mRNA_H-paniculata_contig34069.9103.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34069.9103.1
Unique NamemRNA_H-paniculata_contig34069.9103.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Match: A0A6H5JQV0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.150e-21
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 AVNLDVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFHVAAYDPATGDLVGRGMLFGFR 213
            AVN+D++MN EI+LWAA NGG+  Y  AV+ HADTTW D VRDD ST+HVA YDP+TG+LV +G   G++
Sbjct:   98 AVNVDMIMNMEIMLWAAVNGGDAEYSDAVENHADTTWADLVRDDYSTYHVADYDPSTGELVDKGTYQGWQ 167          
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 8.060e-21
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    4 AVNLDVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFHVAAYDPATGDLVGRGMLFGFR 213
            AVN+D++MN EI+LWAA NGG+  Y  AV+ HADTTW D VR+D ST+HVA YDP+TGDL  +G   G++
Sbjct:   98 AVNVDMIMNMEIMLWAANNGGDTDYSDAVENHADTTWADLVREDYSTYHVADYDPSTGDLEDKGTYQGWQ 167          
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.610e-18
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    4 AVNLDVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFHVAAYDPATGDLVGRGMLFGFR 213
            AVN+D++MN EI+LWAA N G+  Y  A + HADTTW D VRDD STFHVA Y+ +TG+LV +G   G++
Sbjct:  156 AVNVDMIMNMEIMLWAAVNDGDAEYSDAAENHADTTWADLVRDDYSTFHVADYNKSTGELVDKGTYQGWQ 225          
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Match: A0A6H5KCI0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.450e-17
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    4 AVNLDVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFHVAAYDPATGDLVGRGMLFGF 210
            AVN+D+MMN EILLWA  NGG D  L  V  HAD+TWKD VR+DNST HVAAYD  TG+L+  G   G+
Sbjct:  223 AVNVDMMMNLEILLWAGLNGGEDHELE-VAGHADSTWKDIVREDNSTNHVAAYDIDTGELIETGTYQGY 290          
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Match: D8LHN8_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN8_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.480e-17
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    4 AVNLDVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFHVAAYDPATGDLVGRGMLFGF 210
            AVN+D+MMN EILLWA  NGG D  L  V+ HAD+TWKD VR+DNST HVAAYD  TG+ +  G   G+
Sbjct:  186 AVNVDMMMNLEILLWAGLNGGEDHELE-VEGHADSTWKDIVREDNSTNHVAAYDIDTGEFIETGTYQGY 253          
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Match: A0A366VXF1_9GAMM (Uncharacterized protein n=2 Tax=Psychromonas sp. B3M02 TaxID=2267226 RepID=A0A366VXF1_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-14
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    7 VNLDVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFHVAAYDPATGDLVGRGMLFG 207
            V +D+MMN E+LLWAAENGG+  +    K HA  T++DF+R+D S++H+  Y+  TG+++ +G L G
Sbjct:  180 VVIDIMMNLELLLWAAENGGDTQWAEIAKDHALKTYQDFIREDGSSYHIVRYNKTTGEVINKGTLQG 246          
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Match: A0A6N6ZAI7_9BACT (Putative unsaturated glucuronyl hydrolase n=1 Tax=Puniceicoccaceae bacterium 5H TaxID=2508868 RepID=A0A6N6ZAI7_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 2.980e-13
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    7 VNLDVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFHVAAYD 165
            VN+D+MMN EI+LWA+++GGN A+  A   HAD +W+D VRDD STFHV  Y+
Sbjct:  178 VNIDMMMNMEIILWASQHGGNTAWADAAISHADASWEDLVRDDYSTFHVVDYN 230          
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Match: UPI001357D25C (glycoside hydrolase family 88 protein n=2 Tax=unclassified Psychromonas TaxID=2614957 RepID=UPI001357D25C)

HSP 1 Score: 71.6 bits (174), Expect = 7.290e-13
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   16 DVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFHVAAYDPATGDLVGRGMLFG 207
            D+MMN E+LLWAAENGG+  +    K HA  T+KDFVR++ S++H+  Y+  +G ++ +G L G
Sbjct:  192 DIMMNLELLLWAAENGGDKKWAEYAKTHALKTYKDFVRENGSSYHIVRYNKDSGAIINKGTLQG 255          
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Match: A0A841H3G4_9BACT (Uncharacterized protein n=2 Tax=Longimicrobium terrae TaxID=1639882 RepID=A0A841H3G4_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 4.340e-11
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   16 DVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFHVAAYDPATGDLVGRGMLFGF 210
            D MMN E+LLWAA NGG+ A+    KRHA+TT +  +R D  ++H+  +D ATG +V R  + G+
Sbjct:  182 DNMMNLEMLLWAARNGGDPAWTELSKRHAETTMRAHLRPDGGSYHLVDFDSATGAIVARKTVQGY 246          
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Match: UPI001FE32E8F (glycoside hydrolase family 88 protein n=1 Tax=Flavihumibacter stibioxidans TaxID=1834163 RepID=UPI001FE32E8F)

HSP 1 Score: 65.5 bits (158), Expect = 1.120e-10
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    7 VNLDVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFHVAAYDPATGDLVGRGMLFGF 210
            V +D MMN E+L WAA+  G+ ++     +HA+TT K+ VR D+S+FHV  YDP +G ++ +  L GF
Sbjct:  180 VIMDNMMNLELLFWAAKETGDSSFYHIAVKHAETTRKNHVRPDHSSFHVVNYDPVSGKMLHQQTLQGF 247          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34069.9103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQV0_9PHAE2.150e-2161.43GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FQV4_ECTSI8.060e-2160.00Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
D7FUJ9_ECTSI1.610e-1857.14Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
A0A6H5KCI0_9PHAE1.450e-1762.32GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LHN8_ECTSI1.480e-1760.87Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A366VXF1_9GAMM1.600e-1446.27Uncharacterized protein n=2 Tax=Psychromonas sp. B... [more]
A0A6N6ZAI7_9BACT2.980e-1358.49Putative unsaturated glucuronyl hydrolase n=1 Tax=... [more]
UPI001357D25C7.290e-1346.88glycoside hydrolase family 88 protein n=2 Tax=uncl... [more]
A0A841H3G4_9BACT4.340e-1146.15Uncharacterized protein n=2 Tax=Longimicrobium ter... [more]
UPI001FE32E8F1.120e-1044.12glycoside hydrolase family 88 protein n=1 Tax=Flav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34069contigH-paniculata_contig34069:1413..2151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue6.7e-18
Seed eggNOG ortholog2880.D7FUK0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.1203613-CDS-H-paniculata_contig34069:1412..15071622930052.1203613-CDS-H-paniculata_contig34069:1412..1507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34069 1413..1507 +
1691481127.1226184-CDS-H-paniculata_contig34069:1412..15071691481127.1226184-CDS-H-paniculata_contig34069:1412..1507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34069 1413..1507 +
1622930052.136398-CDS-H-paniculata_contig34069:2015..21511622930052.136398-CDS-H-paniculata_contig34069:2015..2151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34069 2016..2151 +
1691481127.1333354-CDS-H-paniculata_contig34069:2015..21511691481127.1333354-CDS-H-paniculata_contig34069:2015..2151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34069 2016..2151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34069.9103.1prot_H-paniculata_contig34069.9103.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34069 1413..2151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34069.9103.1

>prot_H-paniculata_contig34069.9103.1 ID=prot_H-paniculata_contig34069.9103.1|Name=mRNA_H-paniculata_contig34069.9103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MAVNLDVMMNTEILLWAAENGGNDAYLTAVKRHADTTWKDFVRDDNSTFH
VAAYDPATGDLVGRGMLFGFRFRFDF*
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mRNA from alignment at H-paniculata_contig34069:1413..2151+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34069.9103.1 ID=mRNA_H-paniculata_contig34069.9103.1|Name=mRNA_H-paniculata_contig34069.9103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=739bp|location=Sequence derived from alignment at H-paniculata_contig34069:1413..2151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTGAACCTGGACGTGATGATGAACACGGAGATCTTGCTGTGGGC AGCGGAGAATGGCGGCAACGATGCCTACCTGACTGCTGTCAAACGGTGAG GAAAGAAGAGAGAGATAGAAATAAGAGAGAGGGGGGCGGGAGGGGAGCAG GCAGGGGCAGGGAAAGAGAAAGGCAGAGAGACAGACATACGATAAAAATA GGAGACTCTTTTGTGGATTTTGTCTCTATCGTACATCATGCCCTCAGCTG TACACTGTAGTGCACCCGCTACATGGGGATAAGCCTCCCGTCACGATGAA AAAGCAAAATGGCTGATGTAGTGTACAAGCCTCTCTCTTCTATTTATAGT GTACTATTGGGAGTATATTTTACTGTTTGTATGGTTTTTCCTCCCTCTTT TTTAACCACCGCATCGGAATCGATCTCTGCATATGCCATGCCATGTCATG TCATGTCATGACATGGATTTGATGAACCTCGCCCCCTCCCACCCACCCAC TGCGTCCTCTCTTCCTCTCGGATTTTTGCCCGGATTGAATTTGTGGATGA CTGTTGTGACTTACGGGGCGCACTCACAACCCGCCAACATGAACATAATA CAGGCATGCGGATACGACGTGGAAAGACTTCGTTCGGGATGACAACAGCA CATTTCATGTCGCCGCATACGATCCCGCCACGGGCGATTTGGTAGGCCGA GGTATGTTATTTGGTTTTCGTTTTCGTTTTGATTTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig34069:1413..2151+

>mRNA_H-paniculata_contig34069.9103.1 ID=mRNA_H-paniculata_contig34069.9103.1|Name=mRNA_H-paniculata_contig34069.9103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig34069:1413..2151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTGAACCTGGACGTGATGATGAACACGGAGATCTTGCTGTGGGC
AGCGGAGAATGGCGGCAACGATGCCTACCTGACTGCTGTCAAACGATGGC
TGTGAACCTGGACGTGATGATGAACACGGAGATCTTGCTGTGGGCAGCGG
AGAATGGCGGCAACGATGCCTACCTGACTGCTGTCAAACGGCATGCGGAT
ACGACGTGGAAAGACTTCGTTCGGGATGACAACAGCACATTTCATGTCGC
CGCATACGATCCCGCCACGGGCGATTTGGTAGGCCGAGGTATGTTATTTG
GTTTTCGTTTTCGTTTTGATTTTTGAGCATGCGGATACGACGTGGAAAGA
CTTCGTTCGGGATGACAACAGCACATTTCATGTCGCCGCATACGATCCCG
CCACGGGCGATTTGGTAGGCCGAGGTATGTTATTTGGTTTTCGTTTTCGT
TTTGATTTTTGA
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