mRNA_H-paniculata_contig34040.9096.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34040.9096.1
Unique NamemRNA_H-paniculata_contig34040.9096.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Match: D7FT29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT29_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 1.180e-63
Identity = 92/110 (83.64%), Postives = 100/110 (90.91%), Query Frame = 1
Query:    1 AFYFSASWCGPCRKYTPQLAQLYLAAKKQHKAFEVVFVSLDGDESSFTRYHAGMPWLAIPYDHPFREDFAAAKGVNSIPRLIVTGRDGQELASNAVGMTWDQLVSWEAQG 330
            AFYFSASWCGPCRKYTPQLA LY  AK QHKAFEVVFVSLDGDE S  RYHAGMPW A+PYDHPFREDFA++KGVNS+PRL+VTGR GQE+ASNAVGMTW+QLV+WEA G
Sbjct:  264 AFYFSASWCGPCRKYTPQLAALYTRAKAQHKAFEVVFVSLDGDEESMDRYHAGMPWPAVPYDHPFREDFASSKGVNSVPRLVVTGRRGQEIASNAVGMTWEQLVTWEAHG 373          
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Match: A0A835YMB1_9STRA (Thioredoxin-like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMB1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.060e-30
Identity = 59/106 (55.66%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 AFYFSASWCGPCRKYTPQLAQLYLAAKKQHKAFEVVFVSLDGDESSFTRYHAGMPWLAIPYDHPFREDFAAAKGVNSIPRLIVTGRDGQELASNAVGMTWDQLVSW 318
            A Y SA WCGPCR+YTPQLAQLY AA++     EVVFVSLD  E  F+ Y A MPW A+PY  P R+  A+A  VNS+PRL+V    G  L+ NAVG+   QL  W
Sbjct:  225 AIYASAHWCGPCRQYTPQLAQLYAAARQATLPVEVVFVSLDRSEPDFSSYLATMPWPAVPYSDPARQAIASALSVNSVPRLMVFSPTGAVLSENAVGVGLPQLKLW 330          
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Match: A0A6S9IW74_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IW74_HETAK)

HSP 1 Score: 115 bits (289), Expect = 5.130e-29
Identity = 59/111 (53.15%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 AFYFSASWCGPCRKYTPQLAQLYLAAKKQHKAFEVVFVSLDGDESSFTRYHAGMPWLAIPYDHPFREDFAAAKGVNSIPRLIVTGRDGQELASNAVGMTW-DQLVSWEAQG 330
            A YFSA WCGPCRK+TPQLA  Y   K   + FEVVFVS DGD  S   Y + MPWLA+P+D   RE   +   V+ IPRL+V G  G  +A NAVGM   +QLV+  A G
Sbjct:  195 AIYFSAHWCGPCRKFTPQLATFYNQMKAARRPFEVVFVSCDGDAGSMMSYFSEMPWLAVPFDDDKREQIQSDYQVSGIPRLMVVGPGGAIVAENAVGMPLSEQLVTHWASG 305          
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Match: L1IDF0_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IDF0_GUITC)

HSP 1 Score: 115 bits (288), Expect = 6.950e-29
Identity = 56/110 (50.91%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 AFYFSASWCGPCRKYTPQLAQLYLAAKKQHKAFEVVFVSLDGDESSFTRYHAGMPWLAIPYDHPFREDFAAAKGVNSIPRLIVTGRDGQELASNAVG--MTWDQLVSWEA 324
            A Y SASWCGPCR++TPQL+Q Y   K+  K FEVVF+S D D  SFT Y   MPWLA+P+D   RE+   A  V  IP+L++ G +G  L  NAVG  +   +L SW A
Sbjct:  215 ALYCSASWCGPCRQFTPQLSQFYTQMKQLGKPFEVVFLSCDRDSKSFTNYFGHMPWLAVPFDSDKRENALGALQVEGIPKLVIVGANGMVLQDNAVGTPLNAQKLDSWIA 324          
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Match: A0A7S0E8P9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E8P9_9CRYP)

HSP 1 Score: 114 bits (284), Expect = 1.770e-28
Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 AFYFSASWCGPCRKYTPQLAQLYLAAKKQHKAFEVVFVSLDGDESSFTRYHAGMPWLAIPYDHPFREDFAAAKGVNSIPRLIVTGRDGQELASNAVG--MTWDQLVSWEA 324
            A Y SASWCGPCR++TPQL+Q Y   K+  K FEVVF+S D D  SF+ Y   MPWLA+P+D   RE+   A  V  IP+L++ G +G  L  NAVG  +   +L SW A
Sbjct:  192 ALYCSASWCGPCRQFTPQLSQFYTQMKQLGKPFEVVFLSCDRDSKSFSNYFGHMPWLAVPFDSDKRENALGALQVEGIPKLVIVGANGMVLQDNAVGTPLNAQKLDSWIA 301          
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Match: A0A7S4UKE2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UKE2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.220e-27
Identity = 55/107 (51.40%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    7 YFSASWCGPCRKYTPQLAQLYLAAKKQHKAFEVVFVSLDGDESSFTRYHAGMPWLAIPYDHP-----FREDFAAAKGVNSIPRLIVTGRDGQELASNAVGMTWDQLV 312
            YFSA WCGPCR++TPQLA  Y A KK     EVVFVSLD DESSF  Y+  MPWLA+P+D        RED      VN IPRL+V    G  +  NAVG   + ++
Sbjct:  244 YFSAHWCGPCRQFTPQLANYYNALKKSSNNVEVVFVSLDHDESSFNSYYKSMPWLAVPFDEDDHGNNVREDLQGRFSVNGIPRLVVLNAQGSVVEENAVGKDLNSIL 350          
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Match: A0A7S1EBY5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EBY5_HEMAN)

HSP 1 Score: 103 bits (258), Expect = 9.460e-26
Identity = 54/110 (49.09%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    1 AFYFSASWCGPCRKYTPQLAQLYLAAKKQHKAFEVVFVSLDGDESSFTRYHAGMPWLAIPYDHPFREDFAAAKGVNSIPRLIVTGRDGQELASNAVGMTW--DQLVSWEA 324
            AFY SASWC PC+++TPQLA  Y  A+   + FEVVFVS D D++S   Y   MPW AIPY  P RE   A   V  IP+L V GRDG+ +  +AV   +  + L  WEA
Sbjct:   70 AFYCSASWCPPCKQFTPQLAAFYNRARAAGRPFEVVFVSCDRDQTSMDSYLGHMPWPAIPYGSPAREAALATLKVQGIPQLTVFGRDGKVVEQSAVQSVFAPNSLDRWEA 179          
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Match: A0A7S1B2A6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B2A6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.280e-24
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    7 YFSASWCGPCRKYTPQLAQLYLAAKKQ-HKAFEVVFVSLDGDESSFTRYHAGMPWLAIPYDHPFREDFAAAKGVNSIPRL-IVTGRDGQELASNAVGMTWDQLVSWEA 324
            Y SA WCGPCR++TP+LA+ Y AAK   H + EVVFVS D D + F  Y   MPWL+IPYD   RE+      V  IP L ++ GR+G+ L +N VG   D +  W +
Sbjct:   27 YVSAHWCGPCRQFTPRLAEFYRAAKGAGHVSLEVVFVSADHDAAGFEAYRRSMPWLSIPYDEDSRENIMGLLKVRGIPMLTLIDGRNGRILDNNIVGKPLD-ITLWRS 133          
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Match: A0A2P6TX90_CHLSO (Nucleoredoxin 1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TX90_CHLSO)

HSP 1 Score: 99.8 bits (247), Expect = 4.170e-24
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    7 YFSASWCGPCRKYTPQLAQLYLAAKKQHKAFEVVFVSLDGDESSFTRYHAGMPWLAIPY-DHPFREDFAAAKGVNSIPRLIVTGRDGQELASNA 285
            YFSA WCGPCR +TP LAQ+Y A K +H  F V+FVS D +   F  Y+  MPWLA+P+ D   ++  ++   V  IPRL++ G DG  +AS+A
Sbjct:   41 YFSAHWCGPCRAFTPTLAQVYEAVKAKHDDFVVLFVSADRNPQQFEEYYKSMPWLAVPFQDRALQQQLSSRFSVMGIPRLVIVGPDGAVIASDA 134          
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Match: A0A7S3LFW5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LFW5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.510e-23
Identity = 50/110 (45.45%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 AFYFSASWCGPCRKYTPQLAQLYLAAKKQHKAFEVVFVSLDGDESSFTRYHAGMPWLAIPYDHPFREDFAAAKGVNSIPRLIVTGRDGQELASNAVG--MTWDQLVSWEA 324
            A YFSASWC PCR++TP L Q Y +     + FEV+FVS D DE+SF  Y   MPWLAI Y  P R+   A+  VN IP L V G +G  +++NAV   + +     W++
Sbjct:  251 ALYFSASWCPPCRQFTPMLIQFYNSLVASGQPFEVIFVSADRDEASFKEYFKKMPWLAIKYSSPRRQGIQASYQVNGIPNLKVFGPNGNLISANAVQEPLNYSTFQRWQS 360          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34040.9096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT29_ECTSI1.180e-6383.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMB1_9STRA2.060e-3055.66Thioredoxin-like-domain-containing protein n=1 Tax... [more]
A0A6S9IW74_HETAK5.130e-2953.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1IDF0_GUITC6.950e-2950.91Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S0E8P9_9CRYP1.770e-2850.00Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4UKE2_9STRA1.220e-2751.40Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1EBY5_HEMAN9.460e-2649.09Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1B2A6_9STRA1.280e-2447.22Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A2P6TX90_CHLSO4.170e-2447.87Nucleoredoxin 1 n=1 Tax=Chlorella sorokiniana TaxI... [more]
A0A7S3LFW5_9STRA1.510e-2345.45Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34040contigH-paniculata_contig34040:748..2208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue6.6e-51
Seed eggNOG ortholog2880.D7FT29
KEGG koko:K17609
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular oxidant detoxification
EggNOG OGsKOG2501@1,KOG2501@2759
EC1.8.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons3
Model size333
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34040.9096.1prot_H-paniculata_contig34040.9096.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34040 748..2208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.0997672-CDS-H-paniculata_contig34040:747..7761622930051.0997672-CDS-H-paniculata_contig34040:747..776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34040 748..776 +
1691481126.6874447-CDS-H-paniculata_contig34040:747..7761691481126.6874447-CDS-H-paniculata_contig34040:747..776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34040 748..776 +
1622930051.1128457-CDS-H-paniculata_contig34040:1353..14261622930051.1128457-CDS-H-paniculata_contig34040:1353..1426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34040 1354..1426 +
1691481126.708465-CDS-H-paniculata_contig34040:1353..14261691481126.708465-CDS-H-paniculata_contig34040:1353..1426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34040 1354..1426 +
1622930051.1245859-CDS-H-paniculata_contig34040:1977..22081622930051.1245859-CDS-H-paniculata_contig34040:1977..2208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34040 1978..2208 +
1691481126.7214088-CDS-H-paniculata_contig34040:1977..22081691481126.7214088-CDS-H-paniculata_contig34040:1977..2208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34040 1978..2208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34040.9096.1

>prot_H-paniculata_contig34040.9096.1 ID=prot_H-paniculata_contig34040.9096.1|Name=mRNA_H-paniculata_contig34040.9096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
AFYFSASWCGPCRKYTPQLAQLYLAAKKQHKAFEVVFVSLDGDESSFTRY
HAGMPWLAIPYDHPFREDFAAAKGVNSIPRLIVTGRDGQELASNAVGMTW
DQLVSWEAQG*
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mRNA from alignment at H-paniculata_contig34040:748..2208+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34040.9096.1 ID=mRNA_H-paniculata_contig34040.9096.1|Name=mRNA_H-paniculata_contig34040.9096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1461bp|location=Sequence derived from alignment at H-paniculata_contig34040:748..2208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTTCTATTTCTCCGCGAGCTGGTGTGGGTGAGTTTTTTTTGTTTGTTT TTTCCAGGGCTCTTTACGTCACACTAACGTCACACATTTTATCTTAGTTT TTATGTAGTGTAACGTTAACGTATGTTCCACTACATAAAAACTAAGATAA AATGTGTGACGTAGTGTGACGTAAAGAGCCCTGGTTTTTTTCATTTTTTC TCGTTTTGTTGTTGTTGTTCTGTTAAAGGAAATGTAGACATATTTTGGTA AAATACTTACGTATGGAAGCATCGGTAAAGGTTCTTGCCTCAGCCTTCCG GGGGTTAAAAAAAAAGAAAGAAAACTTAGTTCCAAGCGGCATCAAGCAAG ATCTCCAGACAACAATGCATTATATACATGTTTTTCAACTGCGGGTATGT AGTGCGCGGACACGACGGAGCTACAGCACGTACGGCGTGTTGGCTTGAAG GGCGAAGGTTCGACGCGTCTTCACTCCCTGCACTTTTTAGGGCAAGCACG CTTCAAAATCTCACAACTGACTTCAAAGCTGGAAGCATCTCGATATGCTC CCCTTACGTAAGTTTACCAGGTCCTTCCCCCCCCCTCCCCCGTTCCCCTG CGACAGACCGTGTCGAAAGTACACACCACAGCTAGCGCAGCTCTACCTGG CGGCGAAGAAGCAGCACAAGGCTTTCGAGGTGATGCACGTGGAATTGGTT GCTGTTGTTGTTTCCTTGACTGGTGATACAGGGGCAGAAACACATACAGT CATACTACAGACACACCGCTTCTACAACCAGTCAGAAAGCAACCTCTTTG CCTGAATGTATACATTGCCGAGGATAAAAACTTGCCTTGAAAATTTGAGC CACAGTGTTTGGCTTCGGTATAAGTGGTAGTCTGGTGGTCTGAGGAGGTC TGAGTTGGGCTGCTCTGCCTGCAAGTGAATAGGGGCACACGTTGCACATA ACAGCTCCTCGTCGCTGTAGAACTCGGTGGCGGGCACGGTACAACGCTGT AGACCAAACAGAGCAGCCAAAAAGCTTCCTCTTCCTGAGTAAATGGACAC AGCAGCATGGACTATTCTAGAACGGTTCACTAACGATGGTATATTTGATT CTTGTCTTGTCTTCCGCTCTGTTCTGTTCTCTTCCCTTCTGTTCTGTTCT CTTCCCTTCTGTTCTGTTCTGTTCTGTTCTGTCCGACGTGTGATTTTTTT TCTCCCTCGCTTTCCTTCTCATGAAACAAGGTTGTGTTCGTCAGTCTGGA CGGCGACGAATCTTCCTTCACCAGGTACCATGCCGGCATGCCGTGGCTTG CCATTCCGTACGACCACCCCTTCCGAGAAGATTTCGCCGCCGCCAAGGGC GTCAACTCTATTCCTCGATTGATTGTGACCGGCCGAGACGGTCAAGAGTT GGCCAGCAATGCCGTAGGAATGACGTGGGACCAGCTCGTATCGTGGGAGG CACAAGGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig34040:748..2208+

>mRNA_H-paniculata_contig34040.9096.1 ID=mRNA_H-paniculata_contig34040.9096.1|Name=mRNA_H-paniculata_contig34040.9096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig34040:748..2208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTTCTATTTCTCCGCGAGCTGGTGTGGGCTTTCTATTTCTCCGCGAGC
TGGTGTGGACCGTGTCGAAAGTACACACCACAGCTAGCGCAGCTCTACCT
GGCGGCGAAGAAGCAGCACAAGGCTTTCGAGACCGTGTCGAAAGTACACA
CCACAGCTAGCGCAGCTCTACCTGGCGGCGAAGAAGCAGCACAAGGCTTT
CGAGGTTGTGTTCGTCAGTCTGGACGGCGACGAATCTTCCTTCACCAGGT
ACCATGCCGGCATGCCGTGGCTTGCCATTCCGTACGACCACCCCTTCCGA
GAAGATTTCGCCGCCGCCAAGGGCGTCAACTCTATTCCTCGATTGATTGT
GACCGGCCGAGACGGTCAAGAGTTGGCCAGCAATGCCGTAGGAATGACGT
GGGACCAGCTCGTATCGTGGGAGGCACAAGGTTAAGTTGTGTTCGTCAGT
CTGGACGGCGACGAATCTTCCTTCACCAGGTACCATGCCGGCATGCCGTG
GCTTGCCATTCCGTACGACCACCCCTTCCGAGAAGATTTCGCCGCCGCCA
AGGGCGTCAACTCTATTCCTCGATTGATTGTGACCGGCCGAGACGGTCAA
GAGTTGGCCAGCAATGCCGTAGGAATGACGTGGGACCAGCTCGTATCGTG
GGAGGCACAAGGTTAA
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