mRNA_H-paniculata_contig34086.9108.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34086.9108.1
Unique NamemRNA_H-paniculata_contig34086.9108.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 1.540e-67
Identity = 121/288 (42.01%), Postives = 176/288 (61.11%), Query Frame = 1
Query:    1 KCRPICVGSTMWRTLAAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRHWLITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMDTGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNHIPTEREIAALAAMGISVAEGGGAAVVGIPIGADAFVQQRAVTEAKEKGAEHLACLLAHMPDKQAAMLIATKSRVLKTCVLERG 864
            KCRP+C+G T  R +AAG VR+++PKL+E+     Q+ VAV+GG E V + A++ HQ  HW++  DC+NAFNT +R AI+ +       L  ++A+ Y E  A  I  MD+GERR I   +G+ QG+G+GP LF   + PI+ K R +++ LGV L AY+DD+ L    +  EN++ I  L  EL  +G+  N  K+ A+ P  H  T  E   L   G+ +AE G   VVG+PIG DA+V+  A+    E GA+ LA +L HMPDKQ A L+ ++S   ++  +ERG
Sbjct:   34 KCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCYDEISAKSIYAMDSGERRTIECKSGVQQGDGMGPPLFFFILFPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVLTEGGADKLARMLVHMPDKQVAHLVTSQSLTQRSGNIERG 320          
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 8.410e-67
Identity = 122/289 (42.21%), Postives = 178/289 (61.59%), Query Frame = 1
Query:    1 KCRPICVGSTMWRTLAAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRHWLITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMDTGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLV-LAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNHIPTEREIAALAAMGISVAEGGGAAVVGIPIGADAFVQQRAVTEAKEKGAEHLACLLAHMPDKQAAMLIATKSRVLKTCVLERG 864
            KCRP+C+G T  R +AAG VR+++PKL+E+     Q+ VAV+GG E V + A++ HQ  HW++  DC+NAFNT +R AI+ +       L  ++A+ Y E PA  I  MD+GERR I   +G+ QG+G+GP LFC  + PI+ K R +++ LGV L AY+DD++ L    +  EN++ I  L  EL  +G+  N  K+ A+ P  H  T  E   L   G+ +AE G   VVG+PIG DA+V+  A+    E GA+ LA +L  MPDKQ A L+ ++S   ++  +ERG
Sbjct:   77 KCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERG 364          
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 3.480e-66
Identity = 123/288 (42.71%), Postives = 177/288 (61.46%), Query Frame = 1
Query:    1 KCRPICVGSTMWRTLAAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRHWLITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMDTGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNHIPTEREIAALAAMGISVAEGGGAAVVGIPIGADAFVQQRAVTEAKEKGAEHLACLLAHMPDKQAAMLIATKSRVLKTCVLERG 864
            KCRP+C+G T  R +AAG VR+++PKL+E+     Q+ VAV+GG E V + A++ HQ  HW++  DC+NAFNT +R AI+ +       L  ++A+ Y E PA  I  MD+GERR I   +G+ QG+G+GP LFC  + PI+ K R +++ LGV L AY+DD+ L   ++  EN++    L  EL  +G+  N  K+ A+ P  H  T  E   L   G+ +AE G   VVG+PIG DA+V+  A+    E GAE LA LL  MPDKQ A L+ ++S   ++  +ERG
Sbjct:  445 KCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGAEKLARLLVRMPDKQVAHLVTSQSLTQRSGYIERG 731          
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 3.250e-65
Identity = 119/288 (41.32%), Postives = 187/288 (64.93%), Query Frame = 1
Query:    1 KCRPICVGSTMWRTLAAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRHWLITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMDTGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNHIPTEREIAALAAMGISVAEGGGAAVVGIPIGADAFVQQRAVTEAKEKGAEHLACLLAHMPDKQAAMLIATKSRVLKTCVLERG 864
            KCRP+C+G T  R +AAG VRQ++PKL+E+     Q+ VAV+GG E V + A++ HQ  +W+I  DC+NAFNT +R AI+ +       L  ++A+ Y E PA  + +MD+GERR +   +G+ QG+G+GP LF + + PI+ K +++++ LGV   AY+DD+ L + +L EE+++A+  L  EL  +G+  N AK+ A+ P  H+ T+++   L  +G++VA G G  VVG+PIG D +V++ A+    E GAE LA +L  M D+Q A LI + S + ++  +ERG
Sbjct:  616 KCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEESVQAMTDLVDELAEVGIVVNRAKSSALPPPGHMITDQQRRLLEGVGLTVA-GEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERG 902          
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 8.860e-65
Identity = 122/288 (42.36%), Postives = 177/288 (61.46%), Query Frame = 1
Query:    1 KCRPICVGSTMWRTLAAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRHWLITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMDTGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNHIPTEREIAALAAMGISVAEGGGAAVVGIPIGADAFVQQRAVTEAKEKGAEHLACLLAHMPDKQAAMLIATKSRVLKTCVLERG 864
            KCRP+C+G T  R +AAG VR+++PKL+E+     Q+ VAV+GG E V + A++ HQ  HW++  DC+NAFNT +R AI+ +       L  ++A+ Y E PA  I  MD+GERR I   +G+ QG+G+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +  EN++ I  L  EL  +G+  N  K+ A+ P  H  T  E   L   G+ +AE G   VVG+PIG DA+V+  A+    E GA+ LA +L  MPDKQ A L+ ++S   ++  +ERG
Sbjct:  446 KCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERG 732          
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 2.390e-64
Identity = 123/290 (42.41%), Postives = 178/290 (61.38%), Query Frame = 1
Query:    1 KCRPICVGSTMWRTLAAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRHWLITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMDTGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNH--IPTEREIAALAAMGISVAEGGGAAVVGIPIGADAFVQQRAVTEAKEKGAEHLACLLAHMPDKQAAMLIATKSRVLKTCVLERG 864
            KCRP+C+G T  R +AAG VR+++PKL+E+     Q+ VAV+GG E V + A++ HQ  HW++  DC+NAFNT +R AI+ +       L  ++A+ Y E PA  I  MD+GERR I   +G+ QG+G+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +  EN++ I  L  EL  +G+  N  K+ A+ P      P ER +  L   G+ +AE G   VVG+PIG DA+V+  A+    E GA+ LA +L  MPDKQ A L+ ++S   ++  LERG
Sbjct:  467 KCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLERG 753          
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 3.470e-62
Identity = 113/266 (42.48%), Postives = 161/266 (60.53%), Query Frame = 1
Query:    1 KCRPICVGSTMWRTLAAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRHWLITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMDTGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNHIPTEREIAALAAMGISVAEGGGAAVVGIPIGADAFVQQRAVTEAKEKGAEHLACLLAHMPD 798
            KCRP+C+G T  R +AAG VR+++PKL+E+     Q+ VAV+GG E V + A++ HQ  HW++  DC+NAFNT +R AI+ +       L  ++A+ Y E PA  I  MD+G RR I    G+ QG+G+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +  EN++ I  L  EL  +G+  N  K+ A+ P  H  T  E   L   G+ +AE G   VVG+PIG DA+V+  A+    E GA+ LA +L  MPD
Sbjct:  168 KCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPD 432          
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.470e-58
Identity = 115/278 (41.37%), Postives = 167/278 (60.07%), Query Frame = 1
Query:   34 WRTL-AAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRHWLITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMDTGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNHIPTEREIAALAAMGISVAEGGGAAVVGIPIGADAFVQQRAVTEAKEKGAEHLACLLAHMPDKQAAMLIATKSRVLKTCVLERG 864
            WR L AAG VR+++PKL+E+     Q+  AV GG E V + A++ HQ  HW++  DC+NAFNT +R AI+ +       L  ++A+ Y E PA  I  MD+GERR I   +G+ QG+G+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +  EN++ I  +  EL  +G+  N  K+ A+ P  H  T  E   L   G+ +AE G   VVG+PIG DA+V+  A+    E GA+ LA +L  MPDKQ A L+ ++S   ++  +ERG
Sbjct:    3 WRRLIAAGTVREWKPKLEEIFREADQFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERG 279          
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 6.470e-56
Identity = 101/244 (41.39%), Postives = 149/244 (61.07%), Query Frame = 1
Query:    1 KCRPICVGSTMWRTLAAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRHWLITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMDTGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNHIPTEREIAALAAMGISVAEGGGAAVVGIPIGADAFVQQR 732
            KCRP+C+G T  R +AAG VR+++PKL+E+     Q+ VAV+GG E V + A++ HQ  HW++  DC++AFNT +R  I+ +       +  ++A+ Y E PA  I  MD+GERR I   +G+ QG+G+GP LFC  + PI+ K R  ++ LGV L AY+DD+ L    +  EN++ I  L  EL  +G+  N  K+ A+ P  H  T  E   L   G+ +AE G   VVG+PIG DA+V+ +
Sbjct:   70 KCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDK 312          
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 3.150e-53
Identity = 118/339 (34.81%), Postives = 172/339 (50.74%), Query Frame = 1
Query:    1 KCRPICVGSTMWRTLAAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRHWL---------------------------------------------------ITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMDTGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNHIPTEREIAALAAMGISVAEGGGAAVVGIPIGADAFVQQRAVTEAKEKGAEHLACLLAHMPDKQAAMLIATKSRVLKTCVLERG 864
            KCRP+C+G T  R +AAG VR+++P L+E      Q+ VAV  G E V + A++ HQ  HW+                                                   +  DC+NAFNT +R AI+ +       L  ++A+ Y E PA  I  MD+GERR I   +G+ QG+G+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +  EN++ I  L  EL  +G+  N  K+ A+ P  H  T  E   L   G+ +AE G   VVG+PIG DA+V+  A+    E GA+ LA ++  MPDKQ A L+ ++    ++  +ERG
Sbjct:   34 KCRPVCIGMTWRRVIAAGTVREWKPNLEERFREADQFGVAVVAGVEQVAMDAQLVHQTGHWVKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGQWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMVVRMPDKQVAHLVTSQLLTQRSGNIERG 371          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34086.9108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDD0_9PHAE1.540e-6742.01Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE8.410e-6742.21Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKQ2_9PHAE3.480e-6642.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE3.250e-6541.32Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE8.860e-6542.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JI32_9PHAE2.390e-6442.41Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE3.470e-6242.48Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KYJ9_9PHAE1.470e-5841.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0V7_9PHAE6.470e-5641.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLG6_9PHAE3.150e-5334.81Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34086contigH-paniculata_contig34086:84..950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog296587.XP_002506989.1
Hectar predicted targeting categorymitochondrion
EggNOG OGs2E24P@1,2S9D9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size867
Cds size837
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.544368-CDS-H-paniculata_contig34086:83..9201622930052.544368-CDS-H-paniculata_contig34086:83..920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34086 84..920 -
1691481127.2401416-CDS-H-paniculata_contig34086:83..9201691481127.2401416-CDS-H-paniculata_contig34086:83..920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34086 84..920 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.5573955-UTR-H-paniculata_contig34086:920..9501622930052.5573955-UTR-H-paniculata_contig34086:920..950Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34086 921..950 -
1691481127.2502239-UTR-H-paniculata_contig34086:920..9501691481127.2502239-UTR-H-paniculata_contig34086:920..950Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34086 921..950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34086.9108.1prot_H-paniculata_contig34086.9108.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34086 84..920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34086.9108.1

>prot_H-paniculata_contig34086.9108.1 ID=prot_H-paniculata_contig34086.9108.1|Name=mRNA_H-paniculata_contig34086.9108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp
MWRTLAAGVVRQYRPKLKEVNLSERQYEVAVSGGAELVGLRAKVHHQLRH
WLITLDCTNAFNTVRRAAILEEVVIRTLRLTPFVAKSYGEKPADIILQMD
TGERRKISSNTGIHQGNGLGPALFCMPVGPILRKCREQFEALGVELLAYL
DDLVLAMGELREENLRAIHFLTKELVRIGVQNNNAKTKAVAPMNHIPTER
EIAALAAMGISVAEGGGAAVVGIPIGADAFVQQRAVTEAKEKGAEHLACL
LAHMPDKQAAMLIATKSRVLKTCVLERG*
back to top

mRNA from alignment at H-paniculata_contig34086:84..950-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34086.9108.1 ID=mRNA_H-paniculata_contig34086.9108.1|Name=mRNA_H-paniculata_contig34086.9108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at H-paniculata_contig34086:84..950- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTGCCGCCCGATCTGCGTGGGATCTACGATGTGGCGTACTCTGGCCGC TGGGGTGGTCAGACAATACAGGCCGAAACTGAAGGAGGTTAACCTGTCAG AGCGGCAATACGAGGTAGCGGTCTCGGGCGGCGCGGAGCTCGTGGGCCTC CGCGCGAAAGTACACCACCAATTGAGGCATTGGCTCATCACCCTCGACTG TACAAACGCATTCAACACCGTCAGGCGGGCGGCGATCTTGGAAGAAGTGG TAATCCGCACCCTACGACTGACACCTTTCGTAGCCAAAAGCTACGGGGAG AAGCCGGCAGACATCATTCTCCAGATGGACACCGGTGAACGCAGGAAAAT CTCCTCGAACACGGGAATCCACCAGGGCAACGGACTGGGACCCGCCCTGT TTTGCATGCCCGTGGGACCGATCTTGCGCAAGTGCCGAGAACAATTCGAG GCTCTGGGGGTGGAGCTATTGGCCTACCTGGACGATCTGGTGCTGGCAAT GGGAGAGCTGAGGGAAGAAAACTTACGGGCGATCCATTTCCTCACGAAAG AGCTAGTACGCATAGGAGTGCAGAATAACAATGCGAAGACGAAGGCGGTG GCCCCAATGAACCACATTCCCACCGAAAGGGAGATCGCTGCGCTGGCGGC GATGGGCATCAGCGTCGCAGAGGGAGGGGGGGCTGCAGTGGTGGGTATAC CGATTGGGGCCGACGCATTCGTTCAGCAGCGCGCCGTCACCGAAGCCAAG GAAAAGGGGGCAGAGCATCTTGCGTGCCTACTAGCTCATATGCCCGACAA ACAAGCGGCGATGCTGATCGCCACAAAGTCCAGGGTCCTGAAGACCTGCG TCCTGGAGAGAGGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig34086:84..950-

>mRNA_H-paniculata_contig34086.9108.1 ID=mRNA_H-paniculata_contig34086.9108.1|Name=mRNA_H-paniculata_contig34086.9108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at H-paniculata_contig34086:84..950- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGCGTACTCTGGCCGCTGGGGTGGTCAGACAATACAGGCCGAAACT
GAAGGAGGTTAACCTGTCAGAGCGGCAATACGAGGTAGCGGTCTCGGGCG
GCGCGGAGCTCGTGGGCCTCCGCGCGAAAGTACACCACCAATTGAGGCAT
TGGCTCATCACCCTCGACTGTACAAACGCATTCAACACCGTCAGGCGGGC
GGCGATCTTGGAAGAAGTGGTAATCCGCACCCTACGACTGACACCTTTCG
TAGCCAAAAGCTACGGGGAGAAGCCGGCAGACATCATTCTCCAGATGGAC
ACCGGTGAACGCAGGAAAATCTCCTCGAACACGGGAATCCACCAGGGCAA
CGGACTGGGACCCGCCCTGTTTTGCATGCCCGTGGGACCGATCTTGCGCA
AGTGCCGAGAACAATTCGAGGCTCTGGGGGTGGAGCTATTGGCCTACCTG
GACGATCTGGTGCTGGCAATGGGAGAGCTGAGGGAAGAAAACTTACGGGC
GATCCATTTCCTCACGAAAGAGCTAGTACGCATAGGAGTGCAGAATAACA
ATGCGAAGACGAAGGCGGTGGCCCCAATGAACCACATTCCCACCGAAAGG
GAGATCGCTGCGCTGGCGGCGATGGGCATCAGCGTCGCAGAGGGAGGGGG
GGCTGCAGTGGTGGGTATACCGATTGGGGCCGACGCATTCGTTCAGCAGC
GCGCCGTCACCGAAGCCAAGGAAAAGGGGGCAGAGCATCTTGCGTGCCTA
CTAGCTCATATGCCCGACAAACAAGCGGCGATGCTGATCGCCACAAAGTC
CAGGGTCCTGAAGACCTGCGTCCTGGAGAGAGGGTGAATGTGGCGTACTC
TGGCCGCTGGGGTGGTCAGACAATACAGGCCGAAACTGAAGGAGGTTAAC
CTGTCAGAGCGGCAATACGAGGTAGCGGTCTCGGGCGGCGCGGAGCTCGT
GGGCCTCCGCGCGAAAGTACACCACCAATTGAGGCATTGGCTCATCACCC
TCGACTGTACAAACGCATTCAACACCGTCAGGCGGGCGGCGATCTTGGAA
GAAGTGGTAATCCGCACCCTACGACTGACACCTTTCGTAGCCAAAAGCTA
CGGGGAGAAGCCGGCAGACATCATTCTCCAGATGGACACCGGTGAACGCA
GGAAAATCTCCTCGAACACGGGAATCCACCAGGGCAACGGACTGGGACCC
GCCCTGTTTTGCATGCCCGTGGGACCGATCTTGCGCAAGTGCCGAGAACA
ATTCGAGGCTCTGGGGGTGGAGCTATTGGCCTACCTGGACGATCTGGTGC
TGGCAATGGGAGAGCTGAGGGAAGAAAACTTACGGGCGATCCATTTCCTC
ACGAAAGAGCTAGTACGCATAGGAGTGCAGAATAACAATGCGAAGACGAA
GGCGGTGGCCCCAATGAACCACATTCCCACCGAAAGGGAGATCGCTGCGC
TGGCGGCGATGGGCATCAGCGTCGCAGAGGGAGGGGGGGCTGCAGTGGTG
GGTATACCGATTGGGGCCGACGCATTCGTTCAGCAGCGCGCCGTCACCGA
AGCCAAGGAAAAGGGGGCAGAGCATCTTGCGTGCCTACTAGCTCATATGC
CCGACAAACAAGCGGCGATGCTGATCGCCACAAAGTCCAGGGTCCTGAAG
ACCTGCGTCCTGGAGAGAGGGTGA
back to top