mRNA_H-paniculata_contig34068.9102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34068.9102.1
Unique NamemRNA_H-paniculata_contig34068.9102.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 266 bits (680), Expect = 1.340e-80
Identity = 165/406 (40.64%), Postives = 228/406 (56.16%), Query Frame = 1
Query:    1 RAAMEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKARLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRSLGKSLYGLKQSGRNWINTLDDFLVGIGLERSTTDSCLYSSRDDGGEKDLLVAVYVDDLVIA-GRREKVDESKHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGFDECRGV--PPYRGKRVQES--SRGRSGNSTEN----RGMVGSFMYASTGTRPDMAYAVHQAAPRTEDPCPEDLST*KRIFCYLSTVPDFGITFGSKSNGLGLEGFVDADWAEDVEDRKSTPGYVFKLNGGGISWCSIGSNSQSHRPVQRQST 1191
            + A E E+ +L +N TWE      LP GRKAI  KW+FK K   +G + RYKARLVA+ F Q  G DF E  APVA+ +++R + S+AA++   L  MDV  A+LN  +EEE+++K P  F   ++    V  L ++LYGLKQS R W  T+D+F+  IG  +  TD C+Y  RDD     + V +YVDDL++A    + +  +K ++S+RF M DLG L   LG+EV RD  +G ++  Q  ++  VL   G  +C+ V  P   G ++ ++    G   + T      R  VG+ MY   GTRPD+A AV   +    DPCP      KR+  YL   P  GI F    +G  L G+ DADWA D+E R+ST GYVF LNGG I+W      S+  R V   ST
Sbjct:   10 KEACESEFESLCKNKTWELVP---LPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVD-AKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKAM--IFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITW-----RSKKQRTVALSST 403          
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 263 bits (672), Expect = 5.290e-77
Identity = 149/383 (38.90%), Postives = 226/383 (59.01%), Query Frame = 1
Query:    7 AMEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKARLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRSLGKSLYGLKQSGRNWINTLDDFLVGIGLERSTTDSCLYSSRDDGGEKDLLVAVYVDDLVIAGRR-EKVDESKHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGFDECRGVPP---YRGKRVQESSRGRSGNSTENRGMVGSFMYASTGTRPDMAYAVHQAAPRTEDPCPEDLST*KRIFCYLSTVPDFGITFGSKSNGLGLEGFVDADWAEDVEDRKSTPGYVFKLNGGGISWCS 1143
            AM++E  +L E+  WE  +   LP  RKA+  KW+FK K   DGS+ R+KARLVAQ F Q  G D+ E  +PV R  ++RTV +L+ +   +L  MDV AA+LN  +E+E+++K P  F    ++      L KSLYGLKQS R W + LD+ L  IG  ++ +D C+Y   +DG     +VA++VDD+++AG+  EK+ + K SI++RF++KD+G L  +LG++V ++  +  +   Q +Y   ++K  G + C+ V        K V         N  E++  VGS +Y S+ TRPD+ +AV+  A  + +P  E  +  KRIF YL    ++G+ +   +N     GF DADWA D+ DRKST GY F++NG  +SW S
Sbjct:  164 AMQQEMDSLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANP-DCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRS 537          
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM)

HSP 1 Score: 267 bits (682), Expect = 2.600e-75
Identity = 158/424 (37.26%), Postives = 239/424 (56.37%), Query Frame = 1
Query:    1 RAAMEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKARLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAPVEEELFVKLPPEFSPFSRDIP-FVRSLGKSLYGLKQSGRNWINTLDDFLVGIGLERSTTDSCLYSSRDDGGEKDLLVAVYVDDLVIAGRREKVDES-KHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGFDECRGVPPYRGKRVQESSRGRSGNSTEN-------------RGMVGSFMYASTGTRPDMAYAVHQAAPRTEDPCPEDLST*KRIFCYLSTVPDFGITFGSKSNGLGLEGFVDADWAEDVEDRKSTPGYVFKLNGGGISWCSIGSNSQSHRPVQRQSTLLQEKRERIRYI 1227
            + A + E  +L++N TW   D   LP GRKAI  +W+F+ K  + G V R+KARLVA+ F Q  G D+ E  APVA+ +++R V SLAA++  +L  MDV  A+LN  ++E++++  P  +     D P  V  L +SLYGLKQS R W  T+DDF++ +G ++  +D C+Y  RD  G+  + VA+YVDDLV+A   +++ ES KH++S+RF M DLG L   LG+E++ D  +G +T  Q  +++ +L   G  + + V     K  Q+     + N  E              R  VG+ MY    TRPD+A AV   +  + DPCP      KR+  YL   P  G+ F S+ + +G+ G+ DADWA D+E R+ST GY F +NGG ISW S    + +    + +   L E  + + ++
Sbjct:  672 KEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEVERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPV-----KTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSVGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEVVWL 1082          
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Match: H3H1B2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1B2_PHYRM)

HSP 1 Score: 252 bits (643), Expect = 1.400e-74
Identity = 151/391 (38.62%), Postives = 224/391 (57.29%), Query Frame = 1
Query:    1 RAAMEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKARLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAPVEEELFVKLPPEFSPFSRDIP-FVRSLGKSLYGLKQSGRNWINTLDDFLVGIGLERSTTDSCLYSSRDDGGEKDLLVAVYVDDLVIAGRREKVD-ESKHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGFDECRGV--PPYRGKRVQESSRGRSGNSTEN------RGMVGSFMYASTGTRPDMAYAVHQAAPRTEDPCPEDLST*KRIFCYLSTVPDFGITFGSKSNGLGLEGFVDADWAEDVEDRKSTPGYVFKLNGGGISWCS 1143
            + A + E  +L++N TW   D   LP GRKAI  +W+F+ K  + G + R+KARLVA+ F Q  G D+ E  APVA+ +++R V SLAA++  +L  MDV  A+LN  ++E++++  P  +     D P  V  L +SLYGLKQS R W  T+DDF++ +G ++  +D C+Y  RD  G   + VA+YVDDLV+A   +K+  ++K ++S RF M D+G L   LG+E+ +D   G ++  Q  + +++L+    D+   V  P   G ++ ++         E       R  VG  MY   GTRPD+A AV   +    DPCP      KR+F Y+      GI F +  +  GL+G+ DADWA D+E R+ST GY F +NGG ISW S
Sbjct:   40 KEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD--GHDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIEFQASCHD-GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRS 422          
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 262 bits (669), Expect = 2.230e-73
Identity = 150/383 (39.16%), Postives = 225/383 (58.75%), Query Frame = 1
Query:    7 AMEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKARLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRSLGKSLYGLKQSGRNWINTLDDFLVGIGLERSTTDSCLYSSRDDGGEKDLLVAVYVDDLVIAGRR-EKVDESKHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGFDECRGVPP---YRGKRVQESSRGRSGNSTENRGMVGSFMYASTGTRPDMAYAVHQAAPRTEDPCPEDLST*KRIFCYLSTVPDFGITFGSKSNGLGLEGFVDADWAEDVEDRKSTPGYVFKLNGGGISWCS 1143
            AM++E  +L E+  WE  +   LP  RKA+  KW+FK K   DGS+ R+KARLVAQ F Q  G D+ E  +PV R   +RTV +L+ +   +L  MDV AA+LN  +E+E+++K P  F    ++   V  L KSLYGLKQS R W + LD+ L  IG  ++ +D C+Y   +DG     +VA++VDD+++AG+  EK+ + K SI++RF++KD+G L  +LG++V ++  +  +   Q +Y   ++K  G + C+ V        K V         N  E +  VGS +Y S+ TRPD+ +AV+  A  + +P  E  +  KRIF YL    ++G+ +   +N     GF DADWA D+ DRKST GY F++NG  +SW S
Sbjct:  778 AMQQEMDSLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEH-LVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANP-DCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRS 1151          
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL)

HSP 1 Score: 262 bits (670), Expect = 2.340e-73
Identity = 160/405 (39.51%), Postives = 225/405 (55.56%), Query Frame = 1
Query:    7 AMEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKARLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAPVEEELFVKLPPEFSPFSRDIP-FVRSLGKSLYGLKQSGRNWINTLDDFLVGIGLERSTTDSCLYSSRDDGGEKDLLVAVYVDDLVIA-GRREKVDESKHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGFDECRGV--PPYRGKRVQES------SRGRSGNSTENRGMVGSFMYASTGTRPDMAYAVHQAAPRTEDPCPEDLST*KRIFCYLSTVPDFGITFGSKSNGLGLEGFVDADWAEDVEDRKSTPGYVFKLNGGGISWCSIGSNSQSHRPVQRQST 1191
            A + E+ +L +N TWE      LP GRKAI  KW+FK K   +G + RYKARLVA+ F Q  G DF E  APVA+ +++R + SLAA++   L  MDV  A+LN  ++EE+++K P  +       P     L ++LYGLKQS R W  T+D+F+  IG  +   D C+Y  R+D     + V +YVDDL++A   ++ +  +K ++S+RF M DLG L   LG+EV+RD  +G ++  Q  +++ VL   G  +C+ V  P   G ++ +S          +      R  VG+ MY   GTRPD+A +V   +    DPCP      KR+  YL   P  GI F   S+G  L G+ DADWA D+E R+ST GYV  LNGG ISW      S+  R V   ST
Sbjct:  882 ACDSEFESLRKNETWELVP---LPQGRKAISSKWVFKVKETAEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFTSIRIILSLAAQYKLVLHQMDVKTAFLNGLLDEEIYMKQPDGY--IDPKYPNHACKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCNMDHCVYVKRNDSAT--MFVVIYVDDLILACNNKDLLAATKRALSERFEMSDLGELKYCLGMEVKRDDKSGDVSMRQTKFVQSVLTKFGMQDCKPVKTPQDPGLKLTKSMCEGGCKHDETMKDVPYRNAVGALMYLMVGTRPDLAASVGTLSQFAADPCPTHWQALKRVLRYLQATPMHGICFSGSSDGE-LIGYSDADWAGDIETRRSTSGYVSVLNGGCISW-----RSKKQRTVALSST 1273          
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 260 bits (664), Expect = 1.340e-72
Identity = 156/407 (38.33%), Postives = 235/407 (57.74%), Query Frame = 1
Query:    1 RAAMEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKARLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAPVEEELFVKLPPEFSPFSRDIP-FVRSLGKSLYGLKQSGRNWINTLDDFLVGIGLERSTTDSCLYSSR---DDGGEKDLLVAVYVDDLV-IAGRREKVDESKHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGFDECRGV--PPYRGKRVQE-SSRGRSGNSTENRGMVGSFMYASTGTRPDMAYAVHQAAPRTEDPCPEDLST*KRIFCYLSTVPDFGITFGSKSNGLGLEGFVDADWAEDVEDRKSTPGYVFKLNGGGISWCSIGSNSQSHRPVQRQSTLL 1197
            + A + E+ AL+ENGTWE   P   P  +  +  +W+FK K K DGSV ++KARLVAQ + Q EG D+ E  +PV R +++R++ +LA   D+E+  MDV  A+L   + +E+++K P  +   S++ P  V  L KSLYGLKQS R W +TLD FL   G ++   DSCLY       +G    ++++++VDD++  +     ++E K +I  +F+++DLG +S +LG+ ++RDR + T+T SQ  Y+  VLK    +EC+ V  P   GK+  E S   R  N  E + ++G   Y +T TRPD+A AV   +     P  E     KRI  Y+    +FGITF +K     L G+ DADWA D E R+ST GY+F+++G  ISWCS   +  S    + +   L
Sbjct:  849 KKATDSEFNALMENGTWELVPP---PDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYR--SKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMAL 1250          
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 247 bits (631), Expect = 1.920e-72
Identity = 154/391 (39.39%), Postives = 221/391 (56.52%), Query Frame = 1
Query:    1 RAAMEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKARLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRSLGKSLYGLKQSGRNWINTLDDFLVGIGLERSTTDSCLYSSRDDGGEKDLLVAVYVDDLVIA-GRREKVDESKHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGFDECRG--VPPYRGKRVQESSRGRSGNSTENRGMVGSFMYASTGTRPDMAYAVHQAAPRTEDPCPEDLST*KRIFCYLSTVPDFGITFGSKSNGLGLEGFVDADWAEDVEDRKSTPGYVFKLNGGGISWCSIGSNSQS 1164
            +AAM++E  +L ENGTW+  D   LP GRKA+  KWIFKRKL EDG+V RYKARLVAQ F Q  G D+ E  APV R  T R + ++A++    ++  DV  AYLN  +EE +F++ PP +   +RD   V SL KSLYGLKQ+G  W    D  L  +  ++S  D CLY  R+  G   L++  YVDD+VIA    E+ +E   ++++ F++  LG +S  LGI++ R+    ++  SQ +YI+++L+  G ++ +    P   G   Q+  +    N+ +   ++GS +Y +  TRPD+A +V         P   D +  KRI  YL    D  +  G     L  E +VDADWA DV+ RKS  GY+F   GG I W   GS  Q+
Sbjct:   10 KAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA--VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVI--YVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKINRNEKGFSL--SQQTYIKQILEQFGMNQAKPSKYPLDPGHIQQKEEQVMLPNNHQYASLIGSLLYVAVNTRPDIAVSVSILGRSVSAPTQADWNEAKRILRYLKLTMDHELVLGQGERNL--EVYVDADWANDVKSRKSNSGYLFLFGGGPICW---GSRKQT 386          
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Match: H3GQK5_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQK5_PHYRM)

HSP 1 Score: 253 bits (647), Expect = 2.190e-71
Identity = 155/407 (38.08%), Postives = 230/407 (56.51%), Query Frame = 1
Query:    1 RAAMEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKARLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAPVEEELFVKLPPEFSPFSRDIP-FVRSLGKSLYGLKQSGRNWINTLDDFLVGIGLERSTTDSCLYSSRDDGGEKDLLVAVYVDDLVIAGRREKVD-ESKHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGFDECRGV--PPYRGKRVQESSRGRSGNSTEN------RGMVGSFMYASTGTRPDMAYAVHQAAPRTEDPCPEDLST*KRIFCYLSTVPDFGITFGSKSNGLGLEGFVDADWAEDVEDRKSTPGYVFKLNGGGISWCSIGSNSQSHRPVQRQST 1191
            + A + E  +L++N TW   D   LP GRKAI  +W+F+ K  + G + R+KARLVA+ F Q  G D+ E  APVA+ +++R V SLAA++  +L  MDV  A+LN  ++E++++  P  +     D P  V  L +SLYGLKQS R W  T+DDF++ +G ++  +D C+Y  RD  G+  + VA+YVDDLV+A   +K+  ++K ++S RF M D+G L   LG+E+ +D   G ++  Q  + +++L+    D+   V  P   G ++ ++         E       R  VG  MY   GTRPD+A AV   +    DPCP      KR+F Y+      GI F +  +  GL+G+ DADWA D+E R+ST GY F +NGG ISW      S+  R V   ST
Sbjct:  435 KEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDEIFAPVAKFTSIRIVLSLAAKYSLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDIIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMMDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIEFQASCHD-GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISW-----RSKKQRTVALSST 828          
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Match: H3H839_PHYRM (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H839_PHYRM)

HSP 1 Score: 253 bits (645), Expect = 4.430e-71
Identity = 155/407 (38.08%), Postives = 229/407 (56.27%), Query Frame = 1
Query:    1 RAAMEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKARLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLNAPVEEELFVKLPPEFSPFSRDIP-FVRSLGKSLYGLKQSGRNWINTLDDFLVGIGLERSTTDSCLYSSRDDGGEKDLLVAVYVDDLVIAGRREKVD-ESKHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGFDECRGV--PPYRGKRVQESSRGRSGNSTEN------RGMVGSFMYASTGTRPDMAYAVHQAAPRTEDPCPEDLST*KRIFCYLSTVPDFGITFGSKSNGLGLEGFVDADWAEDVEDRKSTPGYVFKLNGGGISWCSIGSNSQSHRPVQRQST 1191
            + A + E  +L++N TW   D   LP GRKAI  +W+F+ K  + G + R+KARLVA+ F Q  G D+ E  APVA+ +++R V SLAA++  +L  MDV  A+LN  ++E++++  P  +     D P  V  L +SLYGLKQS R W  T+DDF++ +G ++  +D C+Y  RD  G+  + VA+YVDDLV+A   +K+  ++K ++S RF M D+G L   LG+E+ +D   G ++  Q  + +++L+    D+   V  P   G ++ ++         E       R  VG  MY   GTRPD+A AV   +    DPCP      KR+F Y+      GI   +  N  GL+G+ DADWA D+E R+ST GY F +NGG ISW      S+  R V   ST
Sbjct:  434 KEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD--GQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIESQASCND-GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISW-----RSKKQRTVALSST 827          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34068.9102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YB57_9STRA1.340e-8040.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT5.290e-7738.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H4L3_PHYRM2.600e-7537.26Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
H3H1B2_PHYRM1.400e-7438.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT2.230e-7339.16Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A8K1FHK1_PYTOL2.340e-7339.51Uncharacterized protein n=3 Tax=Pythium oligandrum... [more]
A0A7D9IUY0_PARCT1.340e-7238.33Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A182GIT5_AEDAL1.920e-7239.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GQK5_PHYRM2.190e-7138.08CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H839_PHYRM4.430e-7138.08Integrase catalytic domain-containing protein n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34068contigH-paniculata_contig34068:353..1903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score208.4
Seed ortholog evalue5e-51
Seed eggNOG ortholog15368.BRADI4G26120.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INI6@38820,3M96M@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size1469
Cds size954
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34068.9102.1prot_H-paniculata_contig34068.9102.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34068 859..1894 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.0024726-UTR-H-paniculata_contig34068:352..8581622930052.0024726-UTR-H-paniculata_contig34068:352..858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34068 353..858 -
1691481127.0818644-UTR-H-paniculata_contig34068:352..8581691481127.0818644-UTR-H-paniculata_contig34068:352..858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34068 353..858 -
1622930052.074191-UTR-H-paniculata_contig34068:1894..19031622930052.074191-UTR-H-paniculata_contig34068:1894..1903Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34068 1895..1903 -
1691481127.1109724-UTR-H-paniculata_contig34068:1894..19031691481127.1109724-UTR-H-paniculata_contig34068:1894..1903Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34068 1895..1903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.0407627-CDS-H-paniculata_contig34068:858..10251622930052.0407627-CDS-H-paniculata_contig34068:858..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34068 859..1025 -
1691481127.0939116-CDS-H-paniculata_contig34068:858..10251691481127.0939116-CDS-H-paniculata_contig34068:858..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34068 859..1025 -
1622930052.0548465-CDS-H-paniculata_contig34068:1107..18941622930052.0548465-CDS-H-paniculata_contig34068:1107..1894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34068 1108..1894 -
1691481127.1025424-CDS-H-paniculata_contig34068:1107..18941691481127.1025424-CDS-H-paniculata_contig34068:1107..1894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34068 1108..1894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34068.9102.1

>prot_H-paniculata_contig34068.9102.1 ID=prot_H-paniculata_contig34068.9102.1|Name=mRNA_H-paniculata_contig34068.9102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
MEEEWGALVENGTWESEDPRRLPAGRKAIRKKWIFKRKLKEDGSVARYKA
RLVAQDFFQAEGEDFFEATAPVARMSTLRTVFSLAAEHDFELEGMDVDAA
YLNAPVEEELFVKLPPEFSPFSRDIPFVRSLGKSLYGLKQSGRNWINTLD
DFLVGIGLERSTTDSCLYSSRDDGGEKDLLVAVYVDDLVIAGRREKVDES
KHSISQRFRMKDLGSLSRVLGIEVRRDRPNGTITTSQGSYIREVLKISGF
DECRGVPPYRGKRVQESSRGRSGNSTENRGMVGSFMYASTGTRPDMAYAV
HQAAPRTEDPCPEDLST*
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mRNA from alignment at H-paniculata_contig34068:353..1903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34068.9102.1 ID=mRNA_H-paniculata_contig34068.9102.1|Name=mRNA_H-paniculata_contig34068.9102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1551bp|location=Sequence derived from alignment at H-paniculata_contig34068:353..1903- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGCGGCAATGGAGGAAGAATGGGGGGCGTTGGTGGAAAATGGGACATG GGAAAGCGAAGACCCTAGGAGGTTACCCGCAGGGCGGAAGGCGATTCGTA AGAAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGC TACAAAGCGCGACTGGTGGCTCAAGATTTTTTCCAGGCGGAGGGTGAAGA TTTCTTTGAAGCCACTGCCCCCGTAGCTCGCATGTCTACGTTACGTACTG TTTTTAGCCTGGCCGCAGAACATGATTTCGAATTAGAGGGCATGGACGTA GATGCGGCGTATTTGAACGCTCCGGTAGAAGAAGAGCTGTTTGTTAAGCT ACCCCCCGAGTTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCGCAGCC TGGGTAAAAGCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGATTAAC ACTCTTGACGATTTTCTTGTTGGGATAGGACTCGAGCGTTCCACTACCGA CTCATGTTTGTACTCTTCCCGAGACGATGGGGGAGAGAAAGACCTTCTGG TGGCCGTGTATGTTGACGACCTAGTCATTGCTGGCCGTCGTGAGAAAGTA GACGAGTCCAAACATAGCATAAGTCAGCGTTTTAGGATGAAAGACTTGGG CTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTAATG GTACCATAACCACCTCGCAGGGTAGCTACATCCGTGAGGTACTAAAAATA TCCGGTTTTGACGAGTGTCGAGGAGTACCCCCCTACAGAGGGAAAAGTGA AGCTTTCGGCGCCCGAGTCGGCCGATAAGCCCTCCGAACAGAGGTCACTT GGAGCTGTACTGTCGGACAAAGGCGCAGGAGTACAAGAAAGCAGCAGAGG GAGAAGTGGCAATTCAACTGAAAACAGAGGCATGGTAGGATCATTCATGT ACGCTTCGACAGGAACTAGACCTGATATGGCATACGCGGTACACCAAGCA GCACCTCGTACGGAGGACCCATGTCCAGAAGACTTGAGTACATGAAAGCG CATTTTTTGTTATCTCAGTACTGTGCCTGACTTCGGCATTACGTTCGGCA GTAAGAGTAATGGTCTCGGTCTGGAAGGATTCGTTGATGCTGATTGGGCC GAAGATGTCGAGGACCGAAAGTCCACACCAGGATACGTTTTCAAGCTGAA CGGTGGTGGAATAAGTTGGTGCTCTATAGGAAGCAACAGTCAGTCACATC GTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGAATA CGGTATATCTTAGGGAGTTACTAGGATCGATAGGTTTCTGATGCAGGGGG AGCACGACATTGTTTGAGGACAATAAATCAGCAATTAATATCAGTAAGGG ATCTGGCGCACACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGGAA TTCGAGAGTGGATTCGGGAAGGAATATTGGCATTGAAATACGTGCAGACC GGCGATCAATTTGCTTACATTTTAACGAAAAGACTAAGCAGAGTACAGTT T
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Coding sequence (CDS) from alignment at H-paniculata_contig34068:353..1903-

>mRNA_H-paniculata_contig34068.9102.1 ID=mRNA_H-paniculata_contig34068.9102.1|Name=mRNA_H-paniculata_contig34068.9102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig34068:353..1903- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGGGGGCGTTGGTGGAAAATGGGACATGGGAAAGCGA
AGACCCTAGGAGGTTACCCGCAGGGCGGAAGGCGATTCGTAAGAAATGGA
TTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCG
CGACTGGTGGCTCAAGATTTTTTCCAGGCGGAGGGTGAAGATTTCTTTGA
AGCCACTGCCCCCGTAGCTCGCATGTCTACGTTACGTACTGTTTTTAGCC
TGGCCGCAGAACATGATTTCGAATTAGAGGGCATGGACGTAGATGCGGCG
TATTTGAACGCTCCGGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGA
GTTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCGCAGCCTGGGTAAAA
GCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGATTAACACTCTTGAC
GATTTTCTTGTTGGGATAGGACTCGAGCGTTCCACTACCGACTCATGTTT
GTACTCTTCCCGAGACGATGGGGGAGAGAAAGACCTTCTGGTGGCCGTGT
ATGTTGACGACCTAGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTCC
AAACATAGCATAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTC
GCGCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACCATAA
CCACCTCGCAGGGTAGCTACATCCGTGAGGTACTAAAAATATCCGGTTTT
GACGAGTGTCGAGGAGTACCCCCCTACAGAGGGAAAAATGGAGGAAGAAT
GGGGGGCGTTGGTGGAAAATGGGACATGGGAAAGCGAAGACCCTAGGAGG
TTACCCGCAGGGCGGAAGGCGATTCGTAAGAAATGGATTTTCAAGCGGAA
ACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTC
AAGATTTTTTCCAGGCGGAGGGTGAAGATTTCTTTGAAGCCACTGCCCCC
GTAGCTCGCATGTCTACGTTACGTACTGTTTTTAGCCTGGCCGCAGAACA
TGATTTCGAATTAGAGGGCATGGACGTAGATGCGGCGTATTTGAACGCTC
CGGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCCCCTTTC
TCCCGAGACATACCGTTTGTGCGCAGCCTGGGTAAAAGCCTGTACGGCCT
CAAGCAGAGCGGCCGAAACTGGATTAACACTCTTGACGATTTTCTTGTTG
GGATAGGACTCGAGCGTTCCACTACCGACTCATGTTTGTACTCTTCCCGA
GACGATGGGGGAGAGAAAGACCTTCTGGTGGCCGTGTATGTTGACGACCT
AGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTCCAAACATAGCATAA
GTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGA
ATAGAAGTACGACGTGACCGCCCTAATGGTACCATAACCACCTCGCAGGG
TAGCTACATCCGTGAGGTACTAAAAATATCCGGTTTTGACGAGTGTCGAG
GAGTACCCCCCTACAGAGGGAAAAGAGTACAAGAAAGCAGCAGAGGGAGA
AGTGGCAATTCAACTGAAAACAGAGGCATGGTAGGATCATTCATGTACGC
TTCGACAGGAACTAGACCTGATATGGCATACGCGGTACACCAAGCAGCAC
CTCGTACGGAGGACCCATGTCCAGAAGACTTGAGTACATGAGAGTACAAG
AAAGCAGCAGAGGGAGAAGTGGCAATTCAACTGAAAACAGAGGCATGGTA
GGATCATTCATGTACGCTTCGACAGGAACTAGACCTGATATGGCATACGC
GGTACACCAAGCAGCACCTCGTACGGAGGACCCATGTCCAGAAGACTTGA
GTACATGA
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