mRNA_H-paniculata_contig34062.9101.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34062.9101.1
Unique NamemRNA_H-paniculata_contig34062.9101.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34062.9101.1 vs. uniprot
Match: D8LTQ2_ECTSI (Putative phospholipase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTQ2_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 4.460e-11
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   10 YGGHVNSRQKVRLGNALPGAGIAVVLIDLPGHGYSQGERAYINSYTHWIDD 162
            YG H NS +K ++G ++P  G+ +  +DL GHGYS GERAYI  Y HW+DD
Sbjct:  113 YGAHCNSPRKHQMGMSMPEKGLCMYQMDLEGHGYSGGERAYIEDYNHWVDD 163
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BLAST of mRNA_H-paniculata_contig34062.9101.1 vs. uniprot
Match: A0A836C8U6_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8U6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.660e-10
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 YVSYGGHVNSRQKVRLGNALPGAGIAVVLIDLPGHGYSQGERAYINSYTHWIDD 162
            +  YGGH +   K+  G  L   G+AVV+ DL GHGYS+G RAY+NS+ HWIDD
Sbjct:   15 FHGYGGHNSYISKLWYGKYLSERGMAVVMPDLVGHGYSEGTRAYVNSWQHWIDD 68
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BLAST of mRNA_H-paniculata_contig34062.9101.1 vs. uniprot
Match: A0A7S2UYI4_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYI4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.740e-10
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   10 YGGHVNSRQKVRLGNALPGAGIAVVLIDLPGHGYSQGERAYINSYTHWIDD 162
            YGGH+N  +   LG ++   G+A++ +DL GHGYS+GERAY+  + H++DD
Sbjct:   49 YGGHINDPKGTTLGESMSKKGLAIITMDLHGHGYSEGERAYLEDWNHFVDD 99
[Close]
BLAST of mRNA_H-paniculata_contig34062.9101.1 vs. uniprot
Match: D8LIE5_ECTSI (Putative phospholipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE5_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.250e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   70 GIAVVLIDLPGHGYSQGERAYINSYTHWIDD 162
            GIA V +DLPGHGYS+GERAY   Y+HW+DD
Sbjct:    5 GIANVQLDLPGHGYSEGERAYATHYSHWVDD 35
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34062.9101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTQ2_ECTSI4.460e-1152.94Putative phospholipase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A836C8U6_9STRA2.660e-1053.70Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A7S2UYI4_9STRA3.740e-1047.06Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
D8LIE5_ECTSI1.250e-770.97Putative phospholipase n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34062contigH-paniculata_contig34062:330..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog2880.D8LTQ2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.acylglycerol lipase activity
EggNOG OGsCOG2267@1,KOG1455@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.9145913-CDS-H-paniculata_contig34062:329..4911622930051.9145913-CDS-H-paniculata_contig34062:329..491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34062 330..491 -
1691481127.0718365-CDS-H-paniculata_contig34062:329..4911691481127.0718365-CDS-H-paniculata_contig34062:329..491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34062 330..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34062.9101.1prot_H-paniculata_contig34062.9101.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34062 330..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34062.9101.1

>prot_H-paniculata_contig34062.9101.1 ID=prot_H-paniculata_contig34062.9101.1|Name=mRNA_H-paniculata_contig34062.9101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
YVSYGGHVNSRQKVRLGNALPGAGIAVVLIDLPGHGYSQGERAYINSYTH
WIDD
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mRNA from alignment at H-paniculata_contig34062:330..491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34062.9101.1 ID=mRNA_H-paniculata_contig34062.9101.1|Name=mRNA_H-paniculata_contig34062.9101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig34062:330..491- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGTCAGCTATGGCGGCCACGTGAACAGTCGTCAAAAGGTAAGATTGGG
GAATGCATTGCCAGGTGCTGGGATTGCAGTGGTGCTGATCGACCTTCCGG
GACATGGTTACTCACAGGGCGAGCGTGCCTACATCAACAGCTATACCCAC
TGGATAGATGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig34062:330..491-

>mRNA_H-paniculata_contig34062.9101.1 ID=mRNA_H-paniculata_contig34062.9101.1|Name=mRNA_H-paniculata_contig34062.9101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig34062:330..491- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGTCAGCTATGGCGGCCACGTGAACAGTCGTCAAAAGGTAAGATTGGG
GAATGCATTGCCAGGTGCTGGGATTGCAGTGGTGCTGATCGACCTTCCGG
GACATGGTTACTCACAGGGCGAGCGTGCCTACATCAACAGCTATACCCAC
TGGATAGATGACTATGTCAGCTATGGCGGCCACGTGAACAGTCGTCAAAA
GGTAAGATTGGGGAATGCATTGCCAGGTGCTGGGATTGCAGTGGTGCTGA
TCGACCTTCCGGGACATGGTTACTCACAGGGCGAGCGTGCCTACATCAAC
AGCTATACCCACTGGATAGATGAC
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