mRNA_H-paniculata_contig34049.9097.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34049.9097.1
Unique NamemRNA_H-paniculata_contig34049.9097.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 181 bits (459), Expect = 1.350e-44
Identity = 103/251 (41.04%), Postives = 147/251 (58.57%), Query Frame = 1
Query:    1 CSACERGKASKQPIKKSPEEQTAERLEPVHTDIAGPV-DKSFEGRRFAIIFVNGYSRMRKVYALRHKSEAL*PLKQFEWDIAKENGLQIKRPRSDHGGEFTGEAFRQFSAENGIKEDFSAAYTPQQYGVAERSWRSVFEMAPSKM-----PIANMTEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLRVFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLSRNMRFDE 735
            C  C RGK +++ I K    + +  L+ VHTDI GP+   S  G+R+ I F++ YSR    + L  KSEAL   K+F+    +E GL +   RSD GGE+   AF+ +  ENGIK   +AAYTPQQ G+AER  RS+  MA   M     P     EA + AV+ LNR+P          E+W    P ++ +RVFGC AY +   ++R KLD+K+   VF+G  +++++YR YNPE K + +SR++RFDE
Sbjct:  474 CDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724          
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Match: UPI000A29CC5E (uncharacterized protein LOC110224828 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29CC5E)

HSP 1 Score: 177 bits (450), Expect = 1.360e-43
Identity = 99/251 (39.44%), Postives = 143/251 (56.97%), Query Frame = 1
Query:    1 CSACERGKASKQPIKKSPEEQTAERLEPVHTDIAGPVD-KSFEGRRFAIIFVNGYSRMRKVYALRHKSEAL*PLKQFEWDIAKENGLQIKRPRSDHGGEFTGEAFRQFSAENGIKEDFSAAYTPQQYGVAERSWRSVFEMAPS-----KMPIANMTEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLRVFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLSRNMRFDE 735
            C  C  GK  K    K    +  + LE +HTD+ GP+  KS     + ++F++ +SR   VY L+ KSE     K+F+  + KE+GL IK  RSD GGEFT + F ++  +NGI+   +   +PQQ GVAER  R++ EMA S     ++P     EA   AVY LNR+P +  +G    E W G  P +  LRVFG  A+     ++R KLDDK+   +F+GYD +++ Y+ YNP+ K   +SRN+ FDE
Sbjct:  501 CEGCLLGKQFKMSFPKESSTRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNVVFDE 751          
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein n=6 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9M197_ARATH)

HSP 1 Score: 176 bits (446), Expect = 6.140e-43
Identity = 98/251 (39.04%), Postives = 142/251 (56.57%), Query Frame = 1
Query:    1 CSACERGKASKQPIKKSPEEQTAERLEPVHTDIAGPVD-KSFEGRRFAIIFVNGYSRMRKVYALRHKSEAL*PLKQFEWDIAKENGLQIKRPRSDHGGEFTGEAFRQFSAENGIKEDFSAAYTPQQYGVAERSWRSVFEMAPS-----KMPIANMTEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLRVFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLSRNMRFDE 735
            C  C  G   K    K    +  + LE +HTD+ GP+  KS     + ++F++ +SR   VY L+ KSE     K+F+  + KE+GL IK  RSD GGEFT + F ++  +NGI+   +   +PQQ GVAER  R++ EMA S     ++P     EA   AVY LNR+P +  +G    E W G  P +  LRVFG  A+     ++R KLDDK+   +F+GYD +++ Y+ YNP+ K   +SRN+ FDE
Sbjct:  502 CEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDE 752          
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Match: V9H0W6_ARATH (Lectin receptor kinase (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=V9H0W6_ARATH)

HSP 1 Score: 171 bits (434), Expect = 1.940e-42
Identity = 92/226 (40.71%), Postives = 135/226 (59.73%), Query Frame = 1
Query:   76 LEPVHTDIAGPVD-KSFEGRRFAIIFVNGYSRMRKVYALRHKSEAL*PLKQFEWDIAKENGLQIKRPRSDHGGEFTGEAFRQFSAENGIKEDFSAAYTPQQYGVAERSWRSVFEMAPS-----KMPIANMTEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLRVFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLSRNMRFDE 735
            +E +HTD+ GP+  KS     + ++F++ +SR   VY L+ KSE     K+F+  + KE+GL IK  RSD GGEFT + F ++  +NGI+   +   +PQQ GVAER  R++ EMA S     ++P     EA   AVY LNR+P +  +G    E W G  P +  LRVFG  A+     ++R KLDDK+   +F+GYD +++ Y+ YNP+ K   +SRN+ FDE
Sbjct:   24 VELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDE 249          
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Match: A0A2Z6P2A8_TRISU (Uncharacterized protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P2A8_TRISU)

HSP 1 Score: 172 bits (437), Expect = 8.880e-42
Identity = 99/251 (39.44%), Postives = 143/251 (56.97%), Query Frame = 1
Query:    1 CSACERGKASKQPIKKSPEEQTAERLEPVHTDIAGPVDK-SFEGRRFAIIFVNGYSRMRKVYALRHKSEAL*PLKQFEWDIAKENGLQIKRPRSDHGGEFTGEAFRQFSAENGIKEDFSAAYTPQQYGVAERSWRSVFEM-----APSKMPIANMTEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLRVFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLSRNMRFDE 735
            C+ C RGK  ++ I K+   ++++RLE +H+DI GP+   S   +R+ + F++ YSR   VY L +KS+A    K+F+  + KE    I   R+D GGEF  + F++F   NGIK   +AAYTPQQ G+AER  R++ EM     A   +P A   EA   A+Y LNR+P          E W  T P +   ++FGC AY      QR+KLDDK+   VF G  E+ ++YR YNP  K +  SR+++F E
Sbjct:  459 CADCLRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFIDDYSRKIWVYYLSNKSDAFECFKKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGIKRQLTAAYTPQQNGIAERKNRTIMEMIRCMLAGKSVPKAFWPEAVNWAIYVLNRSPTAAIKDMTPEEVWSSTKPSVKHFKIFGCIAYAHAPDAQRKKLDDKSVKCVFFGISEETKAYRLYNPITKRIIFSRDVKFVE 709          
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Match: A0A5C7H2W6_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7H2W6_9ROSI)

HSP 1 Score: 169 bits (429), Expect = 9.830e-42
Identity = 100/251 (39.84%), Postives = 141/251 (56.18%), Query Frame = 1
Query:    1 CSACERGKASKQPIKKSPEEQTAERLEPVHTDIAGPVDKSFEGR-RFAIIFVNGYSRMRKVYALRHKSEAL*PLKQFEWDIAKENGLQIKRPRSDHGGEFTGEAFRQFSAENGIKEDFSAAYTPQQYGVAERSWRSVFEMAPS-----KMPIANMTEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLRVFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLSRNMRFDE 735
            C+ C  GK  + PI K    + +++L+ +H DI GP+  +   + R+ I F++ +SR   VY L  KSEAL   K F+  + KE    IK  R+D GGEFT + F +F  ENGIK   +AAYTPQQ GVAER  R++  +  S     K+P     EA    VY LNR+P  +       E W G  P ++  RVFGC A+V     +R KL+DK+   V LG  E++++YR YNP  K +  SR++ F+E
Sbjct:  142 CTDCMIGKQHRDPIPKRSTWRASQKLQLIHADICGPISPTSNSKKRYLICFIDDFSRKTWVYFLVEKSEALVTFKHFKKYVEKEMDACIKCLRTDRGGEFTSQDFNEFCKENGIKRQLTAAYTPQQNGVAERKNRTIMNLVRSMLSEKKIPKTFWPEAVNWTVYILNRSPTLVVKNITPEEAWSGIKPSVEHFRVFGCLAHVHVPDAKRTKLEDKSIACVLLGVSEESKAYRLYNPIAKKIITSRDVVFEE 392          
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU)

HSP 1 Score: 172 bits (437), Expect = 1.070e-41
Identity = 101/251 (40.24%), Postives = 141/251 (56.18%), Query Frame = 1
Query:    1 CSACERGKASKQPIKKSPEEQTAERLEPVHTDIAGPVDKSFEG-RRFAIIFVNGYSRMRKVYALRHKSEAL*PLKQFEWDIAKENGLQIKRPRSDHGGEFTGEAFRQFSAENGIKEDFSAAYTPQQYGVAERSWRSVFEMAPSKMPIANM-----TEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLRVFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLSRNMRFDE 735
            C+ C +GK  +  I +    + +E+LE VH DI GP+    EG +R+ I F++ YSR   VY L +KS+A    K F+  + KE GL IK  R+D GGEFT   F+++   NGIK   + AYTPQQ GVAER  R+V  M  S +   N+      EA   A Y LNR P          E W+G  P +  LRVFGC AY      +R KL+DK+   V  G  E++++YR Y+P +K + +SR++ F+E
Sbjct:  467 CTNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEE 717          
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Match: A0A2N9HR09_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HR09_FAGSY)

HSP 1 Score: 171 bits (434), Expect = 2.330e-41
Identity = 98/251 (39.04%), Postives = 138/251 (54.98%), Query Frame = 1
Query:    1 CSACERGKASKQPIKKSPEEQTAERLEPVHTDIAGPVDKSFEGRR-FAIIFVNGYSRMRKVYALRHKSEAL*PLKQFEWDIAKENGLQIKRPRSDHGGEFTGEAFRQFSAENGIKEDFSAAYTPQQYGVAERSWRSVFEMAPS-----KMPIANMTEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLRVFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLSRNMRFDE 735
            C  C  GK S++   K    +  + L+ VH D+ GP+  S  G+  + ++F++ +SR   +Y L+ KSE     K+F+  + K++  +IK  RSD GGEFT   F++F   NGI+   +   +PQQ GVAER  RS+  MA S     KMP     EA   AVY  NR P R   G    + W    P +  LRVFG  AY+    Q+R KLDDK+   VF+GYD  ++ Y+ YNP  K V +SR++ FDE
Sbjct:  488 CEGCLFGKQSRKSFPKEASTRANKPLQLVHADVCGPIKPSSLGKNNYFLLFIDDFSRKTWIYFLKQKSEVFGAFKKFKAFVEKQSDQEIKALRSDRGGEFTSNEFKEFCETNGIRRPLTVPRSPQQNGVAERKNRSILNMARSMLKSKKMPKELWAEAVNCAVYLSNRCPTRSVQGKTPQQAWSRKKPTVSHLRVFGSIAYMHVPDQERSKLDDKSEKYVFIGYDPSSKGYKLYNPSTKKVIVSRDVEFDE 738          
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Match: A0A392M335_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M335_9FABA)

HSP 1 Score: 166 bits (421), Expect = 3.760e-41
Identity = 96/251 (38.25%), Postives = 139/251 (55.38%), Query Frame = 1
Query:    1 CSACERGKASKQPIKKSPEEQTAERLEPVHTDIAGPVDKSFEG-RRFAIIFVNGYSRMRKVYALRHKSEAL*PLKQFEWDIAKENGLQIKRPRSDHGGEFTGEAFRQFSAENGIKEDFSAAYTPQQYGVAERSWRSVFEMAPSK-----MPIANMTEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLRVFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLSRNMRFDE 735
            CS C  GK  ++ I K+   ++A +LE +H+DI GP+  +  G +R+ + F++ +SR   VY L+ KS A    K+F   + KE G  I   R+D GGEF    F+ +  ENGIK   +AAYTPQQ G+AER  R++ EM  S      MP     EA   ++Y LNR+P          E W G    +   ++FGC AY       RRKLDDK+   +FLG  E++++YR YNP  + + +SR++ F E
Sbjct:  199 CSDCLTGKQHRESIPKTSNWKSARKLELIHSDICGPISPASNGNKRYLLTFIDDFSRKAWVYFLKDKSSAFDYFKKFRTMVEKECGEAIVCLRTDRGGEFNSHEFKDYCEENGIKRQLTAAYTPQQNGIAERKNRTIMEMVRSMLAGKDMPKMFWPEAVNWSIYVLNRSPAAALLDVTPEEAWSGIKSSVKHFKIFGCIAYSHVPDAHRRKLDDKSVKCIFLGISEESKAYRLYNPTTQKIVISRDVVFAE 449          
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Match: A0A2N9IUL9_FAGSY (Uncharacterized protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUL9_FAGSY)

HSP 1 Score: 171 bits (432), Expect = 3.990e-41
Identity = 98/251 (39.04%), Postives = 138/251 (54.98%), Query Frame = 1
Query:    1 CSACERGKASKQPIKKSPEEQTAERLEPVHTDIAGPVDKSFEGRR-FAIIFVNGYSRMRKVYALRHKSEAL*PLKQFEWDIAKENGLQIKRPRSDHGGEFTGEAFRQFSAENGIKEDFSAAYTPQQYGVAERSWRSVFEMAPS-----KMPIANMTEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLRVFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLSRNMRFDE 735
            C  C  GK S++   K    +  + L+ VH D+ GP+  S  G+  + ++F++ +SR   +Y L+ KSE     K+F+  + K++  +IK  RSD GGEFT   F++F   NGI+   +   +PQQ GVAER  RS+  MA S     KMP     EA   AVY  NR P R   G    + W    P +  LRVFG  AY+    Q+R KLDDK+   VF+GYD  ++ Y+ YNP  K V +SR++ FDE
Sbjct:  510 CEGCLFGKQSRKSFPKEASTRANKPLQLVHADVCGPIKPSSLGKNNYFLLFIDDFSRKTWIYFLKQKSEVFGAFKKFKAFVEKQSDQEIKALRSDRGGEFTSNEFKEFCETNGIRRPLTVPRSPQQNGVAERKNRSILNMARSMLKSKKMPKELWAEAVDCAVYLSNRCPTRSVQGKTPQQAWSRKKPTVSHLRVFGSIAYMHVPDQERSKLDDKSEKYVFIGYDPSSKGYKLYNPSTKKVIVSRDVEFDE 760          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34049.9097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2IM54_9BRAS1.350e-4441.04Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
UPI000A29CC5E1.360e-4339.44uncharacterized protein LOC110224828 n=1 Tax=Arabi... [more]
Q9M197_ARATH6.140e-4339.04Copia-type reverse transcriptase-like protein n=6 ... [more]
V9H0W6_ARATH1.940e-4240.71Lectin receptor kinase (Fragment) n=1 Tax=Arabidop... [more]
A0A2Z6P2A8_TRISU8.880e-4239.44Uncharacterized protein n=2 Tax=Trifolium subterra... [more]
A0A5C7H2W6_9ROSI9.830e-4239.84Integrase catalytic domain-containing protein n=2 ... [more]
A0A2Z6P4L8_TRISU1.070e-4140.24Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2N9HR09_FAGSY2.330e-4139.04Integrase catalytic domain-containing protein n=4 ... [more]
A0A392M335_9FABA3.760e-4138.25Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A2N9IUL9_FAGSY3.990e-4139.04Uncharacterized protein n=6 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34049contigH-paniculata_contig34049:379..2367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.7
Seed ortholog evalue5.6e-16
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons4
Model size1778
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34049.9097.1prot_H-paniculata_contig34049.9097.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34049 1086..1953 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.176242-UTR-H-paniculata_contig34049:378..4641622930051.176242-UTR-H-paniculata_contig34049:378..464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34049 379..464 -
1691481126.730984-UTR-H-paniculata_contig34049:378..4641691481126.730984-UTR-H-paniculata_contig34049:378..464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34049 379..464 -
1622930051.1920812-UTR-H-paniculata_contig34049:596..10851622930051.1920812-UTR-H-paniculata_contig34049:596..1085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34049 597..1085 -
1691481126.744838-UTR-H-paniculata_contig34049:596..10851691481126.744838-UTR-H-paniculata_contig34049:596..1085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34049 597..1085 -
1622930051.2526643-UTR-H-paniculata_contig34049:1953..23671622930051.2526643-UTR-H-paniculata_contig34049:1953..2367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34049 1954..2367 -
1691481126.7879767-UTR-H-paniculata_contig34049:1953..23671691481126.7879767-UTR-H-paniculata_contig34049:1953..2367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34049 1954..2367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.205564-CDS-H-paniculata_contig34049:1085..15471622930051.205564-CDS-H-paniculata_contig34049:1085..1547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34049 1086..1547 -
1691481126.7541084-CDS-H-paniculata_contig34049:1085..15471691481126.7541084-CDS-H-paniculata_contig34049:1085..1547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34049 1086..1547 -
1622930051.2217453-CDS-H-paniculata_contig34049:1611..19041622930051.2217453-CDS-H-paniculata_contig34049:1611..1904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34049 1612..1904 -
1691481126.7658665-CDS-H-paniculata_contig34049:1611..19041691481126.7658665-CDS-H-paniculata_contig34049:1611..1904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34049 1612..1904 -
1622930051.2333708-CDS-H-paniculata_contig34049:1919..19531622930051.2333708-CDS-H-paniculata_contig34049:1919..1953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34049 1920..1953 -
1691481126.7796028-CDS-H-paniculata_contig34049:1919..19531691481126.7796028-CDS-H-paniculata_contig34049:1919..1953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34049 1920..1953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34049.9097.1

>prot_H-paniculata_contig34049.9097.1 ID=prot_H-paniculata_contig34049.9097.1|Name=mRNA_H-paniculata_contig34049.9097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
MAPSKMPIANMTEAARAAVYYLNRAPMRLHNGGALYEKWHGTIPKLDDLR
VFGCTAYVMFQSQQRRKLDDKAWFGVFLGYDEDNRSYRTYNPENKSVQLS
RNMRFDEGFHRRSHQRSRDPAIPRPRRARSVTNTEDQTPASQMSPILPIY
SLPAASANPFSVLSDDDDDESKSDSKMKDVEPAVEDAPSAGTAAPASQGN
TTKQSGTEAQRPRDRSPIGERARASENREEDPCATARVAKVEGTGNLTGA
VSEGSRNPRQKH*
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mRNA from alignment at H-paniculata_contig34049:379..2367-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34049.9097.1 ID=mRNA_H-paniculata_contig34049.9097.1|Name=mRNA_H-paniculata_contig34049.9097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1989bp|location=Sequence derived from alignment at H-paniculata_contig34049:379..2367- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTCAGCGTGTGAGCGAGGGAAGGCATCGAAGCAACCAATAAAAAAGTC TCCGGAAGAGCAGACAGCGGAGCGACTGGAGCCAGTGCATACTGACATCG CAGGACCGGTAGACAAATCTTTCGAGGGACGCCGTTTCGCCATTATCTTC GTGAACGGCTACAGTCGAATGCGTAAGGTCTACGCCCTGAGACACAAATC AGAGGCGTTATGACCTCTGAAACAGTTCGAGTGGGACATCGCGAAGGAAA ACGGGCTACAGATAAAACGTCCTCGGTCAGATCATGGAGGAGAGTTTACA GGAGAAGCGTTCCGACAGTTTAGTGCGGAAAATGGCATCAAGGAAGACTT TTCTGCCGCCTACACGCCCCAGCAATACGGTGTGGCGGAGCGCAGCTGGC GTAGCGTTTTCGAGATGGCCCCAAGTAAGATGCCGATCGCCAACATGAGT CGCAGGTATTGAGCGGAGGCGGCGCGCGCGGCTGTGTACTACTTGAATCG TGCCCCGATGCGACTGCACAACGGAGGGGCGCTGTATGAGAAATGGCACG GCACGATACCAAAGCTTGACGACCTTCGTGTGTTCGGCTGCACGGCGTAC GTGATGTTCCAATCGCAGCAGAGACGCAAACTCGATGACAAAGCATGGTT CGGGGTGTTTCTGGGGTACGACGAAGACAACCGGAGTTATCGCACATATA ACCCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACATGAGATTTGATGAG GGTTTCGTAATCGGTCATCGCGGACAGCTGGATCACGACGGGACGCGATA TATGGAAGGCCTGTTTTCAGCACCGTCGGTCACACCAGCGGTCACGCGAT CCCGCGATCCCGCGCCCGAGGCGAGCAAGAAGCGTAACAAACACGGAAGA CCAGACGCCGGCGTCACAAATGTCGCCCATATTGCCGATATATTCGCTGC CAGCCGCCAGCGCAAACCCATTCAGTGTCTTGAGCGATGACGATGATGAC GAAAGTAAAAGCGACTCCAAGATGAAGGATGTGGAGCCCGCAGTCGAAGA CGCACCATCAGCAGGGACAGCTGCACCCGCGTCGCAGGGGAACACCACGA AGCAGTCAGGGACGGAGGCGCAGCGTCCGCGAGATCGGTCACCAATAGGA GAACGTGCGAGAGCGAGCGAAAACCGCGAAGAAGATCCATGCGCTACCGC GCGCGTGGCAAAAGTGGAAGGCACTGGCAACCTTACAGGGGCGGTATCTG AGGGGAGCCGAAATCCGCGGCAGAAGCATTAAACGGTCCAGAGGCGGGAA AGTGGCACGCGGCAATGGAGGAGGAATGGGGGGTGTTGGTGGAAAATGGA ACATCGGAAAGCGAAAACCCAAGGAGATTACCGGCAGGGCGGAAGGCGAT TCGTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGG CACGCTACAAAGCGCGACTGTTGGCTCAAGGCTTTCCACAGGTGGAGGGT GAAGATTTCTCTGAAACTGGTGCCCTCGTAGCTCGCATGTCGACTTTATG TACTGTTTTGAGCCTGGCCACCAAGCGTGATTTCAAATTAGAAGGCAAGG ACGTAGATGCGACGTATTTGAACGCCCCAGTAGAAGAAGAGCTGTGTGTT AAACTACCCCCCGAGTTTTCCCCTTTCTACCGAGACATACCGTTTGTGCG ACGCCTGCGTAAATGCTTGTGCGGCCTCAAGCAGAGCGGCCGAAATGGAA TAACAATCTTGACGACTTCTTGTTGGGATAGGACTCAACCGTTCCACTAC CGACCCATGCTTGTATTTCTCTCGCGACGAAGGGGGAGAGACAGACGTTC TCGTGGCCGTCTGTGTTGACGACCTGGTCATCGCTGGACGTGTGAGAAAG TAGATGAGTTCAAGCACGACACAAGTGGGCGTTCTAGGATGAAAGACTTG GGTTCTCTCTCACGTGTGTTGGGAATAGAAGTACGACGT
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Coding sequence (CDS) from alignment at H-paniculata_contig34049:379..2367-

>mRNA_H-paniculata_contig34049.9097.1 ID=mRNA_H-paniculata_contig34049.9097.1|Name=mRNA_H-paniculata_contig34049.9097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig34049:379..2367- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCCAAGTAAGATGCCGATCGCCAACATGAATGGCCCCAAGTAAGA
TGCCGATCGCCAACATGACGGAGGCGGCGCGCGCGGCTGTGTACTACTTG
AATCGTGCCCCGATGCGACTGCACAACGGAGGGGCGCTGTATGAGAAATG
GCACGGCACGATACCAAAGCTTGACGACCTTCGTGTGTTCGGCTGCACGG
CGTACGTGATGTTCCAATCGCAGCAGAGACGCAAACTCGATGACAAAGCA
TGGTTCGGGGTGTTTCTGGGGTACGACGAAGACAACCGGAGTTATCGCAC
ATATAACCCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACATGAGATTTG
ATGAGGGTTTCCGGAGGCGGCGCGCGCGGCTGTGTACTACTTGAATCGTG
CCCCGATGCGACTGCACAACGGAGGGGCGCTGTATGAGAAATGGCACGGC
ACGATACCAAAGCTTGACGACCTTCGTGTGTTCGGCTGCACGGCGTACGT
GATGTTCCAATCGCAGCAGAGACGCAAACTCGATGACAAAGCATGGTTCG
GGGTGTTTCTGGGGTACGACGAAGACAACCGGAGTTATCGCACATATAAC
CCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACATGAGATTTGATGAGGG
TTTCCACCGTCGGTCACACCAGCGGTCACGCGATCCCGCGATCCCGCGCC
CGAGGCGAGCAAGAAGCGTAACAAACACGGAAGACCAGACGCCGGCGTCA
CAAATGTCGCCCATATTGCCGATATATTCGCTGCCAGCCGCCAGCGCAAA
CCCATTCAGTGTCTTGAGCGATGACGATGATGACGAAAGTAAAAGCGACT
CCAAGATGAAGGATGTGGAGCCCGCAGTCGAAGACGCACCATCAGCAGGG
ACAGCTGCACCCGCGTCGCAGGGGAACACCACGAAGCAGTCAGGGACGGA
GGCGCAGCGTCCGCGAGATCGGTCACCAATAGGAGAACGTGCGAGAGCGA
GCGAAAACCGCGAAGAAGATCCATGCGCTACCGCGCGCGTGGCAAAAGTG
GAAGGCACTGGCAACCTTACAGGGGCGGTATCTGAGGGGAGCCGAAATCC
GCGGCAGAAGCATTAACACCGTCGGTCACACCAGCGGTCACGCGATCCCG
CGATCCCGCGCCCGAGGCGAGCAAGAAGCGTAACAAACACGGAAGACCAG
ACGCCGGCGTCACAAATGTCGCCCATATTGCCGATATATTCGCTGCCAGC
CGCCAGCGCAAACCCATTCAGTGTCTTGAGCGATGACGATGATGACGAAA
GTAAAAGCGACTCCAAGATGAAGGATGTGGAGCCCGCAGTCGAAGACGCA
CCATCAGCAGGGACAGCTGCACCCGCGTCGCAGGGGAACACCACGAAGCA
GTCAGGGACGGAGGCGCAGCGTCCGCGAGATCGGTCACCAATAGGAGAAC
GTGCGAGAGCGAGCGAAAACCGCGAAGAAGATCCATGCGCTACCGCGCGC
GTGGCAAAAGTGGAAGGCACTGGCAACCTTACAGGGGCGGTATCTGAGGG
GAGCCGAAATCCGCGGCAGAAGCATTAA
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