prot_H-paniculata_contig3403.9093.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig3403.9093.1
Unique Name	prot_H-paniculata_contig3403.9093.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	186

Homology

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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: D8LI70_ECTSI (Nuclear cap-binding protein subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI70_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 2.110e-100
Identity = 154/201 (76.62%), Postives = 161/201 (80.10%), Query Frame = 0

Query:    1 MTEMFDFGDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATNDPARGGMGGLALAEMTYGPIPGGGDWHGDGGGGGY-----------------KRPRVDWDARNSR 184
            MTEM DFG +ERPYWDRKNW SLE YKEALK S+TLYVGNLSFYTQESQIYALFDQVG V+RVIMGLDRVKKSPCGFCFVEY  H+D LMAITCLD TALDERIIKVG+DPGFKQGRQ+GRGMSGGQVRDEARATNDPARGGMGGLALAEM     P GG     GGGG Y                 KRPRVDWDAR+ R
Sbjct:    1 MTEMLDFGWSERPYWDRKNWSSLEAYKEALKKSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATNDPARGGMGGLALAEMNGQLAPQGG-----GGGGDYYGHXXXXXXXXXXXRANKRPRVDWDARDRR 196

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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A137PD18_CONC2 (Nuclear cap-binding protein subunit 2 n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PD18_CONC2)

HSP 1 Score: 172 bits (435), Expect = 5.880e-51
Identity = 86/146 (58.90%), Postives = 102/146 (69.86%), Query Frame = 0

Query:    1 MTEMFDFGDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATNDPARGGMGGL 146
            MT +F   D    Y D K  G   D K  L ++TTLYVGNLSFYT E QIY +F + G +KR+IMGLDR+KK+PCGFCFVEY +H D L  +  ++ T LDERII+  +DPGFK+GRQFGRG SGGQVRDE R   DP RGG G L
Sbjct:    1 MTSLFTRLDVASSYRDNKYTGDHIDLKNELSLTTTLYVGNLSFYTTEEQIYEVFVKCGEIKRIIMGLDRIKKTPCGFCFVEYYRHKDALDCLKYVNGTKLDERIIRTDLDPGFKEGRQFGRGKSGGQVRDEFRQEYDPGRGGWGHL 146

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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: F0WMQ1_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMQ1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.540e-49
Identity = 82/136 (60.29%), Postives = 101/136 (74.26%), Query Frame = 0

Query:   11 ERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATN--DPARGGMG 144
            +R YWDRK + SLE+ + A+K S+TLY+GNLSFYT E+Q+  LF +VG +KRVIMGLDR KK+PCGFCFVEY  HA+ L     L  T LD R+I+  +D GF QGRQFGRG SGGQVRD+ R+ +  DP RGG G
Sbjct:   20 QRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLSGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQVRDDRRSKDEYDPGRGGFG 155

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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A024GN20_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GN20_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.000e-49
Identity = 82/136 (60.29%), Postives = 101/136 (74.26%), Query Frame = 0

Query:   11 ERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATN--DPARGGMG 144
            +R YWDRK + SLE+ + A+K S+TLY+GNLSFYT E+Q+  LF +VG +KRVIMGLDR KK+PCGFCFVEY  HA+ L     L  T LD R+I+  +D GF QGRQFGRG SGGQVRD+ R+ +  DP RGG G
Sbjct:   20 QRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLTGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQVRDDRRSKDEYDPGRGGFG 155

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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A8K1CR96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR96_PYTOL)

HSP 1 Score: 165 bits (417), Expect = 5.590e-48
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 0

Query:    8 GDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATND--PARGGMG 144
            G  +R YWDRK + S E+ + A+  S TLY+GNLSF+T E QIY LF +VG VKRVIMGLDR KK+PCGFCFVEY  H + +     ++ T LD R+I+  +D GFK+GRQFGRG SGGQVRD+ R+ +D  P RGG G
Sbjct:   18 GQQQRKYWDRKTYTSYEEQQRAIASSATLYIGNLSFFTSEVQIYELFSRVGNVKRVIMGLDRFKKTPCGFCFVEYNTHEEAVACANFVNETKLDNRVIRCEMDGGFKEGRQFGRGASGGQVRDDRRSRDDYDPGRGGYG 156

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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: K3W5Q9_GLOUD (Nuclear cap-binding protein subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5Q9_GLOUD)

HSP 1 Score: 164 bits (414), Expect = 1.830e-47
Identity = 79/145 (54.48%), Postives = 104/145 (71.72%), Query Frame = 0

Query:   11 ERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATN--DPARGGMGGLALAEMTY 153
            +R YWDRK + S ++ + A+  STTLY+GNLSF+T E QIY LF +VG VKRVIMGLDR KK+PCGFCFVE+  H + +     +  T LD R+I+  +D GFK+GRQFGRG+SGGQVRD+ R+ +  DP RGG G   +A+  +
Sbjct:   20 QRNYWDRKTFSSYDEQQRAMARSTTLYIGNLSFFTTEVQIYELFSRVGNVKRVIMGLDRFKKTPCGFCFVEFSTHDEAIACSNFISETKLDNRVIRCEMDGGFKEGRQFGRGLSGGQVRDDRRSKDEYDPGRGGYGRSDVADGNH 164

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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: W2Q5Q2_PHYPN (Nuclear cap-binding protein subunit 2 n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q5Q2_PHYPN)

HSP 1 Score: 163 bits (413), Expect = 3.080e-47
Identity = 79/139 (56.83%), Postives = 102/139 (73.38%), Query Frame = 0

Query:    8 GDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATND--PARGGMG 144
            G ++R YWDRK + S  + + A++ S+TLYVGNLSF+T E+QIY LF +VG VKRVIMGLDR KK+PCGFCFVEY  HA+       L  T LD R+++  +D GF++GRQFGRG+SGGQVRD+ R+ +D    RGG G
Sbjct:   18 GPSQRQYWDRKTFSSFAEQQRAMERSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEYSTHAEAEACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQVRDDRRSKDDYDAGRGGYG 156

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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A2T0FPC1_9ASCO (Nuclear cap-binding protein subunit 2 n=1 Tax=Wickerhamiella sorbophila TaxID=45607 RepID=A0A2T0FPC1_9ASCO)

HSP 1 Score: 160 bits (405), Expect = 4.280e-47
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 0

Query:   28 EALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATNDPARGGMG 144
            E  KVS+TLYVGNLSF+T E Q+Y LF + GPVK+VIMGLDR +++PCGFCFVE++ H D L A+  LD T LD+RIIK+  DPGF  GR+FGRG+SGGQVRDE R   DP RGG G
Sbjct:   39 EKAKVSSTLYVGNLSFFTTEEQVYELFSKAGPVKKVIMGLDRFERTPCGFCFVEFESHLDSLYAVRYLDQTKLDDRIIKIDRDPGFVDGREFGRGVSGGQVRDEFREDYDPGRGGYG 155

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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A484EHH4_BRELC (Nuclear cap-binding protein subunit 2 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHH4_BRELC)

HSP 1 Score: 162 bits (410), Expect = 4.900e-47
Identity = 78/139 (56.12%), Postives = 102/139 (73.38%), Query Frame = 0

Query:    8 GDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATND--PARGGMG 144
            G ++R YWDRK + S  + + A++ S+TLY+GNLSF+T E+QIY LF +VG VKRVIMGLDR KK+PCGFCFVEY KH +       L  T LD R+++  +D GF++GRQFGRG+SGGQVRD+ R+ +D    RGG G
Sbjct:   18 GPSQRQYWDRKTFTSFAEQQRAMEQSSTLYIGNLSFFTSEAQIYELFSRVGFVKRVIMGLDRFKKTPCGFCFVEYSKHTEADACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQVRDDRRSKDDYDAGRGGYG 156

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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A1W0A133_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A133_9STRA)

HSP 1 Score: 162 bits (409), Expect = 7.570e-47
Identity = 80/141 (56.74%), Postives = 106/141 (75.18%), Query Frame = 0

Query:    8 GDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEY--KKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATND--PARGGMG 144
            G  ++ YWDR+ + SLE+ +EA+K S+TLYVGNLSF+T E+QIY LF  VGPV+ VIMGLDR+KK+PCGFCFVEY  K HA        + +T LD+R+I+  +D GF++GRQ+GRG +GGQVRD+ R+ +D  P RGG G
Sbjct:   12 GPKKKEYWDRQTYASLEEQQEAMKQSSTLYVGNLSFFTSETQIYELFSVVGPVRAVIMGLDRIKKTPCGFCFVEYFNKDHAQA--CANFISSTKLDQRVIRCELDGGFREGRQYGRGTTGGQVRDDRRSKDDYDPGRGGYG 150

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LI70_ECTSI	2.110e-100	76.62	Nuclear cap-binding protein subunit 2 n=2 Tax=Ecto...	[more]
A0A137PD18_CONC2	5.880e-51	58.90	Nuclear cap-binding protein subunit 2 n=1 Tax=Coni...	[more]
F0WMQ1_9STRA	1.540e-49	60.29	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]
A0A024GN20_9STRA	2.000e-49	60.29	Nuclear cap-binding protein subunit 2 n=1 Tax=Albu...	[more]
A0A8K1CR96_PYTOL	5.590e-48	57.55	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
K3W5Q9_GLOUD	1.830e-47	54.48	Nuclear cap-binding protein subunit 2 n=1 Tax=Glob...	[more]
W2Q5Q2_PHYPN	3.080e-47	56.83	Nuclear cap-binding protein subunit 2 n=8 Tax=Phyt...	[more]
A0A2T0FPC1_9ASCO	4.280e-47	64.96	Nuclear cap-binding protein subunit 2 n=1 Tax=Wick...	[more]
A0A484EHH4_BRELC	4.900e-47	56.12	Nuclear cap-binding protein subunit 2 n=1 Tax=Brem...	[more]
A0A1W0A133_9STRA	7.570e-47	56.74	Nuclear cap-binding protein subunit 2 n=1 Tax=Thra...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 1.0E-17 score: 74.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..105 e-value: 1.2E-14 score: 53.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 13.243
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..120 e-value: 3.5E-22 score: 80.7
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 6..151
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..142

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig3403	contig	H-paniculata_contig3403:8021..11210 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig3403.9093.1	mRNA_H-paniculata_contig3403.9093.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig3403 7839..11560 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig3403.9093.1 ID=prot_H-paniculata_contig3403.9093.1|Name=mRNA_H-paniculata_contig3403.9093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MTEMFDFGDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQI
YALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATAL
DERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATNDPARGGMGGLALAE
MTYGPIPGGGDWHGDGGGGGYKRPRVDWDARNSRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR027157	NCBP2
IPR035979	RBD_domain_sf