mRNA_H-paniculata_contig3401.9090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3401.9090.1
Unique NamemRNA_H-paniculata_contig3401.9090.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Match: A0A6H5K1I8_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I8_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 1.790e-116
Identity = 179/290 (61.72%), Postives = 214/290 (73.79%), Query Frame = 1 
Query:    1 NAEVRDRLTFGNPSGLLVVYVGRFGPEKRLDKLVEMCGSVDGVYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGHDDLAPVYASADVHVSCSQFETLGNTVLEAHACGTTVVLPKTQGFVDTVNHEADGYLFDAMHPAAGAAHLAHLRDNRELCRTMGERGRAKVQMQSPERVARDMLAWYRTVCGKYRAETRSKTWGVFWSRLFSVLT--------CWMLVLLVEVFWFTYNLPHAAIKASDVCKYCRSTRNALGNSSFFNKISNTYKALSNIPVGRDA 846
            NAEVR+RLTFGNP GLLVVYVGRFGPEKRLDKLV+MCGSVDGVYLAL+GDG +GP L E HG W+N G R+ KGG+YC++GF+GH+DLAPVYASADVHVSCS FETLGNTVLEAHA GT VV+P+ QGF+DTVNHE DG+LFD    A GAA LA LRD+R+LC +MGERGR KVQMQSPE V++ +L WYR      + +  + +     +   S L         C +L+LLV   WF        +    V +YC + RN LGNSSFFNK+SN+YKAL+NI V R+A
Sbjct:  176 NAEVRNRLTFGNPEGLLVVYVGRFGPEKRLDKLVQMCGSVDGVYLALIGDGAMGPALSERHGCWSNSGKRRTKGGVYCRIGFLGHEDLAPVYASADVHVSCSHFETLGNTVLEAHASGTAVVVPRAQGFIDTVNHEEDGFLFDGHRLAEGAAFLARLRDDRDLCASMGERGRQKVQMQSPEMVSKHVLEWYRRARASTKGQKITTSLATVAAEQLSSLVKVLMGVGIC-LLILLVVALWFAVEAVQ--VLGGSVVRYCHNARNVLGNSSFFNKVSNSYKALTNITVEREA 462
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BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Match: D7G4E3_ECTSI (Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E3_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 1.980e-102
Identity = 157/267 (58.80%), Postives = 195/267 (73.03%), Query Frame = 1 
Query:   67 RFGPEKRLDKLVEMCGSVDGVYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGHDDLAPVYASADVHVSCSQFETLGNTVLEAHACGTTVVLPKTQGFVDTVNHEADGYLFDAMHPAAGAAHLAHLRDNRELCRTMGERGRAKVQMQSPERVARDMLAWYRTVCGKYRAETRSKTW-GVFWSRLFSVLTCWM------LVLLVEVFWFTYNLPHAAIKASDVCKYCRSTRNALGNSSFFNKISNTYKALSNIPVGRDA 846
            ++   +RLDKLV+MCGSVDGVYLAL+GDG +GP L E HG W+N G R+ KGG+YC++GF+GH+DLAPVYASADVHVSCS FETLGNTVLEAHA GTTVV+P+ QGF+DTVNHE DG+LFD    A GAA LA LRD+R+LC +MGERGR KVQ+QSPE V++ +L WYR  C   + +T + +   V   RL S++   M       +LLV   WF        +    V +YC + RN LGNSSFFNK+SN+YKAL+NIPV R+A
Sbjct:    8 KYYTRERLDKLVQMCGSVDGVYLALIGDGAMGPVLSERHGCWSNSGKRRTKGGVYCRIGFLGHEDLAPVYASADVHVSCSHFETLGNTVLEAHASGTTVVVPRAQGFIDTVNHEEDGFLFDGHRLAEGAAFLARLRDDRDLCASMGERGRQKVQIQSPEMVSKHVLEWYRRTCASTKGQTVTTSLVTVAAERLSSLVAVLMGVGICLFILLVVALWFAVEAVQ--VFGGSVVRYCHNARNVLGNSSFFNKVSNSYKALTNIPVEREA 272
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BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Match: A0A835YPI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPI7_9STRA)

HSP 1 Score: 212 bits (540), Expect = 5.870e-60
Identity = 129/285 (45.26%), Postives = 167/285 (58.60%), Query Frame = 1 
Query:    4 AEVRDRLTFGNPSGLLVVYVGRFGPEKRLDKLVEMCGSVDGVYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGHDDLAPVYASADVHVSCSQFETLGNTVLEAHACGTTVVLPKTQGFVDTVNHEADGYLFDAMH------PAAGAAHLAHLRDNRELCRTMGERGRAKVQMQSPERVARDMLAWYRTVCGKYRAETRSKTWGVFWSRLFSVLTCWMLVLLVEVFWFTYNLPHAAIKASDVCKYCRSTRNALGNSSFFNKISNTYKALSN-IPVG 837
            A+ R +LTF +P   L+VYVGR  PEK LD LV M  SVD  YLA++GDGP+GP L   HG+  NR        +YC+ GF+ HD L  VYASAD H + S FETLGNTVLEAHACG  VV P+ QGFVDTV+H  DG LFDA         A+GA  LA LRD+  L   +G  GRAKV + +P++VARD++ WY     +  A     T  V  S+LF+       VL+V + W  Y LP A  +A  V +  +  R+ + +S     I  +Y  L+  +P+G
Sbjct:  200 AKTRAQLTFNDPDAFLIVYVGRLAPEKGLDTLVTMARSVDRCYLAVIGDGPLGPHLAAQHGA-ANR--------LYCRPGFLDHDALPAVYASADAHATASVFETLGNTVLEAHACGVPVVAPRAQGFVDTVSHGVDGLLFDAAGLGAVGAAASGARALAALRDDPALRARLGAAGRAKVLLHAPDQVARDIVQWYGAAAAR-GARAGPLTAAVRASQLFAA------VLMVLIGWHVYALPAALARA--VGELLKGLRSVIASSPLARSIRASYGTLAGPVPIG 466
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BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Match: A0A7S4FQE8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FQE8_9EUGL)

HSP 1 Score: 152 bits (383), Expect = 3.990e-38
Identity = 88/191 (46.07%), Postives = 110/191 (57.59%), Query Frame = 1 
Query:   10 VRDRLTFGNPSGLLVVYVGRFGPEKRLDKLVEMCGS--VDGVYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGHDDLAPVYASADVHVSCSQFETLGNTVLEAHACGTTVVLPKTQGFVDTVNHEADGYLFDAMHPAAGAAHLAHLRDNRELCRTMGERGRAKVQMQ-SPERVARDMLAWY 573
            +R RLTF +P   LV+YVGR  PEK +D LV+      ++ VYLALVGDGP+   +   HG+ T          +YC   F+ H  LA +YA+ D HVS S FET GNTVLEA A GT VV+P  QGF DTV H ADG+LF+     +    +A LR +  L   MG  GR K     +P  VARD + WY
Sbjct:  201 LRCRLTFDHPDAFLVLYVGRLSPEKSIDVLVDALSQAGMEAVYLALVGDGPLAGRMAALHGAHTR---------VYCVPEFLPHSKLAALYAACDAHVSASVFETFGNTVLEAQASGTPVVVPDAQGFRDTVRHGADGFLFEPGSARSLGLRVAKLRADPRLRDEMGRAGRGKALAGLTPAAVARDYVDWY 382
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BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Match: A0A482RVI5_9ARCH (Glycosyltransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVI5_9ARCH)

HSP 1 Score: 121 bits (303), Expect = 2.560e-28
Identity = 66/140 (47.14%), Postives = 87/140 (62.14%), Query Frame = 1 
Query:    1 NAEVRDRLTFGNP-SGLLVVYVGRFGPEKRLDKLVEMCGSVDG----VYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGHDDLAPVYASADVHVSCSQFETLGNTVLEAHACGTTVVLPKTQGFVDTVNH 405
            +A+VR  LTF +  +  L VYVGR   EKR+D L+E    +       YLA++GDGP        H          ++  IYC+  F+ HD+LA +YAS+DVHV+ S+FETLGNTVLEA+AC   VV P+TQGFV+TV H
Sbjct:  100 SAQVRSELTFNDADNAFLCVYVGRISEEKRIDVLIEALRLLRSGGTRAYLAIIGDGPQAAKYAALH---------SKESRIYCRPRFLSHDELAGLYASSDVHVTASEFETLGNTVLEANACALPVVTPRTQGFVNTVQH 230
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BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Match: A0A7S2UXF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXF4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.030e-25
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:    4 AEVRDRLTFGNPS-GLLVVYVGRFGPEKRLDKLVEMCGSVDGVYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGHDDLAPVYASADVHVSCSQFETLGNTVLEA 342
            +E+RD+LTFG  S  +L V V R  PEKRLD+L+ +      ++LA++GDGP+G  L   HG   NR        I+CQ GF+ H+DLA VYAS+DVHVS S FETLGNTVLEA
Sbjct:   10 SELRDKLTFGKGSDAILAVCVSRLAPEKRLDRLLPLLSKNPRLHLAIMGDGPLGKDLAGLHGP-ENR--------IFCQPGFLSHEDLAQVYASSDVHVSASCFETLGNTVLEA 114
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BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Match: A0A1L9QPS2_9CYAN (Glycosyl transferase n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1L9QPS2_9CYAN)

HSP 1 Score: 104 bits (259), Expect = 5.320e-21
Identity = 66/192 (34.38%), Postives = 92/192 (47.92%), Query Frame = 1 
Query:    7 EVRDRLTFGNPSGLLVVYVGRFGPEKRLDKLVEMCGSVDGVYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGHDDLAPVYASADVHVSCSQFETLGNTVLEAHACGTTVVLPKTQGFVDTVNHEADGYLFDAMHPAAGAAHLAHLRDNRELCRTMGERGRAKVQMQSPERVARDMLAWYRTV 582
            E+RDRL+ G+P   L++YVGR G EK +D++  +  S+ G  LALVGDGP    L EH                   +G++    LA  +ASAD  +  S  ETLG  +LEA A G  VV   T G  D V    +GYLFD   P    +    L DN+    T+ +  R + +        R +  +Y+ V
Sbjct:  187 EMRDRLSQGHPDSPLLLYVGRLGAEKEIDRIKPVLESIPGARLALVGDGPNRAILEEHFAGTPTH-----------FVGYLRGQTLASAFASADAFIFPSSTETLGLVLLEAMAAGCPVVAAGTGGITDIVTDGVNGYLFDPTDPQGAISATQKLLDNQAERDTLRQNARQEAERWGWSSATRQLHRYYQAV 367
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BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Match: UPI0019B3EA9A (Uncharacterized protein n=1 Tax=Okeania sp. KiyG1 TaxID=2720165 RepID=UPI0019B3EA9A)

HSP 1 Score: 100 bits (249), Expect = 1.480e-20
Identity = 63/192 (32.81%), Postives = 92/192 (47.92%), Query Frame = 1 
Query:    7 EVRDRLTFGNPSGLLVVYVGRFGPEKRLDKLVEMCGSVDGVYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGHDDLAPVYASADVHVSCSQFETLGNTVLEAHACGTTVVLPKTQGFVDTVNHEADGYLFDAMHPAAGAAHLAHLRDNRELCRTMGERGRAKVQMQSPERVARDMLAWYRTV 582
            E+RDRL+ GNP   +++YVGR G EK +D++  +  ++    LALVGDGP    L +H                   +G++    LA  YASAD  +  S+ ETLG  +LEA A GT VV   + G  D V    +GYLFD            +L D  E   T+ +  RA+ +        + +  +Y+ V
Sbjct:   59 EMRDRLSQGNPDSTILLYVGRLGAEKEIDRIKPILEAIPNACLALVGDGPNRESLEQHFAGTPTH-----------FVGYLRGQKLASAYASADAFIFPSRTETLGLVLLEAMAAGTPVVAANSGGIPDIVTDGINGYLFDPADEKGAITATQNLLDRSEERETLRQNARAEAECWGWSAATQQLRNYYQKV 239
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BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Match: A0A6M0BZ57_9CYAN (Glycosyltransferase n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0BZ57_9CYAN)

HSP 1 Score: 102 bits (254), Expect = 2.490e-20
Identity = 64/194 (32.99%), Postives = 95/194 (48.97%), Query Frame = 1 
Query:    1 NAEVRDRLTFGNPSGLLVVYVGRFGPEKRLDKLVEMCGSVDGVYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGHDDLAPVYASADVHVSCSQFETLGNTVLEAHACGTTVVLPKTQGFVDTVNHEADGYLFDAMHPAAGAAHLAHLRDNRELCRTMGERGRAKVQMQSPERVARDMLAWYRTV 582
            +AE+RDRL+ G+P   L++YVGR G EK +D+L  +  ++    LALVGDGP    L EH                   +G++   +LA  YASAD  +  S+ ETLG  +LEA A GT VV  ++ G  D V    +GYLFD        A    L +  E   T+ +  R + +        + +  +Y+ +
Sbjct:  185 SAEMRDRLSEGHPDSTLLLYVGRLGAEKEIDRLKPVLEAIPNARLALVGDGPHRKALEEHFAGTPTH-----------FVGYLRGQELASAYASADAFIFPSRTETLGLVLLEAMAAGTPVVAARSGGIPDIVTDGVNGYLFDPADDDGAIAATKKLLERPEERETLRQNAREEAERWGWSAATQQLRRYYQAI 367
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BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Match: A0A261KKG4_9CYAN (Glycosyl transferase n=17 Tax=Oscillatoriales TaxID=1150 RepID=A0A261KKG4_9CYAN)

HSP 1 Score: 102 bits (254), Expect = 2.520e-20
Identity = 64/196 (32.65%), Postives = 97/196 (49.49%), Query Frame = 1 
Query:    7 EVRDRLTFGNPSGLLVVYVGRFGPEKRLDKLVEMCGSVDGVYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGHDDLAPVYASADVHVSCSQFETLGNTVLEAHACGTTVVLPKTQGFVDTVNHEADGYLFDAMHPAAGAAHLAHLRDNRELCRTMGERGRAKVQMQSPERVARDMLAWYRTVCGKY 594
            E+RDRL+ GNP   +++YVGR G EK ++++  +  ++   YLALVGDGP    L EH   + N  T          +G++   +LA  YASAD  +  S+ ETLG  +LEA A GT VV   + G  D V    +GYLFD            +L    E   ++ +  RA+ +        + +  +Y+ +   Y
Sbjct:  187 EMRDRLSQGNPDSTILLYVGRLGAEKEIERIKPILEAIPNAYLALVGDGPNRQTLEEH---FANTPTHF--------VGYLRGQELASAYASADAFIFPSRTETLGLVLLEAMAAGTPVVAANSGGIPDIVTDGINGYLFDPGDEKGAITATQNLLARSEERESLRKNARAEAERWGWSAATQQLRNYYKKIISSY 371
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3401.9090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1I8_9PHAE1.790e-11661.72GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G4E3_ECTSI1.980e-10258.80Glycosyltransferase, family GT4 n=1 Tax=Ectocarpus... [more]
A0A835YPI7_9STRA5.870e-6045.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4FQE8_9EUGL3.990e-3846.07Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A482RVI5_9ARCH2.560e-2847.14Glycosyltransferase (Fragment) n=1 Tax=archaeon Ta... [more]
A0A7S2UXF4_9STRA1.030e-2553.51Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1L9QPS2_9CYAN5.320e-2134.38Glycosyl transferase n=2 Tax=Cyanobacteria TaxID=1... [more]
UPI0019B3EA9A1.480e-2032.81Uncharacterized protein n=1 Tax=Okeania sp. KiyG1 ... [more]
A0A6M0BZ57_9CYAN2.490e-2032.99Glycosyltransferase n=1 Tax=Okeania sp. SIO2H7 Tax... [more]
A0A261KKG4_9CYAN2.520e-2032.65Glycosyl transferase n=17 Tax=Oscillatoriales TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3401contigH-paniculata_contig3401:11478..17943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score87.0
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog312284.A20C1_12094
Preferred namemgtA
KEGG koko:K12583
Hectar predicted targeting categoryother localisation
GOsGO:0000030,GO:0003674,GO:0003824,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0070085,GO:0071704,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509
EggNOG free text desc.Glycosyltransferase Family 4
EggNOG OGs2GIZG@201174,3UWGR@52018,COG0438@1,COG0438@2
COG Functional cat.M
CAZyGT4
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Exons8
Model size1308
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3401.9090.1prot_H-paniculata_contig3401.9090.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3401 11934..17487 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.1523376-UTR-H-paniculata_contig3401:11477..119331622930050.1523376-UTR-H-paniculata_contig3401:11477..11933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3401 11478..11933 -
1691481126.141625-UTR-H-paniculata_contig3401:11477..119331691481126.141625-UTR-H-paniculata_contig3401:11477..11933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3401 11478..11933 -
1622930050.274977-UTR-H-paniculata_contig3401:17487..175081622930050.274977-UTR-H-paniculata_contig3401:17487..17508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3401 17488..17508 -
1691481126.234019-UTR-H-paniculata_contig3401:17487..175081691481126.234019-UTR-H-paniculata_contig3401:17487..17508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3401 17488..17508 -
1622930050.2924879-UTR-H-paniculata_contig3401:17859..179431622930050.2924879-UTR-H-paniculata_contig3401:17859..17943Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3401 17860..17943 -
1691481126.2427802-UTR-H-paniculata_contig3401:17859..179431691481126.2427802-UTR-H-paniculata_contig3401:17859..17943Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3401 17860..17943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.1634064-CDS-H-paniculata_contig3401:11933..119721622930050.1634064-CDS-H-paniculata_contig3401:11933..11972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 11934..11972 -
1691481126.1548934-CDS-H-paniculata_contig3401:11933..119721691481126.1548934-CDS-H-paniculata_contig3401:11933..11972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 11934..11972 -
1622930050.1813738-CDS-H-paniculata_contig3401:12457..125381622930050.1813738-CDS-H-paniculata_contig3401:12457..12538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 12458..12538 -
1691481126.1647744-CDS-H-paniculata_contig3401:12457..125381691481126.1647744-CDS-H-paniculata_contig3401:12457..12538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 12458..12538 -
1622930050.1992128-CDS-H-paniculata_contig3401:12870..130051622930050.1992128-CDS-H-paniculata_contig3401:12870..13005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 12871..13005 -
1691481126.1766312-CDS-H-paniculata_contig3401:12870..130051691481126.1766312-CDS-H-paniculata_contig3401:12870..13005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 12871..13005 -
1622930050.215232-CDS-H-paniculata_contig3401:13712..137871622930050.215232-CDS-H-paniculata_contig3401:13712..13787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 13713..13787 -
1691481126.1919823-CDS-H-paniculata_contig3401:13712..137871691481126.1919823-CDS-H-paniculata_contig3401:13712..13787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 13713..13787 -
1622930050.230204-CDS-H-paniculata_contig3401:15433..155471622930050.230204-CDS-H-paniculata_contig3401:15433..15547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 15434..15547 -
1691481126.2040975-CDS-H-paniculata_contig3401:15433..155471691481126.2040975-CDS-H-paniculata_contig3401:15433..15547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 15434..15547 -
1622930050.2450418-CDS-H-paniculata_contig3401:16462..166511622930050.2450418-CDS-H-paniculata_contig3401:16462..16651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 16463..16651 -
1691481126.2170563-CDS-H-paniculata_contig3401:16462..166511691481126.2170563-CDS-H-paniculata_contig3401:16462..16651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 16463..16651 -
1622930050.259411-CDS-H-paniculata_contig3401:17373..174871622930050.259411-CDS-H-paniculata_contig3401:17373..17487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 17374..17487 -
1691481126.2257433-CDS-H-paniculata_contig3401:17373..174871691481126.2257433-CDS-H-paniculata_contig3401:17373..17487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 17374..17487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3401.9090.1

>prot_H-paniculata_contig3401.9090.1 ID=prot_H-paniculata_contig3401.9090.1|Name=mRNA_H-paniculata_contig3401.9090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MCGSVDGVYLALVGDGPVGPFLLEHHGSWTNRGTRKRKGGIYCQLGFMGH
DDLAPVYASADVHVSCSQFETLGNTVLEAHACGTTVVLPKTQGFVDTVNH
EADGYLFDAMHPAAGAAHLAHLRDNRELCRTMGERGRAKVQMQSPERVAR
DMLAWYRTVCGKYRAETRSKTWGVFWSRLFSVLTCWMLVLLVEVFWFTYN
LPHAAIKASDVCKYCRSTRNALGNSSFFNKISNTYKALSNIPVGRDAR*
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mRNA from alignment at H-paniculata_contig3401:11478..17943-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3401.9090.1 ID=mRNA_H-paniculata_contig3401.9090.1|Name=mRNA_H-paniculata_contig3401.9090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6466bp|location=Sequence derived from alignment at H-paniculata_contig3401:11478..17943- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGCTGAGGTGCGAGATCGTCTGACATTCGGCAATCCCTCGGGGTTGCT
CGTCGTATACGTCGGGAGGTTCGGACCCGAAAAGGTATATATATGTTTAT
AATTTTGGACCTGATGAAGATTCACATGGGCTTATGAACTCAGTTACGTA
TGTTCTTGTACGCTATTGCCGTACCTGCTATGCATATATAGATGTAGCCA
ACTTGATTTCATCAAGCGTCAATGTTCTGTGACGTTGTGAAGACGAAGAT
GACAATGAAAAATTCTACTTATTGGACGATGACTATTTTGTACAAAAAAC
AGACGCTTTTATCGAAACACCTCATACATTTTCTGTCATCTGTGTCCATT
TATATATTATATGACTTGTATGCTGCCTTTACGTTTTGATATGTCGTCAT
TATTCACACTTTGTACTATTTTTGTTATTTCCCAGCGCTTGGATAAGCTG
GTGGAAATGTGCGGGAGTGTAGACGGGGTTTACCTCGCGCTCGTCGGGGA
CGGACCTGTGGGGCCTTTCCTATTGGAGCATCACGGGAGTTGGACCAATC
GTGGGACGCGGAAAAGGAAGGTCCGGCTTGTCCAAAGTCAAGAGAGCTAG
CTATGTAACAGACAGACACACTTATTATTGAAGCTGGAACTGCAAAACAC
TTGCGATATACACGTAGCTTTACTGGTGTCTCCATTTTCCAACACAAGAC
AATTGACCACTGCTTGACATGTTGAGAGCCTATGTGTGCCAACACACGGC
ACCACGAGAGTGCTCTTGTTTCTATACTACGATTATTAGGGTATGTTGAG
CTTGCCCTTACGAAGTATTATTACCTTTCACCTTCACCTTGTCTGTTCCC
TGTCGTGGTCACGTGTGAAGTCCGTGTATTTTATATCCTGGCTGGGCCTC
CACTTGAACCTTGGGTTGGCCGATCTTGCTTGTCGATTGCAGTGGGGTCA
CAGATTCGGGTGGAATACGTGTCATCATTCATCGTAAGAGACAGCACGTA
AAGACACACAACTTTGAGTTACACGTGGACGTGGCCACTTCAGGACATCC
CAATGTCTGTATTAGGCATCATATTACGTTGCGTATGTTGAAATGCATTT
GAGATGAAGTGGATCTCAACAGCCCACCTACCGATCCTATATGGGGCGCG
ACTTTTCTATACGCATTTGGTGCGTTAAAGTGGGCCACATGGACTGTACA
ACTCAATACTGACCGGTACCTGTGTACGATATTCATGTTTTCGCATCCGA
CGACGGAAAGTGGAAAATGACCGCTGGTGCGACTAAATACAGGGTGGGAT
CTACTGTCAACTGGGGTTTATGGGGCACGATGACCTGGCGCCAGTGTACG
CCTCGGCTGACGTTCACGTGTCCTGCAGCCAATTTGAAACGTTGGGGAAC
ACGGTATTGGAAGCTCACGCGTGCGGTACGACCGTGGTGCTCCCAAAGAC
ACAGGGTTTCGTGGATACTGTGAATCATGAGGTGACAAGTACATGGTACC
TGGTCTTTGGGGGAAATTTGAGTGAAGCGTTATTATTGTTGTTGTGCATT
GAACTCCCGAAAGGATGCAGCTCACCTTGGTCAGTCTTCTTCACCTGGCA
TAGCTTTTTCAGAGGGCTCAAATCCAGAAGTAATGGCGTGAGCATACTAT
TTAGCACACGCACAAGCGGTGGGAAGCAGCTGCGTTGGGCAGAGGTCTGT
CTCAATGGAGAGCAAGCGCAGGTGTCTGTCACACGCCTAGGCGTGCAGGA
CGAGTAACAAACTCGAAGATAATGGAGAATACCGCCTTGCATGGTCTTAT
TACAGGCAACTGGAGCAATAGTCGTACAGTCGGTTGTTGGCGTTTCGTCG
GTGGCGACAGATGACTAATAGTGTAACGGAGATTTTTCGGCGTCTGACCT
TGACAAAAGAGAAAGAACGGACATCAACAACAACTGATTGTTTCCAAATT
CAACGATAAAAATAATCACGGAATACTCTTCTGTGATGAAACGTTTCCGC
GGAGATCGCTTGAAAGAAGAAACCCGTTTTTTTCTTCAACGTTTGAAAAA
AAAATCGTTTTGTTCATTACGATTCCGAGTTTTTTTGTTTTTTTTCCCCT
CCAATCTCATCAGAAGTCGCGATGACACACATTTCTTTGGAAGAAAGTTT
TGTAATTTCCCCTCACATTACCGTTACTACAATCAAGTACTTCCCTGTGG
ACTATTCTATCTTTCTTACTGTTGTAGAAAATGCCTTATTGACATAGCCG
GGATATGGTCTACCTGAACAAGGTTACAGCGAACAACAACCATACTCTAG
TGCTAAATCTACAATTAACTAACACTCTTTGTGCTAACAACAATCAGTGG
CCATTCGGTGTCATTGCAACGATTACTTATCTTTTTCGTTGCCCAGGCGG
ATGGCTATCTATTCGATGCCATGCATCCCGCGGCAGGAGCTGCCCACCTC
GCGCATCTCCGCGATAACCGAGAGCTGTGTCGGACGATGGGAGAGCGAGG
GCGGGCGAAGGTACGGTGAACTACCTGCAGAATGCTACCGTACCCGACCT
GGTACATACCCAATTCTGAAGAGCAACGTACCTGGACAACTGCTAGTACC
CACCACCAGACATGGCGTTGCCGTCGCAAGGCCCCCAAGTCCTCTTGTGC
TTGCCTGTACATATTGGAACGAGACCCCACTTTTCCATCTGTAACGCACA
CCGCTGGTGATTAAGGAATGGGCACGGAAAATACCACAAAGGGTTCGTAA
TATTCAATGAAAGCATAACACCATTCAGGTCGCATCTGAAAGAATCATAC
TTGCAAATTGGGGTTAATTGGCAGCTGTCGTCTGACCTGCTTTACAGGTT
TTTTGGGGGCAGTTACCTAAATTTTATACTTGCTTAGGGTTGCCGTTCAA
GCAGCAGATGTGTATGACTATCGACCCTTTAACATATCTCAACACATATC
GAGGTAGATGTAGATGGTGGGGTATATTCAAGATGAAGGGCATTCGTAAG
CCAAACGTTACGGTCTGCTACAATCAAGTGTGTATGGACAGGTAAGAAGA
TATCATCAACTATCATGTACGTTGGTATTCAGAGCGGTACGTTTGTCACA
GTTGCCATGTTACCGCAGTCAGTTATCGCTTGTCCCAGTTGAACTTGCCG
CTGTACCAATGGCACAGTCAGTGCGCCCTAAAAGTAAATTTACAGTGAGA
GCGATGCCAATCTTAACAATAGATCTTATCTCCTTAGGTGTATCTCCTAC
TCTATATGTACTACATGAGCACGAGGTACTTTCTGAACCTCGGCGCATAT
CTTTGGCACAGTCGCAGCAGGTGGGGAGGGGTGTGTGGGTGATATCCTTT
AACAAAAGTTGTGAGGGTATATTCCCAAGCCCATCAATATTTTCCATTCC
TAATTTCTCAACCTGGAGTTTTTCAGTGGACCTTCACGTTATCATTTCGA
TAAATTATTTCTGGTTGCCGTTGTCAAGTGTACGACTCTTGGAAAATGAC
ATGATACCCGACCAATGTGATGCGGGATACCCGGTATCATAACAAAATAT
GCAAAGTAGCACACGAGACCCCAAAAAAGAAAGGGCCCGTGCAGCGCTGC
ACCTTATGGTCGTCGTTACGACCTTCCGTATGAGTACATCGATACGGAAC
ACCTCTGGTTGAGAAACCTCGCGGGCAGCAGGAGTCATATGAACGGAGCA
ATTATAGCCGTCGACCCATTTCGATTGTGCGTACGATATAGAAGGGTTCA
TTTTTGTCACGCGGAGATAATGTATCTCATCGCGGTTTTGAGTGAGTTGT
GTGTCCCTGCTTCATTCGTTCTTTGCTGCCTCGACACCTATTTCAACTAC
TTCTTGTACTGTATTACAATAATTTACGGCATTTTAATCATGCTCGGTAG
TTTGACAAAATTCACGGAGAGTATAATGTCGGGTACAGTCAAGTGTTTTT
TGCGTTGTACAACGTTGTGATTCGATCAAGGTAACAGCAATTTTTTCATG
GTATTATCGTAGAATGTCGTGGCCATATTTATACAGTGGTAAATCCGCGA
ACATCACATAAGTAAGCTCCCCTTAAAGATCCCCGTTTTCTTTTTTTTGT
TCCTTCCGACGGCGGTAATCGCAAACTCTCTCCTGCACTTTTCACATGTG
ATACAGGTTCAGATGCAGTCACCAGAACGCGTTGCTCGAGACATGCTCGC
CTGGTACCGCACAGTTTGCGGAAAATATAGGGTGCGTGAGAGGCAATACT
GTTCTCTCTGTGTGTAGGTTTTGCGTATAATTTTCCACCCCTCGGACAAC
TACGAAAAATTGGCGTACTCGCCACGAAAAAGACAAATATTCGCGTGAGG
TTCGGAATGAGCGGACACATGGAATAAAGTACCCACCTCTGTCCATTCGA
TTTACGAGTATTTTTAGCAGTCCTGAATGGTCCGCGGCACATGGAATACA
CGACTTTATTCTGAAGTCAGGCGAATACCTTTTGATTTTCGTGGCGAGTA
GGCCAATTATTCGTATTTGTCCGGGGTGTGTAATCTTCGCGTGTTCGGGG
AGAGACTGTGCTTGATTGCCTTGAAAGTCGCTCATGCTTTCGCGCTAGCA
CTAGCCCCCCGTCCCCACCATGTGTCGCTGTGTTTTGCATGGGTCAGCGA
TGTTACTCCACTATCAAGTTACTTGCGAGACGAATTCAGTTTTGGATTGA
CCTTCGTGTCTGCATTTTGTGGCACATTTTTGCGCGCACTCTTCGAAATA
GATGATTGGACTGGCCGTTACTGGACGTTACCGGGCGTGCTGTTCCCTAC
GATTGTGAAGGCGATTCTACCGAAGAGATGCTTGTTCAAGTGATACATGA
TTTGTCCAAGTGATCTAGCTTTCCACGTCATTGAGTGAGTTCTACGTTCA
CGTGATATAAGCTTGCTGCATTCATGTGCGTACATCAGGCAGAGACACGA
AGCAAAACATGGGGCGTGTTCTGGAGCCGTCTATTTTCCGTGCTGACGTG
CTGGATGCTGGTGCTGCTGGTGGAGGTGTTCTGGTTCACCTACAACTTGC
CGCACGCCGCAATTAAGGCAAGCGTTTCGCTCCTGTGGTTTTATTTCAAA
ATCTATCGGCAGGGTGCAAGTAGTATCACATTAGGTCGTTACAGGTATGT
CGCACAAATATTTTTTTGCGGCAGTATTCTGTATATTCCGTATAGTGGCA
TTTTCATGAAATTCGTGACACCTCGGTGTCCTATTGCACACTCTCGTCGC
CACTACAATATGACAAGTTTTTCATCCCGCGTCCAACGTTGTTGTCTTCT
CCCCTTCCCACTTGCCTTTGCCCAATGGACACATGGGGTCCAAAAATGCA
CCCATGAAATGAATGGTGGCGTTATTATGTTTTTTCTTGTGGGTTTCTTC
TTCAGGACGTGTGCAAGTACTGCAGGTCTACAAGGAATGCCCTTGGCAAC
TCGTCTTTCTTCAACAAGATCTCCAACACATACAAGGTTGGTTTATCATG
CTCCAAGGTTACTTTGTTGTCCTCCACTCCTGCGCTTGGTCGATTGCCAA
AGCACTCATATATGAGATGCACCCGTCTGCACGTCTATCCATCCGTCAAA
AATGCCCCGTTGTTGCGACTTCGTAGCGAGAACGCGAATCGTAGAAACAC
CGTCAAAATTGCGGCCCATCTCCTCATGTACCCGGAATTTGCCGAGTGAA
GGGTATCCACGTAGACAAAGTAGTAGGCATACACTACGACGTCGACTCAT
CAAGCACCGGCTTCGTCAAAAGTCCATCCTAGGCAGAGTAGAAGATTGAA
GGCAGTTTTGAATGACCGCCGTGCGGAGTGAACTCGCGATTGCGTCAACG
CCCGGTGCTATGTTGGAGTCGGCGTCGTGCTTTCGTGCTCATATCGGCTT
CGTATCCGTCCGACTGCCGTCGATTGTAAGTAACCAATGCTTGCCTGTCC
CGCGCACTTGTGTTAATATAGGCTCTCAGCAACATCCCCGTTGGAAGAGA
TGCGCGATGACAGCTCTCACACCATGATGTGTTTGTACATCTGGGATAGC
GGTGACGCGGAGTGGATTGTGACAAAAGGGAACGGGAGAGTAGTCTATAA
CGAAGAGATAGTCATCCTCGGCTGAGGTTAGCGTTTGCGCACTCCAAGAC
TTGTATATATATATCCATTTTTCTATACACCCGGTGCGGACTACGGCGAT
ATTTCTTGTTATGGAGAAGCCATGGCAAAATCTAGACGGGAGCCAAAAGG
GAAGCTTAACACAAGAAACGCAGGTAACCGGCAGGACTGATTGATAAAAT
GGGGAATTTCGAGCAATTCCAGGAACTAAATGAAATCTTCGCTGGGTGAT
GACGGTTACTGGTATGGTGCGTGTTCCTTGTCGTACACTCGAAGTGTGTA
GAGCGGACTGGTTGAGTATTGACATCGCTTGTCATTTCCATCATCGGTAG
CGTTCTTGTGCACTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3401:11478..17943-

>mRNA_H-paniculata_contig3401.9090.1 ID=mRNA_H-paniculata_contig3401.9090.1|Name=mRNA_H-paniculata_contig3401.9090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig3401:11478..17943- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGGGAGTGTAGACGGGGTTTACCTCGCGCTCGTCGGGGACGGACC
TGTGGGGCCTTTCCTATTGGAGCATCACGGGAGTTGGACCAATCGTGGGA
CGCGGAAAAGGAAGATGTGCGGGAGTGTAGACGGGGTTTACCTCGCGCTC
GTCGGGGACGGACCTGTGGGGCCTTTCCTATTGGAGCATCACGGGAGTTG
GACCAATCGTGGGACGCGGAAAAGGAAGGGTGGGATCTACTGTCAACTGG
GGTTTATGGGGCACGATGACCTGGCGCCAGTGTACGCCTCGGCTGACGTT
CACGTGTCCTGCAGCCAATTTGAAACGTTGGGGAACACGGTATTGGAAGC
TCACGCGTGCGGTACGACCGTGGTGCTCCCAAAGACACAGGGTTTCGTGG
ATACTGTGAATCATGAGGGTGGGATCTACTGTCAACTGGGGTTTATGGGG
CACGATGACCTGGCGCCAGTGTACGCCTCGGCTGACGTTCACGTGTCCTG
CAGCCAATTTGAAACGTTGGGGAACACGGTATTGGAAGCTCACGCGTGCG
GTACGACCGTGGTGCTCCCAAAGACACAGGGTTTCGTGGATACTGTGAAT
CATGAGGCGGATGGCTATCTATTCGATGCCATGCATCCCGCGGCAGGAGC
TGCCCACCTCGCGCATCTCCGCGATAACCGAGAGCTGTGTCGGACGATGG
GAGAGCGAGGGCGGGCGAAGGCGGATGGCTATCTATTCGATGCCATGCAT
CCCGCGGCAGGAGCTGCCCACCTCGCGCATCTCCGCGATAACCGAGAGCT
GTGTCGGACGATGGGAGAGCGAGGGCGGGCGAAGGTTCAGATGCAGTCAC
CAGAACGCGTTGCTCGAGACATGCTCGCCTGGTACCGCACAGTTTGCGGA
AAATATAGGGTTCAGATGCAGTCACCAGAACGCGTTGCTCGAGACATGCT
CGCCTGGTACCGCACAGTTTGCGGAAAATATAGGGCAGAGACACGAAGCA
AAACATGGGGCGTGTTCTGGAGCCGTCTATTTTCCGTGCTGACGTGCTGG
ATGCTGGTGCTGCTGGTGGAGGTGTTCTGGTTCACCTACAACTTGCCGCA
CGCCGCAATTAAGGCAAGCGCAGAGACACGAAGCAAAACATGGGGCGTGT
TCTGGAGCCGTCTATTTTCCGTGCTGACGTGCTGGATGCTGGTGCTGCTG
GTGGAGGTGTTCTGGTTCACCTACAACTTGCCGCACGCCGCAATTAAGGC
AAGCGACGTGTGCAAGTACTGCAGGTCTACAAGGAATGCCCTTGGCAACT
CGTCTTTCTTCAACAAGATCTCCAACACATACAAGGACGTGTGCAAGTAC
TGCAGGTCTACAAGGAATGCCCTTGGCAACTCGTCTTTCTTCAACAAGAT
CTCCAACACATACAAGGCTCTCAGCAACATCCCCGTTGGAAGAGATGCGC
GATGAGCTCTCAGCAACATCCCCGTTGGAAGAGATGCGCGATGA
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