mRNA_H-paniculata_contig34056.9100.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34056.9100.1
Unique NamemRNA_H-paniculata_contig34056.9100.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34056.9100.1 vs. uniprot
Match: A0A6H5JP76_9PHAE (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP76_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.090e-20
Identity = 39/62 (62.90%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:   22 KAAVKPLITKLMRMQW-TGWKNPFSTVLTRHNAPPRYFDIIVRPMNLTYVRDNVNRNKYSTV 204
            K+ VKPLI++L+ M+W +GW NPF+TV  + NAPPRYF+ I RPMNLT++RDN+N+NKY+TV
Sbjct:  175 KSLVKPLISRLVAMKWPSGWGNPFTTVFKKSNAPPRYFEFIKRPMNLTFIRDNLNKNKYTTV 236
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BLAST of mRNA_H-paniculata_contig34056.9100.1 vs. uniprot
Match: A0A8K1CEI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEI2_PYTOL)

HSP 1 Score: 50.8 bits (120), Expect = 1.100e-5
Identity = 24/72 (33.33%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:   19 IKAAVKPLITKLMRMQWTGW------KNPFSTVLTRHNAP----PRYFDIIVRPMNLTYVRDNVNRNKYSTV 204
            ++  + PLIT+L  + W+GW       NPF   +T+ N      P YFD +  PM+LT +++ V + +YS +
Sbjct:  169 LQKVLAPLITELRSLTWSGWIVSGKPGNPFIQKITKDNCRRLGVPNYFDFVREPMDLTRIKEKVEKAEYSRI 240
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BLAST of mRNA_H-paniculata_contig34056.9100.1 vs. uniprot
Match: A0A5D6YD80_9STRA (Bromo domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD80_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.510e-5
Identity = 24/72 (33.33%), Postives = 39/72 (54.17%), Query Frame = 1 
Query:   19 IKAAVKPLITKLMRMQWTGW------KNPFSTVLTRHNAP----PRYFDIIVRPMNLTYVRDNVNRNKYSTV 204
            ++  + PL+T+L  + W GW       NPF   +TR N      P YFD +  PM+LT +++ V + +Y+ V
Sbjct:  167 LQTLLAPLVTELRGLTWAGWIVSGKAANPFIQKITRENCKRLGVPNYFDYVKEPMDLTRMKEKVEKAEYARV 238
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BLAST of mRNA_H-paniculata_contig34056.9100.1 vs. uniprot
Match: A0A1Z5KQ91_FISSO (Bromo domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ91_FISSO)

HSP 1 Score: 50.1 bits (118), Expect = 2.080e-5
Identity = 26/62 (41.94%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:   37 PLITKLMRMQWT--GWKNPFSTVLTRHNAP----PRYFDIIVRPMNLTYVRDNVNRNKYSTV 204
            P+  KL  M++   G  NPF  V+ R N      P YFDII +PMNLTY++  V   KY ++
Sbjct:  202 PIFKKLWEMEFAHLGGINPFRVVIDRENCASVGAPDYFDIIEKPMNLTYIQQKVEGRKYESL 263
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BLAST of mRNA_H-paniculata_contig34056.9100.1 vs. uniprot
Match: A0A3F2RFR5_9STRA (Bromo domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RFR5_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.820e-5
Identity = 24/72 (33.33%), Postives = 38/72 (52.78%), Query Frame = 1 
Query:   19 IKAAVKPLITKLMRMQWTGWK------NPFSTVLTRHNAP----PRYFDIIVRPMNLTYVRDNVNRNKYSTV 204
            ++  + PL+T+L  + W GW       NPF    T+ N      P YFD +  PM+LT +++ V R +YS +
Sbjct:  151 LQKLLAPLVTELRGLTWAGWVVSGKPGNPFLQKFTKDNCKRLGVPNYFDYVKNPMDLTRMKEKVERAEYSKI 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34056.9100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JP76_9PHAE1.090e-2062.90Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A8K1CEI2_PYTOL1.100e-533.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YD80_9STRA1.510e-533.33Bromo domain-containing protein n=1 Tax=Pythium br... [more]
A0A1Z5KQ91_FISSO2.080e-541.94Bromo domain-containing protein n=1 Tax=Fistulifer... [more]
A0A3F2RFR5_9STRA3.820e-533.33Bromo domain-containing protein n=2 Tax=Phytophtho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34056contigH-paniculata_contig34056:495..698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D7FUU3
KEGG koko:K10523
KEGG Pathwayko04340,ko04341,map04340,map04341
KEGG ModuleM00384
Hectar predicted targeting categorymitochondrion
GOsGO:0000151,GO:0000302,GO:0001101,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0006355,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007623,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009553,GO:0009555,GO:0009611,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009723,GO:0009725,GO:0009733,GO:0009734,GO:0009737,GO:0009738,GO:0009739,GO:0009743,GO:0009751,GO:0009753,GO:0009755,GO:0009756,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010167,GO:0010182,GO:0010200,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0014070,GO:0016020,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0023052,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031461,GO:0031625,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033993,GO:0042221,GO:0042493,GO:0042542,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046677,GO:0048229,GO:0048511,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051246,GO:0051252,GO:0051338,GO:0051347,GO:0051603,GO:0051716,GO:0051972,GO:0051973,GO:0060255,GO:0065007,GO:0065009,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071322,GO:0071365,GO:0071396,GO:0071495,GO:0071704,GO:0080090,GO:0097305,GO:0097306,GO:0098588,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2000278,GO:2000573,GO:2001141
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1778@2759
Ec32 ortholog descriptionBromodomain protein
Ec32 orthologEc-06_001120.1
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.7919016-CDS-H-paniculata_contig34056:494..6981622930051.7919016-CDS-H-paniculata_contig34056:494..698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34056 495..698 -
1691481127.0612884-CDS-H-paniculata_contig34056:494..6981691481127.0612884-CDS-H-paniculata_contig34056:494..698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34056 495..698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34056.9100.1prot_H-paniculata_contig34056.9100.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34056 495..698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34056.9100.1

>prot_H-paniculata_contig34056.9100.1 ID=prot_H-paniculata_contig34056.9100.1|Name=mRNA_H-paniculata_contig34056.9100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
RSTAISIKAAVKPLITKLMRMQWTGWKNPFSTVLTRHNAPPRYFDIIVRP
MNLTYVRDNVNRNKYSTV
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mRNA from alignment at H-paniculata_contig34056:495..698-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34056.9100.1 ID=mRNA_H-paniculata_contig34056.9100.1|Name=mRNA_H-paniculata_contig34056.9100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig34056:495..698- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCGACGGCAATATCGATAAAGGCGGCCGTCAAGCCGCTGATCACCAA
GCTCATGCGCATGCAGTGGACTGGCTGGAAAAATCCCTTTAGTACCGTAC
TCACCAGACACAACGCTCCGCCCAGGTACTTCGATATCATCGTTCGACCT
ATGAACCTGACGTACGTTCGAGACAACGTCAACAGGAACAAATATTCGAC
GGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig34056:495..698-

>mRNA_H-paniculata_contig34056.9100.1 ID=mRNA_H-paniculata_contig34056.9100.1|Name=mRNA_H-paniculata_contig34056.9100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig34056:495..698- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCGACGGCAATATCGATAAAGGCGGCCGTCAAGCCGCTGATCACCAA
GCTCATGCGCATGCAGTGGACTGGCTGGAAAAATCCCTTTAGTACCGTAC
TCACCAGACACAACGCTCCGCCCAGGTACTTCGATATCATCGTTCGACCT
ATGAACCTGACGTACGTTCGAGACAACGTCAACAGGAACAAATATTCGAC
GGTGAGGTCGACGGCAATATCGATAAAGGCGGCCGTCAAGCCGCTGATCA
CCAAGCTCATGCGCATGCAGTGGACTGGCTGGAAAAATCCCTTTAGTACC
GTACTCACCAGACACAACGCTCCGCCCAGGTACTTCGATATCATCGTTCG
ACCTATGAACCTGACGTACGTTCGAGACAACGTCAACAGGAACAAATATT
CGACGGTG
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