mRNA_H-paniculata_contig3408.9106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3408.9106.1
Unique NamemRNA_H-paniculata_contig3408.9106.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3408.9106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3408contigH-paniculata_contig3408:2507..4220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.2772126-CDS-H-paniculata_contig3408:2506..25681622930052.2772126-CDS-H-paniculata_contig3408:2506..2568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3408 2507..2568 +
1691481127.1633894-CDS-H-paniculata_contig3408:2506..25681691481127.1633894-CDS-H-paniculata_contig3408:2506..2568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3408 2507..2568 +
1622930052.2959683-CDS-H-paniculata_contig3408:3995..42181622930052.2959683-CDS-H-paniculata_contig3408:3995..4218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3408 3996..4218 +
1691481127.1737378-CDS-H-paniculata_contig3408:3995..42181691481127.1737378-CDS-H-paniculata_contig3408:3995..4218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3408 3996..4218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3408.9106.1prot_H-paniculata_contig3408.9106.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3408 2507..4218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3408.9106.1

>prot_H-paniculata_contig3408.9106.1 ID=prot_H-paniculata_contig3408.9106.1|Name=mRNA_H-paniculata_contig3408.9106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
LVDGCWIGEDKSTILASFTPRGLGNMHEVKDILCCHHRDVGTTIDVSGGP
AASSPVSGMVASSMAGGSVAPLDLASAPTSPVEVDSCAPPTAQLV
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mRNA from alignment at H-paniculata_contig3408:2507..4220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3408.9106.1 ID=mRNA_H-paniculata_contig3408.9106.1|Name=mRNA_H-paniculata_contig3408.9106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1714bp|location=Sequence derived from alignment at H-paniculata_contig3408:2507..4220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTAGATGGCTGCTGGATAGGAGAGGACAAGAGCACAATACTAGCAAG
CTTTACACCGAGGTATGATAGAAGAGATGCGGACTTATACATAGTCTCCG
CAGAACACACCATAACAGCACATTCCACAGGATGACTCGTTTAATGGCTG
TCTGTATTGTATATGCTGACCCTACAGAGGTGGGGTGCGTTGGCAACGCC
CGATACCCCCACACTACTAAGATATCACAACGGATAGGCTAGAAGTTATG
GAATGCTTTCGTTCTCGGTGAGGTTAAAACAAAACGTGCCTTGATTTAAC
GTGTGCACACTGCCCAAGAGATTCAGCACATTTAGCACAATGTGGCGTTT
CGGAACAGAAATACATCTGCGGTACGGCTATTCTGACTGTACTGACTGTC
TAAACTCGCGTTTCCCTCGTGTTATCCTTTGGTACTTGCAGTACTTGTAC
TCAAAGTTGGACACGACTACTGACTCTAGTGAGTCAATCAGAGGGTGTTT
AATCTTGGATGTGGCAGGTGCTGTGGGTGACCCGTTACTCTCGACGCCAG
AGGTCTATCAAGAATTGTCTCTGTTTGGGTGTCATTCATTATGCTTTCGA
CTTGAGGAAAAAATTAAACAAGCACACATATGCAAAAGCTTAGCCCACTT
CTTATGGGAAACTGAAATTCTTGAGGTGTTCCAAACTTGGACAGGCGTTA
GTGTTTGCAAGGATAGGAATGTGGAGCAATGATCTAGTTCGTTTAGAAAA
GCGCGCGCGAATTGCCTTCCGGTTCTTTTTAATTATCTAAGTCAGATGGA
GAAAGAAGAGTCACTTGGATTCTTTTTCGAAATTATCCATTTTTTTTTCT
CCATGAGAAGTGGTTTGGATTCTCCACCTGGACTCATCACAAGAATCCGA
GTATCATAAGAAGTGGTCTAAGATGAGCGACCAATTTGATCAGACGGTTT
TCTTCATATTCGTAAGAATGAAAAATATACGTTTTTGATTGAATTTTTTT
CGACCTCTCAAGAAATGACCTTATTAGGCCACTTCTTATGGGACTTGGAT
TACATTTTAAGAATCCAATTTTGAAAAAGAATCCGAGTCCCTTAAGAAGT
GACTTATATCCGGAAATTTCGGTAAGATTGAGTCCCTCAAGGCTTCAACC
AATGAATGAGACAAACCTACCACAAATCCTACAGTATCGTCTTGAAGCCA
GCGGCAAACACACAGACAGTAACATAGCGCATTTTGATGGAACGAGCCTT
AGTTTCCGAGAAACCGAATAATAGAGCGTTTGCGCGAAAGGTTTTTCATT
TGGGCATTTTGATTTGTAGAATCAGATTTTCGTCGGATCGAGATACGAAT
TCCTGTCAAATTCAGGTGCTGAAAAAAGTGTGCACCAATCAGATTATTTG
ATCATGATTTGATTGTACAAAAATTGGGGTACCCCAATTTTATCACTGGG
GCCCCACTCGATTGTTGTCGGTATCCGGGCATCAAGCAGGGGCCTTGGAA
ACATGCACGAGGTGAAAGACATCTTGTGCTGTCACCATAGAGACGTCGGA
ACCACGATAGATGTCAGTGGCGGACCAGCAGCTTCATCTCCAGTGTCAGG
AATGGTGGCTTCCAGCATGGCGGGCGGCAGTGTTGCCCCACTGGATCTAG
CGAGCGCCCCCACTTCTCCTGTTGAGGTCGATTCGTGTGCACCCCCGACC
GCACAGCTAGTCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3408:2507..4220+

>mRNA_H-paniculata_contig3408.9106.1 ID=mRNA_H-paniculata_contig3408.9106.1|Name=mRNA_H-paniculata_contig3408.9106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig3408:2507..4220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTAGATGGCTGCTGGATAGGAGAGGACAAGAGCACAATACTAGCAAG
CTTTACACCGAGCTGGTAGATGGCTGCTGGATAGGAGAGGACAAGAGCAC
AATACTAGCAAGCTTTACACCGAGGGGCCTTGGAAACATGCACGAGGTGA
AAGACATCTTGTGCTGTCACCATAGAGACGTCGGAACCACGATAGATGTC
AGTGGCGGACCAGCAGCTTCATCTCCAGTGTCAGGAATGGTGGCTTCCAG
CATGGCGGGCGGCAGTGTTGCCCCACTGGATCTAGCGAGCGCCCCCACTT
CTCCTGTTGAGGTCGATTCGTGTGCACCCCCGACCGCACAGCTAGTCGGG
CCTTGGAAACATGCACGAGGTGAAAGACATCTTGTGCTGTCACCATAGAG
ACGTCGGAACCACGATAGATGTCAGTGGCGGACCAGCAGCTTCATCTCCA
GTGTCAGGAATGGTGGCTTCCAGCATGGCGGGCGGCAGTGTTGCCCCACT
GGATCTAGCGAGCGCCCCCACTTCTCCTGTTGAGGTCGATTCGTGTGCAC
CCCCGACCGCACAGCTAGTC
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