mRNA_H-paniculata_contig34009.9088.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34009.9088.1
Unique NamemRNA_H-paniculata_contig34009.9088.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34009.9088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34009contigH-paniculata_contig34009:1718..2005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.052328-CDS-H-paniculata_contig34009:1717..19391622930050.052328-CDS-H-paniculata_contig34009:1717..1939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34009 1718..1939 -
1691481126.1029205-CDS-H-paniculata_contig34009:1717..19391691481126.1029205-CDS-H-paniculata_contig34009:1717..1939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34009 1718..1939 -
1622930050.069778-CDS-H-paniculata_contig34009:1948..20051622930050.069778-CDS-H-paniculata_contig34009:1948..2005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34009 1949..2005 -
1691481126.1117692-CDS-H-paniculata_contig34009:1948..20051691481126.1117692-CDS-H-paniculata_contig34009:1948..2005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34009 1949..2005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34009.9088.1prot_H-paniculata_contig34009.9088.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34009 1718..2005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34009.9088.1

>prot_H-paniculata_contig34009.9088.1 ID=prot_H-paniculata_contig34009.9088.1|Name=mRNA_H-paniculata_contig34009.9088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MTTGHTLLTPYASRALSQSSFGCQSLLSQWVVGHQCLPSNSSWLPPSYAH
YYLQGCCASAGRSTIYTTAVLLQLSTAPVKSTECRHGKRQSVS
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mRNA from alignment at H-paniculata_contig34009:1718..2005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34009.9088.1 ID=mRNA_H-paniculata_contig34009.9088.1|Name=mRNA_H-paniculata_contig34009.9088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at H-paniculata_contig34009:1718..2005- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACAGGTCACACACTGCTCACACCGTATGCTTCTCGTGCGCTCAG
TCAGTCAGTCAGTCAGTCATTCGGTTGTCAGTCTCTTCTCTCCCAGTGGG
TGGTTGGCCATCAGTGCCTTCCAAGCAATAGTAGCTGGCTGCCTCCATCT
TACGCTCACTATTATTTGCAAGGATGTTGTGCTTCTGCAGGTCGGTCTAC
CATATATACTACTGCTGTACTGTTACAGCTGTCCACTGCCCCCGTAAAGA
GTACAGAGTGCCGACATGGTAAGAGACAGTCAGTTAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig34009:1718..2005-

>mRNA_H-paniculata_contig34009.9088.1 ID=mRNA_H-paniculata_contig34009.9088.1|Name=mRNA_H-paniculata_contig34009.9088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig34009:1718..2005- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACAGGTCACACACTGCTCACACCGTATGCTTCTCGTGCGCTCAG
TCAGTCAATGACAACAGGTCACACACTGCTCACACCGTATGCTTCTCGTG
CGCTCAGTCAGTCATCATTCGGTTGTCAGTCTCTTCTCTCCCAGTGGGTG
GTTGGCCATCAGTGCCTTCCAAGCAATAGTAGCTGGCTGCCTCCATCTTA
CGCTCACTATTATTTGCAAGGATGTTGTGCTTCTGCAGGTCGGTCTACCA
TATATACTACTGCTGTACTGTTACAGCTGTCCACTGCCCCCGTAAAGAGT
ACAGAGTGCCGACATGGTAAGAGACAGTCAGTTAGTTCATTCGGTTGTCA
GTCTCTTCTCTCCCAGTGGGTGGTTGGCCATCAGTGCCTTCCAAGCAATA
GTAGCTGGCTGCCTCCATCTTACGCTCACTATTATTTGCAAGGATGTTGT
GCTTCTGCAGGTCGGTCTACCATATATACTACTGCTGTACTGTTACAGCT
GTCCACTGCCCCCGTAAAGAGTACAGAGTGCCGACATGGTAAGAGACAGT
CAGTTAGT
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