mRNA_H-paniculata_contig3403.9093.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3403.9093.1
Unique NamemRNA_H-paniculata_contig3403.9093.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: D8LI70_ECTSI (Nuclear cap-binding protein subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI70_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 2.080e-97
Identity = 154/201 (76.62%), Postives = 161/201 (80.10%), Query Frame = 3 
Query:  183 MTEMFDFGDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATNDPARGGMGGLALAEMTYGPIPGGGDWHGDGGGGGY-----------------KRPRVDWDARNSR 734
            MTEM DFG +ERPYWDRKNW SLE YKEALK S+TLYVGNLSFYTQESQIYALFDQVG V+RVIMGLDRVKKSPCGFCFVEY  H+D LMAITCLD TALDERIIKVG+DPGFKQGRQ+GRGMSGGQVRDEARATNDPARGGMGGLALAEM     P GG     GGGG Y                 KRPRVDWDAR+ R
Sbjct:    1 MTEMLDFGWSERPYWDRKNWSSLEAYKEALKKSSTLYVGNLSFYTQESQIYALFDQVGAVRRVIMGLDRVKKSPCGFCFVEYTNHSDTLMAITCLDGTALDERIIKVGIDPGFKQGRQYGRGMSGGQVRDEARATNDPARGGMGGLALAEMNGQLAPQGG-----GGGGDYYGHXXXXXXXXXXXRANKRPRVDWDARDRR 196
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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A137PD18_CONC2 (Nuclear cap-binding protein subunit 2 n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PD18_CONC2)

HSP 1 Score: 172 bits (435), Expect = 1.540e-48
Identity = 86/146 (58.90%), Postives = 102/146 (69.86%), Query Frame = 3 
Query:  183 MTEMFDFGDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATNDPARGGMGGL 620
            MT +F   D    Y D K  G   D K  L ++TTLYVGNLSFYT E QIY +F + G +KR+IMGLDR+KK+PCGFCFVEY +H D L  +  ++ T LDERII+  +DPGFK+GRQFGRG SGGQVRDE R   DP RGG G L
Sbjct:    1 MTSLFTRLDVASSYRDNKYTGDHIDLKNELSLTTTLYVGNLSFYTTEEQIYEVFVKCGEIKRIIMGLDRIKKTPCGFCFVEYYRHKDALDCLKYVNGTKLDERIIRTDLDPGFKEGRQFGRGKSGGQVRDEFRQEYDPGRGGWGHL 146
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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: F0WMQ1_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMQ1_9STRA)

HSP 1 Score: 169 bits (428), Expect = 5.500e-47
Identity = 82/136 (60.29%), Postives = 101/136 (74.26%), Query Frame = 3 
Query:  213 ERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATN--DPARGGMG 614
            +R YWDRK + SLE+ + A+K S+TLY+GNLSFYT E+Q+  LF +VG +KRVIMGLDR KK+PCGFCFVEY  HA+ L     L  T LD R+I+  +D GF QGRQFGRG SGGQVRD+ R+ +  DP RGG G
Sbjct:   20 QRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLSGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQVRDDRRSKDEYDPGRGGFG 155
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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A024GN20_9STRA (Nuclear cap-binding protein subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GN20_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.100e-47
Identity = 82/136 (60.29%), Postives = 101/136 (74.26%), Query Frame = 3 
Query:  213 ERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATN--DPARGGMG 614
            +R YWDRK + SLE+ + A+K S+TLY+GNLSFYT E+Q+  LF +VG +KRVIMGLDR KK+PCGFCFVEY  HA+ L     L  T LD R+I+  +D GF QGRQFGRG SGGQVRD+ R+ +  DP RGG G
Sbjct:   20 QRKYWDRKTYKSLEEQQSAIKQSSTLYIGNLSFYTSENQLCELFSRVGTIKRVIMGLDRFKKTPCGFCFVEYYSHAEALACSNFLTGTKLDNRVIRCEMDGGFTQGRQFGRGFSGGQVRDDRRSKDEYDPGRGGFG 155
[Close]
BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A8K1CR96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR96_PYTOL)

HSP 1 Score: 164 bits (416), Expect = 1.870e-45
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 3 
Query:  204 GDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATND--PARGGMG 614
            G  +R YWDRK + S E+ + A+  S TLY+GNLSF+T E QIY LF +VG VKRVIMGLDR KK+PCGFCFVEY  H + +     ++ T LD R+I+  +D GFK+GRQFGRG SGGQVRD+ R+ +D  P RGG G
Sbjct:   18 GQQQRKYWDRKTYTSYEEQQRAIASSATLYIGNLSFFTSEVQIYELFSRVGNVKRVIMGLDRFKKTPCGFCFVEYNTHEEAVACANFVNETKLDNRVIRCEMDGGFKEGRQFGRGASGGQVRDDRRSRDDYDPGRGGYG 156
[Close]
BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: K3W5Q9_GLOUD (Nuclear cap-binding protein subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5Q9_GLOUD)

HSP 1 Score: 163 bits (413), Expect = 6.010e-45
Identity = 79/145 (54.48%), Postives = 104/145 (71.72%), Query Frame = 3 
Query:  213 ERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATN--DPARGGMGGLALAEMTY 641
            +R YWDRK + S ++ + A+  STTLY+GNLSF+T E QIY LF +VG VKRVIMGLDR KK+PCGFCFVE+  H + +     +  T LD R+I+  +D GFK+GRQFGRG+SGGQVRD+ R+ +  DP RGG G   +A+  +
Sbjct:   20 QRNYWDRKTFSSYDEQQRAMARSTTLYIGNLSFFTTEVQIYELFSRVGNVKRVIMGLDRFKKTPCGFCFVEFSTHDEAIACSNFISETKLDNRVIRCEMDGGFKEGRQFGRGLSGGQVRDDRRSKDEYDPGRGGYGRSDVADGNH 164
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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A2T0FPC1_9ASCO (Nuclear cap-binding protein subunit 2 n=1 Tax=Wickerhamiella sorbophila TaxID=45607 RepID=A0A2T0FPC1_9ASCO)

HSP 1 Score: 160 bits (405), Expect = 9.450e-45
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 3 
Query:  264 EALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATNDPARGGMG 614
            E  KVS+TLYVGNLSF+T E Q+Y LF + GPVK+VIMGLDR +++PCGFCFVE++ H D L A+  LD T LD+RIIK+  DPGF  GR+FGRG+SGGQVRDE R   DP RGG G
Sbjct:   39 EKAKVSSTLYVGNLSFFTTEEQVYELFSKAGPVKKVIMGLDRFERTPCGFCFVEFESHLDSLYAVRYLDQTKLDDRIIKIDRDPGFVDGREFGRGVSGGQVRDEFREDYDPGRGGYG 155
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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: W2Q5Q2_PHYPN (Nuclear cap-binding protein subunit 2 n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q5Q2_PHYPN)

HSP 1 Score: 163 bits (412), Expect = 1.000e-44
Identity = 79/139 (56.83%), Postives = 102/139 (73.38%), Query Frame = 3 
Query:  204 GDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATND--PARGGMG 614
            G ++R YWDRK + S  + + A++ S+TLYVGNLSF+T E+QIY LF +VG VKRVIMGLDR KK+PCGFCFVEY  HA+       L  T LD R+++  +D GF++GRQFGRG+SGGQVRD+ R+ +D    RGG G
Sbjct:   18 GPSQRQYWDRKTFSSFAEQQRAMERSSTLYVGNLSFFTSEAQIYELFSRVGHVKRVIMGLDRFKKTPCGFCFVEYSTHAEAEACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQVRDDRRSKDDYDAGRGGYG 156
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BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A0U1M4R3_TALIS (Nuclear cap-binding protein subunit 2 n=2 Tax=Talaromyces sect. Islandici TaxID=2752542 RepID=A0A0U1M4R3_TALIS)

HSP 1 Score: 160 bits (406), Expect = 1.070e-44
Identity = 80/146 (54.79%), Postives = 99/146 (67.81%), Query Frame = 3 
Query:  177 DRMTEMFDFGDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATNDPARGGMG 614
            DR +  +   +  R Y DR      ED  + LK +TTLYVGNLSFYT E QI+ LF + G +KR++MGLDR +K+PCGFCFVEY  H D L  +  +  T LDERII+  +DPGF++GRQ+GRG SGGQVRDE R   DP RGG G
Sbjct:   12 DRPSAYYQSKNKRRRYNDRDEADKFEDPNDNLKDATTLYVGNLSFYTTEEQIHELFAKCGEIKRLVMGLDRFQKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIRTDLDPGFQEGRQYGRGKSGGQVRDEYREEYDPGRGGYG 157
[Close]
BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Match: A0A484EHH4_BRELC (Nuclear cap-binding protein subunit 2 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHH4_BRELC)

HSP 1 Score: 162 bits (409), Expect = 1.570e-44
Identity = 78/139 (56.12%), Postives = 102/139 (73.38%), Query Frame = 3 
Query:  204 GDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQIYALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATALDERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATND--PARGGMG 614
            G ++R YWDRK + S  + + A++ S+TLY+GNLSF+T E+QIY LF +VG VKRVIMGLDR KK+PCGFCFVEY KH +       L  T LD R+++  +D GF++GRQFGRG+SGGQVRD+ R+ +D    RGG G
Sbjct:   18 GPSQRQYWDRKTFTSFAEQQRAMEQSSTLYIGNLSFFTSEAQIYELFSRVGFVKRVIMGLDRFKKTPCGFCFVEYSKHTEADACAQFLSETKLDNRVVRCEMDGGFREGRQFGRGLSGGQVRDDRRSKDDYDAGRGGYG 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3403.9093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI70_ECTSI2.080e-9776.62Nuclear cap-binding protein subunit 2 n=2 Tax=Ecto... [more]
A0A137PD18_CONC21.540e-4858.90Nuclear cap-binding protein subunit 2 n=1 Tax=Coni... [more]
F0WMQ1_9STRA5.500e-4760.29Nuclear cap-binding protein subunit 2 n=1 Tax=Albu... [more]
A0A024GN20_9STRA7.100e-4760.29Nuclear cap-binding protein subunit 2 n=1 Tax=Albu... [more]
A0A8K1CR96_PYTOL1.870e-4557.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3W5Q9_GLOUD6.010e-4554.48Nuclear cap-binding protein subunit 2 n=1 Tax=Glob... [more]
A0A2T0FPC1_9ASCO9.450e-4564.96Nuclear cap-binding protein subunit 2 n=1 Tax=Wick... [more]
W2Q5Q2_PHYPN1.000e-4456.83Nuclear cap-binding protein subunit 2 n=8 Tax=Phyt... [more]
A0A0U1M4R3_TALIS1.070e-4454.79Nuclear cap-binding protein subunit 2 n=2 Tax=Tala... [more]
A0A484EHH4_BRELC1.570e-4456.12Nuclear cap-binding protein subunit 2 n=1 Tax=Brem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3403contigH-paniculata_contig3403:7839..11560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.7
Seed ortholog evalue3.7e-78
Seed eggNOG ortholog2880.D8LI70
Preferred nameNCBP2
KEGG koko:K12883
KEGG Pathwayko03013,ko03015,ko03040,map03013,map03015,map03040
KEGG ModuleM00399
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005681,GO:0005737,GO:0005829,GO:0005845,GO:0005846,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006408,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016073,GO:0016246,GO:0016441,GO:0016458,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0023052,GO:0030422,GO:0031047,GO:0031050,GO:0031053,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032386,GO:0032388,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0034248,GO:0034399,GO:0034470,GO:0034518,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043900,GO:0043901,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045069,GO:0045071,GO:0045184,GO:0045292,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048525,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051028,GO:0051030,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071363,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097064,GO:0097159,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1903311,GO:1903313,GO:1903900,GO:1903901,GO:1990904,GO:2000112
EggNOG free text desc.RNA cap binding
EggNOG OGsKOG0121@1,KOG0121@2759
Ec32 ortholog descriptionnuclear cap-binding protein subunit 2
Ec32 orthologEc-14_003380.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons4
Model size1090
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3403.9093.1prot_H-paniculata_contig3403.9093.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3403 8021..11210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.5428524-UTR-H-paniculata_contig3403:7838..80201622930050.5428524-UTR-H-paniculata_contig3403:7838..8020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3403 7839..8020 +
1691481126.3533597-UTR-H-paniculata_contig3403:7838..80201691481126.3533597-UTR-H-paniculata_contig3403:7838..8020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3403 7839..8020 +
1622930050.6209636-UTR-H-paniculata_contig3403:11210..115601622930050.6209636-UTR-H-paniculata_contig3403:11210..11560Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3403 11211..11560 +
1691481126.3975635-UTR-H-paniculata_contig3403:11210..115601691481126.3975635-UTR-H-paniculata_contig3403:11210..11560Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3403 11211..11560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.5558813-CDS-H-paniculata_contig3403:8020..81881622930050.5558813-CDS-H-paniculata_contig3403:8020..8188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3403 8021..8188 +
1691481126.363784-CDS-H-paniculata_contig3403:8020..81881691481126.363784-CDS-H-paniculata_contig3403:8020..8188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3403 8021..8188 +
1622930050.571536-CDS-H-paniculata_contig3403:9167..92411622930050.571536-CDS-H-paniculata_contig3403:9167..9241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3403 9168..9241 +
1691481126.3716526-CDS-H-paniculata_contig3403:9167..92411691481126.3716526-CDS-H-paniculata_contig3403:9167..9241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3403 9168..9241 +
1622930050.5852537-CDS-H-paniculata_contig3403:10408..105471622930050.5852537-CDS-H-paniculata_contig3403:10408..10547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3403 10409..10547 +
1691481126.3797657-CDS-H-paniculata_contig3403:10408..105471691481126.3797657-CDS-H-paniculata_contig3403:10408..10547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3403 10409..10547 +
1622930050.6031077-CDS-H-paniculata_contig3403:11033..112101622930050.6031077-CDS-H-paniculata_contig3403:11033..11210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3403 11034..11210 +
1691481126.3898783-CDS-H-paniculata_contig3403:11033..112101691481126.3898783-CDS-H-paniculata_contig3403:11033..11210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3403 11034..11210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3403.9093.1

>prot_H-paniculata_contig3403.9093.1 ID=prot_H-paniculata_contig3403.9093.1|Name=mRNA_H-paniculata_contig3403.9093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MTEMFDFGDTERPYWDRKNWGSLEDYKEALKVSTTLYVGNLSFYTQESQI
YALFDQVGPVKRVIMGLDRVKKSPCGFCFVEYKKHADMLMAITCLDATAL
DERIIKVGVDPGFKQGRQFGRGMSGGQVRDEARATNDPARGGMGGLALAE
MTYGPIPGGGDWHGDGGGGGYKRPRVDWDARNSRR*
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mRNA from alignment at H-paniculata_contig3403:7839..11560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3403.9093.1 ID=mRNA_H-paniculata_contig3403.9093.1|Name=mRNA_H-paniculata_contig3403.9093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3722bp|location=Sequence derived from alignment at H-paniculata_contig3403:7839..11560+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCACGCGGCTGTCAACCCTCTGCCCTCCGTGCCCTCAGCGGTGGACTC
CAATAAAAAATTAACCTATTCGCTGCTGATTCTGTTTATCTCTTGGTTCT
TCCATTGCTGAGTTGCACGGAACCACTCTACTGTATTATCTGCATTTATT
GGCGAAGGGATTATCATCACGGTACAGACAGGATGACTGAGATGTTTGAC
TTTGGTGACACTGAGCGGCCTTATTGGGACAGAAAGAACTGGGGGTCTTT
GGAGGATTACAAGGAAGCCCTCAAGGTGTCCACGACACTCTACGTCGGAA
ACCTGTCCTTCTACACGCAGGAATCTCAGATATACGCTCTCTTCGATCAG
GTGCGATAAGCAAGAAACTACCCAGAAACGCGCCGTCATATGCCGCACCA
CGAATACGATATCTACCGACGTGAGTGCTTGTTGCCAGGTTGCAACTGTG
CTTCAAGGCGACCAGTCGTCCGTTGTTCCCAACATATCTCCATGAATGCG
CACCTCGTTTTGGACATGACCTGCTTATCTAGTCATGCCCGCATCGCGAT
GTTGCATCTGGGCATGCCGTGTTATCCATCCCAATGGTGTTGCATGGTGT
GGCGTGCACGATTTTTGTTGTGTGATTTGAATTAAGTCCGCAGTCCAGTC
TGTAGCATGGTGGACGATATCTGTATACTCGGTTGACTGTAGATGTGTTT
GGTTCGGCATTCGTGACCCCTATACTCCAGCAGCTTCTAGTACTGGCGGT
CTGTACAGTAGTTGGGTTGCTTCTTCATTACGTATAAATGTTGTCGGTAG
CGAGAAGATGGTTACCTGAGTATTAGTCAATCGCTCAGAAGCGAATCTGT
CTTGCAAACCGGACCAAATGTCAAGGGAGAACGCCATCACCATCAATATC
CACAAATGCAGGTTTGGCAAGAGGACGTGCTATGACAAAGTAGCTATCAA
CGCGGCACACGTTCAGCAGGTGCTGCGTGGAAGCTGGTTGCATTCTTGTG
ACTTAATGCGGTAAAATTGTCGTTGTCATTATCGTCGTTTCGGAACGACT
TTTCAAGTTTGTACTCGAGAAACTTCGGGGAAAAGATATAATGTATCGAG
GACGAATCACCAACTGCTCGGGCGTAGCCGTGCCTCCACAAGTACCTGTG
GCTTCTTGATAAAATTAAAATTGGTTAAGTTCAGCTGCATTATACTGTAA
TGCAGACAGGCAGAAGATTTATTTTCTACGCGGATTTGTTGCTGAAACGC
CAACGTTGTCGACGTTTTGTCGAGCACTCAAATTGATCACGTCCCACCCC
ACTACCTTTCGAATCCACCTTTCGCCCAGGTTGGCCCTGTGAAGAGAGTG
ATCATGGGCCTGGATCGCGTCAAGAAGTCACCTTGCGGGTTCTGCTTTGT
AGAGTAAGTGACATAGTATCGCTGCGCCATAAATCCCCCGGGTTCGTTTT
GTGTATCACCGCCGCATGAAGCAAGCCTTCATCATCCAACATCAGCTCTA
GTCCTCGTGAGCGTATGATGCAATTGAATTTCACCATTATCTGCTTTGCG
AGAATGAGCCCAAATTTCCAGGGCGAGGTCAGCCACGATTCTCTCTTTTG
GTGGTGGCCCTGTGTGAAACGTGGCACAAGCCTCCGCTCTCTCTTGAGCG
TTGAACATTTCAAAAGTTATTATGCTAGTCCGTACATAGCGGATTCTACA
GTGAAGTCTACCGACATATGCTACGTCAGTAGTCACCAATGAGAGCATCG
TGTCCTGCAATATGAAATTTCTCACGACCATACACATATCGATTTGACCT
TTGTTGACTTGACCATCATCCACGCACACTCTGTATCGTCGATTCTCGCA
AGTGGTCTTACCAAATCAGCCCCCCGAGACGCCTCCAGAATCTAGAAAAG
AACGGGAAAACTGAATTATTGCTATTTCTCCACCAATTAACGATTTATTT
AGACTACCGCTTCACACAGGATCAGGTACACGTGAGCACTTCAAAACCAG
CCTGATTTGTGTCCGACCATGGTGACGTGGGGGGGGGGGGGGCGTTTACA
CAACTTCACGAGCGTCGTAATGTGACTAGTCATAATCCAACTTGTTGTGA
ACTATTTTTTCCTCAAGTTTCGCACTCTCAGACCCAATAGAACTTGTCGC
CAACACATTTTTTCCAGCTGACCGGCAGCCCTTCCAGTACTTCTGGCACT
GCTGGTACCTCAGCAACAGCTCCGCCGCCTAAACCGTCACTCTGCTGACC
CCATTGCTGTAGACATCACTGAGGCCCACAGTCAAGTCACAGTTGCCCAC
AGTACAGTGCAGTCAGGTAGGGTGCTCCAGCTAAAGACCATACCAACTAG
GAAGTTGCGCCGCACAGTAGCGACTATGGTATTTCCATTCTATGATCAAG
TCAAAATCGTGTCTTACGGTAATCAAGTGGATGAAGTACCCATAGGGTGA
GTACCCCTCCCTTGAAAGAGGGCACCCCCCTCTCGAGAATTCACTTTTCA
ATTTTAGAGGGCCCTGGTTCGTTGGGATTCGTTAAGGCCCCTCGATGCTC
GTATCTGCCATGAATATTAGGTACAAGAAGCATGCGGATATGTTGATGGC
GATTACATGCTTAGACGCAACGGCGCTAGATGAGCGCATCATCAAAGTTG
GCGTGGACCCTGGGTTCAAACAGGGGCGACAGTTCGGTCGAGGGATGTCG
GGCGGGCAGGTGGGAGGATGTGCTTTTGGTTGGTACTCGGAATAGCCGCC
ACTTGAGCGCCGGCCAATGCGGCCTTAGGGGAAAAGCTAGCCTCCCATAT
TTTTTCGTGCTTTGTCATTTCACATTTAGGGCCGCTTCTGTTTGCTGTAA
GGGACGCTTTCAAAACCTGGCGAGAGTTCTATAGTTTGCAGAATACCGTC
GAATTGCGATGTGATATTCAGCGTAAAAGCAGAATGGTTCGCCCCCCGCG
CCGTACCCTCCTACTCATCACAGTATTTCCGAAGACACCGTAATAAGTAC
CACATTTATGGGCAAGGACACGTTCTCTCCTAGTGCATGCGACCTCGGTG
AAAATCGAAGTCTGTAGCGTCACTTACACCAATACAACATGTGGAGAAAG
GGCAAGGTAGCATATTGGAAACGAGTCTCGTGTGCGAATCTTTCCCACTG
GCCTGTAATCCGAAAATTAATTGCATGTTCCAATGGGAAAAACAGGTGCG
AGACGAGGCACGGGCAACGAACGATCCCGCGCGAGGTGGGATGGGTGGGC
TGGCCCTCGCAGAGATGACATATGGGCCTATACCGGGTGGCGGTGACTGG
CACGGGGACGGCGGCGGTGGTGGCTACAAACGACCACGCGTGGATTGGGA
CGCTCGGAATAGCCGACGATAGAATAGGAAACAGTTTTGTGCCACGCAAG
CGACGGTGAAACGTTGGACCTTAAAGAGGGTTCTGTTTTGAAGGTGCTGC
GAGACGTAGCCATGATTTTGTCTTCACTTTCTTTACTTTGCGCGCGAGGC
GTGGGGGGCTTAATTTTATTCGCCCATTGCATCATGGGCGATATGTTAGC
TGTACTTTATTATTTTCACGATGTGTGACGATATCTCGGATATTGTGGAC
GCAGAATTTTTGGGTATATTCATTTTGTTTGGCTTAGAACCCCATGTACA
GTCAGTTTTAAAGAAAGTTCAGCTGTCGAAACACTATAAAAAAATCACAC
ACCGAGGCAGTGACTCCCGAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig3403:7839..11560+

>mRNA_H-paniculata_contig3403.9093.1 ID=mRNA_H-paniculata_contig3403.9093.1|Name=mRNA_H-paniculata_contig3403.9093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig3403:7839..11560+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGAGATGTTTGACTTTGGTGACACTGAGCGGCCTTATTGGGACAG
AAAGAACTGGGGGTCTTTGGAGGATTACAAGGAAGCCCTCAAGGTGTCCA
CGACACTCTACGTCGGAAACCTGTCCTTCTACACGCAGGAATCTCAGATA
TACGCTCTCTTCGATCAGATGACTGAGATGTTTGACTTTGGTGACACTGA
GCGGCCTTATTGGGACAGAAAGAACTGGGGGTCTTTGGAGGATTACAAGG
AAGCCCTCAAGGTGTCCACGACACTCTACGTCGGAAACCTGTCCTTCTAC
ACGCAGGAATCTCAGATATACGCTCTCTTCGATCAGGTTGGCCCTGTGAA
GAGAGTGATCATGGGCCTGGATCGCGTCAAGAAGTCACCTTGCGGGTTCT
GCTTTGTAGAGTTGGCCCTGTGAAGAGAGTGATCATGGGCCTGGATCGCG
TCAAGAAGTCACCTTGCGGGTTCTGCTTTGTAGAGTACAAGAAGCATGCG
GATATGTTGATGGCGATTACATGCTTAGACGCAACGGCGCTAGATGAGCG
CATCATCAAAGTTGGCGTGGACCCTGGGTTCAAACAGGGGCGACAGTTCG
GTCGAGGGATGTCGGGCGGGCAGGTACAAGAAGCATGCGGATATGTTGAT
GGCGATTACATGCTTAGACGCAACGGCGCTAGATGAGCGCATCATCAAAG
TTGGCGTGGACCCTGGGTTCAAACAGGGGCGACAGTTCGGTCGAGGGATG
TCGGGCGGGCAGGTGCGAGACGAGGCACGGGCAACGAACGATCCCGCGCG
AGGTGGGATGGGTGGGCTGGCCCTCGCAGAGATGACATATGGGCCTATAC
CGGGTGGCGGTGACTGGCACGGGGACGGCGGCGGTGGTGGCTACAAACGA
CCACGCGTGGATTGGGACGCTCGGAATAGCCGACGATAGGTGCGAGACGA
GGCACGGGCAACGAACGATCCCGCGCGAGGTGGGATGGGTGGGCTGGCCC
TCGCAGAGATGACATATGGGCCTATACCGGGTGGCGGTGACTGGCACGGG
GACGGCGGCGGTGGTGGCTACAAACGACCACGCGTGGATTGGGACGCTCG
GAATAGCCGACGATAG
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