYNHYAPATA------PIRPYIRDAFRLCQMREREARQKSPNEVCAASK---LGFLHLPIVDCKVTGDEVVRALAEALCWRLVSGEVIYLHCWGGHGRTGTLVAVMLGMLYKISKSEALKRTQLYHDCRSCPLQVQSPQTFSQRMQVLRIL 429
[Close]
BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Match: A0A061SJ53_9CHLO (Map kinase phosphatase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SJ53_9CHLO)

HSP 1 Score: 180 bits (457), Expect = 2.100e-49
Identity = 94/202 (46.53%), Postives = 126/202 (62.38%), Query Frame = 2 
Query:  434 GPTMESNWVLPGKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWRSGEALRPYFQDVLQLLRKLRELKAADPRAVPAISAPDATDFVHFPIVDCNVADDTKVLQLAARLAARVARGEVLYLHCWGGHGRTGTVVSIMLNLMYDLSAEEAMERCQHVHDVRRIPINVGSPQTEAQREQVRRVVCRLE 1039
            GPT  SNWV+ G +LVGAYPA+++D     +L T+L  G+ TFVCLQ E   + V+EA WRSG ALRPY  D  ++L +  +   A    +P        DF+H P+VD +V  D  +++L      R+ RGE LY+HCWGGHGRTGT+V ++L  +Y L +  A+  CQ  HD RR P NV SPQT  QR QV+R++ R E
Sbjct:   23 GPTAWSNWVIKGHVLVGAYPATIDDRETEEILTTLLETGIDTFVCLQAEVSLN-VSEARWRSGYALRPYIHDAQRILSRAHQSGXA---RIPQTRL----DFLHLPVVDGSVTTDEAIMRLRDDCCERILRGERLYIHCWGGHGRTGTLVCLILGKLYGLPSATALHLCQCYHDTRRFPQNVRSPQTPVQRAQVQRILGRSE 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3409.9109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3T8_ECTSI1.350e-12781.58TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A0A6H5L4A3_9PHAE5.840e-12680.51TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A0A7S3YH03_HETAK9.290e-7454.15Protein-tyrosine-phosphatase (Fragment) n=1 Tax=He... [more]
A0A813AT18_9DINO1.270e-6451.95Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A5A8C9N1_CAFRO4.130e-6250.68TYR_PHOSPHATASE_2 domain-containing protein n=5 Ta... [more]
A0A7S2WTD1_9STRA1.430e-5648.13Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8J2T0D3_9STRA2.290e-5547.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NIH7_9STRA2.560e-5446.33Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2R5GPB8_9STRA1.050e-5047.06TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A0A061SJ53_9CHLO2.100e-4946.53Map kinase phosphatase n=1 Tax=Tetraselmis sp. GSL... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3409contigH-paniculata_contig3409:8222..13626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score381.7
Seed ortholog evalue3.9e-103
Seed eggNOG ortholog2880.D7G3T8
Hectar predicted targeting categoryother localisation
EggNOG OGs2BVII@1,2S2A7@2759
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-00_007000.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1304
Cds size1137
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3409.9109.1prot_H-paniculata_contig3409.9109.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3409 8388..13626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.6785378-UTR-H-paniculata_contig3409:8221..83871622930052.6785378-UTR-H-paniculata_contig3409:8221..8387Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3409 8222..8387 +
1691481127.2856233-UTR-H-paniculata_contig3409:8221..83871691481127.2856233-UTR-H-paniculata_contig3409:8221..8387Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3409 8222..8387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.6902397-CDS-H-paniculata_contig3409:8387..83901622930052.6902397-CDS-H-paniculata_contig3409:8387..8390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 8388..8390 +
1691481127.2951603-CDS-H-paniculata_contig3409:8387..83901691481127.2951603-CDS-H-paniculata_contig3409:8387..8390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 8388..8390 +
1622930052.7034044-CDS-H-paniculata_contig3409:9113..93021622930052.7034044-CDS-H-paniculata_contig3409:9113..9302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 9114..9302 +
1691481127.3029363-CDS-H-paniculata_contig3409:9113..93021691481127.3029363-CDS-H-paniculata_contig3409:9113..9302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 9114..9302 +
1622930052.7179801-CDS-H-paniculata_contig3409:11068..112951622930052.7179801-CDS-H-paniculata_contig3409:11068..11295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 11069..11295 +
1691481127.310615-CDS-H-paniculata_contig3409:11068..112951691481127.310615-CDS-H-paniculata_contig3409:11068..11295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 11069..11295 +
1622930052.7338138-CDS-H-paniculata_contig3409:12059..122581622930052.7338138-CDS-H-paniculata_contig3409:12059..12258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 12060..12258 +
1691481127.3183527-CDS-H-paniculata_contig3409:12059..122581691481127.3183527-CDS-H-paniculata_contig3409:12059..12258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 12060..12258 +
1622930052.7480288-CDS-H-paniculata_contig3409:13107..136261622930052.7480288-CDS-H-paniculata_contig3409:13107..13626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 13108..13626 +
1691481127.3285055-CDS-H-paniculata_contig3409:13107..136261691481127.3285055-CDS-H-paniculata_contig3409:13107..13626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 13108..13626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3409.9109.1

>prot_H-paniculata_contig3409.9109.1 ID=prot_H-paniculata_contig3409.9109.1|Name=mRNA_H-paniculata_contig3409.9109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=379bp
MTPMASENSAPARGGSCQNIVARPLVPPTVTPSSVIISEDSLTDTELDDF
HLEEAVGSILREVESLRKSSAFPELDSFGVIDQKHDTYLGPTMESNWVLP
GKLLVGAYPASMNDSHHAHLLCTILLQGVSTFVCLQQEYRAHGVTEAMWR
SGEALRPYFQDVLQLLRKLRELKAADPRAVPAISAPDATDFVHFPIVDCN
VADDTKVLQLAARLAARVARGEVLYLHCWGGHGRTGTVVSIMLNLMYDLS
AEEAMERCQHVHDVRRIPINVGSPQTEAQREQVRRVVCRLERRSARVAAA
AVAAATRAAMHLKQQSSNIGSGENSVFSAIPVDGEKAICRQGAGLGARKT
EIGAAVAGRKQSSAGGGGGALGAGAVAVV
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mRNA from alignment at H-paniculata_contig3409:8222..13626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3409.9109.1 ID=mRNA_H-paniculata_contig3409.9109.1|Name=mRNA_H-paniculata_contig3409.9109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5405bp|location=Sequence derived from alignment at H-paniculata_contig3409:8222..13626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAATCTGATCATCCTACTTCGACCACTCGCGACCTGCGAACCCACAAA
CAGAACGGAGCCGGAGAGCAAAACAAAGCAGCACGGCGCAGCACAGTGCG
GCACAGCAACATAAAACCACAACATAGCATACAGCAGTCTCCTATCCTTC
TGCGACAACGGTGGCTATGGTGAGCTGGCGTCATTGTTGGAGCGGTTAGT
GTTTTTCTTGGTGTGTCGGAGAGGTCTCCCGCCAGTAAGTTGGCTCAAAA
CAGCGAAGGGCTGCAAGTCAAGGGCCCACTGACAAACTACACTGGCGGCT
CTGTCCTGTCTTGGAATATGGGATAGCCAGGGCGGCCATCGCACTTCGTA
CCACTCTTTGGAATACCCTGTAGTCGCCTTTCGGACCATGTTGCTTCAAA
ATAACGATACGGGCGTGCTCGGGCAGAGGTGGATCGCCCGAAATTAATCT
GATCTGCAAGCTGGTGGCCTACCCCCACAGTCCTGAACCCCAGCCGGTAC
CTCAACCAGCATGAGACTGCAGACGTTAAATATATGTCGCCGCGTGAGAT
AGATCTGAAACAGACAGTGTATATAGTACATCCGAAGTTGGGGTCTCACT
CACTTTCGCACTCAGGTGCCTTGCAAAGGCAGCCATCGTGCCGCGGGCGT
CATCTGTCTCTCCCTTCCCTCCGCTGGGTGGCGGTTTCTAGTTCATCTCG
AAAGAAATGTCCTGATTTTTCTTTTTTCGCGCCCGCCCCCAACTCAAATC
TCAACCGTAGTGTTTTTTCTTCCATTAAAATTTGTTTTGTGCTTCAGTAC
CTCCGTCTGTATTACAGGCAACCTAAATAAAATGCAGTGATCGTTTGTGT
TTCGTTCCTCGTTTGTCATTACACTGCCTGTGTGTTTCGCAGACTCCAAT
GGCGTCTGAGAACAGCGCGCCCGCCCGTGGAGGATCCTGTCAAAACATAG
TTGCGAGGCCTCTGGTGCCCCCTACCGTTACTCCGTCTTCCGTCATCATC
TCCGAGGATTCATTGACTGATACGGAGCTGGATGACTTCCACCTGGAAGA
GGCCGTTGGTAGTATATTGCGGGAAGTGGAGGTGTGTGACCGTCATAAAA
TGCTGTATACAGCTATGCATTCACGTAGTAAGATAGTCGGTGCAACGGCT
ACCGACAATAGTTTGATTCATGCTTGATGTAGTTTTCATGATGGAGCGTT
TGCAGGGCTTCGACAACAACATCCAAGCTGCCCTGTTTTATAAATGGTAT
TTCTCAAAAATGCGGCTTTTTCCGCCCTGATCGGAAATTCTTGGCGTTCA
TCACACCAAAGTCCCTCATGTAAAGACAGCGTTGTCATGTCGTCTATCGT
ATGATATGTAATTTTGTATTTCATTCTATAACTGAGTCATAAAAGTTTGG
TGCCCCTACCAGCTATCCGCGTTACACAACGGACCTGCCCCTGTGGAATA
CGCTGCCATGTACTACTTGATTACGGAATATACCGCCCTGACTAGACACG
CCAACCGTACTGTCTTCCATGTCACCCCACAGATCATCCTAAAGAGGCGA
TGGAGCCTCAACACGCCGTAGCGTGGTTTTGTATCCCTCACAGTATATAC
ATAATACCTTTAACGCTTTCATCTAGCCAACGCGACCCCTGTGTGCCTCG
ATTGTTGATGGATGCCTACCAAGGCAAAATACCGGTGATTCATAACGCCC
TGGAAGAGTGGCGCGCCCATGATTTGGCGCAGTTGAACACGAGCGGATGG
CACTGGTGCAGTCATGGGTCAAACTGACTGCACGGTGCATCCCCCATTTA
CTAATTTCACATCAACAACATGAGTGACTTCATACAGTCTACAGCACTAC
TCCATTGCATGTGGTGGCAGTTGTCGAATACTGTCGACCTGTCGATACTG
TCCGTTATGTGCCTAACCTGGTCTTCTGTCCCGCGTTCCATCTGAAATTT
TGTTGCCCACCACGAGTTATAACCATTAATTAAATAGAACATCACGGTTT
TATACCGTTTATTGTTGATGAGAAAATGCAACTTGCAGCACGGTAGTAGT
ACAGGGCATGAAGTATGATGTGATATCGTGCGGTGTATCCTGCAGGCACA
ACCAGGCAACGGTGTGGGCTTGAGGAAGCCGAGCTCGCCCATGAACAGCA
ACGCTTGCTCATACAAGTCAAGATGACAGTAGATCGTAGATACCATATAT
TGAGTCAGCACAACGCAGCGATTTTTGTGGGACTTCGCTGATCGTCGCAT
TGACTGGGTGATAGCCGCTCTATATTGCCGATGTACAATTTATATGTTCG
CCGCCCCGTAGCAGTTGCAATTCATGCCACATCCCCGACGGCATGCTGCT
AGAAACGTTTGCACCTGCGGCCTTAACCTCTTTTGTAGCTTTGTTGTGAA
GACGCAGGAGTCAAGCAGTTGAGCCATTCGTTTTGGCCGAATCTCCTCAA
CGAAACACCAAAACAACACATGCTATTTTTCCCAAACCTAAGAAAGAACC
GGCCTGACAATTACGCAGTTGAAGAGCCAAATTTGAAATTTGCATCCTTT
AGTGTTCCAGACTCCATGGAGCACGACGCGTCCGGCACGATGTTTACTCA
GGGTTATGATGGGGAGGGGGTAAACACAATATATATATATAGGCTTTCCT
GCAACGTTTCAGTCTGTTTCCCCTCAGATCGTGGTCGGGTTGGGCTTCGT
ATGCCCACGTCGGTTTTCCCACCTTCGTTCTTGTGTTCCATGAATTCGCA
CTTCAAACCACGCATATGAATATTTGTCGTCGGAATGGTCGTATAGAGTT
CGAAAACCATTGCTGTACATGCTCCAAACCCCGCTTTCTGTCGACAGAGT
CTCCGCAAGTCCTCCGCCTTCCCTGAACTGGACAGCTTCGGCGTTATAGA
TCAGAAGCATGATACATATCTGGGTCCTACTATGGAGTCCAACTGGGTAC
TGCCGGGGAAACTCCTTGTTGGGGCCTACCCGGCCTCCATGAACGATAGC
CACCACGCGCATCTGCTGTGTACCATCCTCCTCCAGGGCGTGTCGACATT
TGTGTGTCTGCAGCAGGAATACAGGTGAGGCCGAATTGCCTGATGCTTTG
ATCTGTTCGTCTCTCCTAATCAAACTCTTGGAAATATCTTCTCTTCCCCA
ATGAAATTGTATCTTACTAAAGTTAAAATATTTTTGTCTCCCTTTTCCAA
CTATTATATAGTAATATTCTTTTGGTATATCTCAGCGTGTCGCACATCTG
CTCCCCTAAGGTTGATAATTTAGATAGTATGTCCGATGTCGTCTCCTGCT
TGGTCGTACAGCATCTTCCCCGGTTCTAGCTAGTGTCGATTATTGCATGG
ACTCAGAGACTTTTGATTGAGGGAGTGGAGGATCCACAAATCGACCAAAT
TTAAGGCGCGCGGGGAGGGGAGGGGGCAGCATACACAGCGTGGAAGCGAG
GTTCGAAAATTGCGTTTTCTCAACAGTATATTCAAGTAGGAGAAAGCGCG
ACACAGTTAATTACGAGGCGGGACAAAAACCAATCGAAAATTGGAGGTAC
GACAATTAATTTCAATACTGCGGAGTGACTCAGTTCATTGAATTGACCAT
AAGGGGGGTGGAAGTGGGGGCGTGTGTATCGAAACTGTGCCAGTAGTAAC
CAAGGAGCGGGCGGGGTGTGTGAACGACGTTCACGAGATATATTTCGTTC
AACATTGCGATGGTTTCAGCAGTTTTTCATCTTCAACAGTAACCCCTGTT
CGCGTGTATTGTTTCGAGTGGAGTATATAGCTGTCGGTGTCTCGTGTCCC
AATAGGATTTCCCGTACTCTTCCATTTTCGCTGTCCAGGGCACATGGAGT
GACGGAGGCGATGTGGCGGTCAGGCGAGGCGCTGCGGCCATATTTCCAGG
ACGTTTTGCAGTTGCTGCGTAAGCTGCGCGAGTTGAAGGCCGCTGATCCA
CGCGCTGTGCCTGCCATTTCGGCACCGGACGCGACGGACTTCGTGCATTT
TCCAATTGTGGATTGCAATGTGGCCGACGATACCAAGGTGAGTGATGTGG
TTATAGATCAGTTTGCGGACAAAGATATATCGTCCTCTGTACCACTGACA
ACTTTCGTCTTGAATCTTCAATTTTACACGAGATGATCATGACCTTGGAT
TCCCAAAGGGCACGGATTTTTACGAAATATCCATCTCTGTGGGGATCAGG
ACGAACACTTGGAAGTACTTACTCGCGACAAAAACTGAAGTGATGAGCCC
GAAAAGTATTTCAAAATATTCACGTTTTTTTTTCTCTGCGCTTGACCATG
TATCGACGACTGCCCCCAAATGGTGACACGAATACACGGGAGTCACTACT
TCGAGATTTGTACCCGCAGGTCCTGAACATTTAGGCGCATGCGTTTTTAT
ATTTTTCGTGGAGTGAAAATTTGCCTAACAACGTGACCGTCCGTGTCACG
AGCTGTGGAATATTGGATAAATTGGAGTTTAGTGTTATATATATATGATG
ATGTGTTGTGTGTACGTACTAGGCTGTGAGACCCTTAAAAGCGCTGGGGT
AGTGTCGGAGGGATGGGGGTTACCGGAGGTAAATAGTTGAGTGTGACACA
TCCGTCTCTGTATAACCTTCATTTGAACGATGAGTGTACACAGTTGAGAT
TTGAGATTAGCTGCATCTTCTGAGTAAACTTCTTCTGTCAAGCGGGGTGA
ACTTGATCACAAATTGCGAAGTGGACCTAGTTCCAGATCATCAACTGATG
AATTATTCCTACGATGGCGGTACTGAATATGACATATCGGCACACAATAG
ATGATAACTTGTTGCGTTGTGTACGCATTGCTCGTGAAATAACGGTTCCG
TCTTTTTCCCCTGTTTTTACATTCATCTCGTTTCAGGTCCTCCAGCTAGC
CGCTAGGCTCGCGGCGCGCGTCGCCAGGGGTGAGGTGCTATACTTGCATT
GCTGGGGAGGGCACGGCCGTACGGGTACGGTAGTTTCGATTATGCTGAAT
CTGATGTATGACTTGAGCGCGGAGGAGGCCATGGAGCGTTGCCAGCACGT
TCATGATGTCCGGCGTATTCCTATCAACGTGGGCTCCCCCCAGACCGAGG
CACAGCGCGAACAAGTACGCCGGGTGGTCTGTCGGCTTGAACGACGATCG
GCGCGCGTCGCAGCCGCTGCCGTCGCTGCCGCGACCAGAGCCGCCATGCA
CCTTAAGCAGCAATCGTCCAACATCGGCAGCGGTGAGAACTCCGTGTTTT
CGGCGATTCCTGTAGATGGCGAGAAAGCAATATGCAGGCAAGGAGCGGGG
CTTGGAGCAAGAAAAACCGAGATTGGAGCTGCGGTTGCCGGTCGTAAGCA
GTCGTCTGCAGGCGGCGGCGGAGGCGCCTTGGGAGCAGGGGCTGTGGCAG
TGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3409:8222..13626+

>mRNA_H-paniculata_contig3409.9109.1 ID=mRNA_H-paniculata_contig3409.9109.1|Name=mRNA_H-paniculata_contig3409.9109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2274bp|location=Sequence derived from alignment at H-paniculata_contig3409:8222..13626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGACTCCAATGGCGTCTGAGAACAGCGCGCCCGCCCGTGGAGGATC
CTGTCAAAACATAGTTGCGAGGCCTCTGGTGCCCCCTACCGTTACTCCGT
CTTCCGTCATCATCTCCGAGGATTCATTGACTGATACGGAGCTGGATGAC
TTCCACCTGGAAGAGGCCGTTGGTAGTATATTGCGGGAAGTGGAGACTCC
AATGGCGTCTGAGAACAGCGCGCCCGCCCGTGGAGGATCCTGTCAAAACA
TAGTTGCGAGGCCTCTGGTGCCCCCTACCGTTACTCCGTCTTCCGTCATC
ATCTCCGAGGATTCATTGACTGATACGGAGCTGGATGACTTCCACCTGGA
AGAGGCCGTTGGTAGTATATTGCGGGAAGTGGAGAGTCTCCGCAAGTCCT
CCGCCTTCCCTGAACTGGACAGCTTCGGCGTTATAGATCAGAAGCATGAT
ACATATCTGGGTCCTACTATGGAGTCCAACTGGGTACTGCCGGGGAAACT
CCTTGTTGGGGCCTACCCGGCCTCCATGAACGATAGCCACCACGCGCATC
TGCTGTGTACCATCCTCCTCCAGGGCGTGTCGACATTTGTGTGTCTGCAG
CAGGAATACAGAGTCTCCGCAAGTCCTCCGCCTTCCCTGAACTGGACAGC
TTCGGCGTTATAGATCAGAAGCATGATACATATCTGGGTCCTACTATGGA
GTCCAACTGGGTACTGCCGGGGAAACTCCTTGTTGGGGCCTACCCGGCCT
CCATGAACGATAGCCACCACGCGCATCTGCTGTGTACCATCCTCCTCCAG
GGCGTGTCGACATTTGTGTGTCTGCAGCAGGAATACAGGGCACATGGAGT
GACGGAGGCGATGTGGCGGTCAGGCGAGGCGCTGCGGCCATATTTCCAGG
ACGTTTTGCAGTTGCTGCGTAAGCTGCGCGAGTTGAAGGCCGCTGATCCA
CGCGCTGTGCCTGCCATTTCGGCACCGGACGCGACGGACTTCGTGCATTT
TCCAATTGTGGATTGCAATGTGGCCGACGATACCAAGGGCACATGGAGTG
ACGGAGGCGATGTGGCGGTCAGGCGAGGCGCTGCGGCCATATTTCCAGGA
CGTTTTGCAGTTGCTGCGTAAGCTGCGCGAGTTGAAGGCCGCTGATCCAC
GCGCTGTGCCTGCCATTTCGGCACCGGACGCGACGGACTTCGTGCATTTT
CCAATTGTGGATTGCAATGTGGCCGACGATACCAAGGTCCTCCAGCTAGC
CGCTAGGCTCGCGGCGCGCGTCGCCAGGGGTGAGGTGCTATACTTGCATT
GCTGGGGAGGGCACGGCCGTACGGGTACGGTAGTTTCGATTATGCTGAAT
CTGATGTATGACTTGAGCGCGGAGGAGGCCATGGAGCGTTGCCAGCACGT
TCATGATGTCCGGCGTATTCCTATCAACGTGGGCTCCCCCCAGACCGAGG
CACAGCGCGAACAAGTACGCCGGGTGGTCTGTCGGCTTGAACGACGATCG
GCGCGCGTCGCAGCCGCTGCCGTCGCTGCCGCGACCAGAGCCGCCATGCA
CCTTAAGCAGCAATCGTCCAACATCGGCAGCGGTGAGAACTCCGTGTTTT
CGGCGATTCCTGTAGATGGCGAGAAAGCAATATGCAGGCAAGGAGCGGGG
CTTGGAGCAAGAAAAACCGAGATTGGAGCTGCGGTTGCCGGTCGTAAGCA
GTCGTCTGCAGGCGGCGGCGGAGGCGCCTTGGGAGCAGGGGCTGTGGCAG
TGGTGGTCCTCCAGCTAGCCGCTAGGCTCGCGGCGCGCGTCGCCAGGGGT
GAGGTGCTATACTTGCATTGCTGGGGAGGGCACGGCCGTACGGGTACGGT
AGTTTCGATTATGCTGAATCTGATGTATGACTTGAGCGCGGAGGAGGCCA
TGGAGCGTTGCCAGCACGTTCATGATGTCCGGCGTATTCCTATCAACGTG
GGCTCCCCCCAGACCGAGGCACAGCGCGAACAAGTACGCCGGGTGGTCTG
TCGGCTTGAACGACGATCGGCGCGCGTCGCAGCCGCTGCCGTCGCTGCCG
CGACCAGAGCCGCCATGCACCTTAAGCAGCAATCGTCCAACATCGGCAGC
GGTGAGAACTCCGTGTTTTCGGCGATTCCTGTAGATGGCGAGAAAGCAAT
ATGCAGGCAAGGAGCGGGGCTTGGAGCAAGAAAAACCGAGATTGGAGCTG
CGGTTGCCGGTCGTAAGCAGTCGTCTGCAGGCGGCGGCGGAGGCGCCTTG
GGAGCAGGGGCTGTGGCAGTGGTG
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