mRNA_H-paniculata_contig34007.9087.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34007.9087.1
Unique NamemRNA_H-paniculata_contig34007.9087.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Match: D7FIR4_ECTSI (Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR4_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 6.020e-53
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 2
Query:   92 TCSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC*VLYFIDISEQCGYTIKEQVVSLFESIKPLFANKQLLVIANKTDVAPFDKI 388
            T SLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC VLYFIDISEQCGYTIKEQV SLFESIKPLFANKQLLVIANKTDVAPF  I
Sbjct:  202 TKSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCCVLYFIDISEQCGYTIKEQV-SLFESIKPLFANKQLLVIANKTDVAPFADI 299          
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Match: A0A7S1GIK8_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIK8_CYCTE)

HSP 1 Score: 160 bits (406), Expect = 7.480e-48
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 2
Query:   98 SLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC*VLYFIDISEQCGYTIKEQVVSLFESIKPLFANKQLLVIANKTDVAPFDKI 388
            SL+VGH DYRYLRWQV+DTPGILDHPLEERNTIEMQA+TALAHL C VLYFIDISEQCGYTI +Q  SLF SI+PLFANKQL+V+ NK D  P+D +
Sbjct:    2 SLFVGHCDYRYLRWQVIDTPGILDHPLEERNTIEMQAITALAHLTCSVLYFIDISEQCGYTIDQQC-SLFHSIRPLFANKQLIVVVNKIDQQPWDTL 97          
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Match: A0A836CDN0_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN0_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.690e-47
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = 2
Query:   92 TCSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC*VLYFIDISEQCGYTIKEQVVSLFESIKPLFANKQLLVIANKTDVAPFDKI 388
            T SLYVGHMDYRYLRWQVVDTPGILDH LEERNTIEMQAVTALAHLQC VL+ IDISEQCGY I EQ+  LFESIKPLFANKQL+++ANKTDV PFD++
Sbjct:  202 TKSLYVGHMDYRYLRWQVVDTPGILDHALEERNTIEMQAVTALAHLQCCVLFMIDISEQCGYPIAEQL-RLFESIKPLFANKQLIIVANKTDVLPFDQV 299          
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Match: A0A7S2UXL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXL7_9STRA)

HSP 1 Score: 160 bits (404), Expect = 3.090e-47
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 2
Query:  113 HMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC*VLYFIDISEQCGYTIKEQVVSLFESIKPLFANKQLLVIANKTDVAPFDKI 388
            HMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC VL+FIDISEQCGYTI++QV SLFESI+PLFANKQL+++A K DV P + +
Sbjct:    1 HMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQCTVLFFIDISEQCGYTIEQQV-SLFESIRPLFANKQLMIVATKIDVMPLEDL 91          
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Match: A0A7S0K9Z4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K9Z4_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.280e-46
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 2
Query:   92 TCSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC*VLYFIDISEQCGYTIKEQVVSLFESIKPLFANKQLLVIANKTDVAPFDKI 388
            T SL+VGH DYRYLRWQV+DTPGILDHPLEERNTIEMQA+TALAHL C VL+FIDISEQCGYTI++QV SLF+SI+PLF NKQLL++ NK D  P++ +
Sbjct:   54 TKSLFVGHTDYRYLRWQVIDTPGILDHPLEERNTIEMQAITALAHLTCSVLFFIDISEQCGYTIEQQV-SLFKSIQPLFVNKQLLIVVNKIDQQPWNTL 151          
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Match: A0A7S2BZF7_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZF7_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.780e-46
Identity = 81/99 (81.82%), Postives = 90/99 (90.91%), Query Frame = 2
Query:   92 TCSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC*VLYFIDISEQCGYTIKEQVVSLFESIKPLFANKQLLVIANKTDVAPFDKI 388
            T SL+VGHMDYRYLRWQVVDTPGILDHPL+ERNTIEMQA+TALAHLQC VLYF+DISEQCG+TI +QV +LFE+IKPLFANKQLL+I NK DV  FD I
Sbjct:  204 TKSLFVGHMDYRYLRWQVVDTPGILDHPLDERNTIEMQAITALAHLQCCVLYFLDISEQCGFTIAQQV-ALFENIKPLFANKQLLLIVNKIDVVAFDAI 301          
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Match: A0A7S2KQ92_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KQ92_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.690e-44
Identity = 76/99 (76.77%), Postives = 88/99 (88.89%), Query Frame = 2
Query:   92 TCSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC*VLYFIDISEQCGYTIKEQVVSLFESIKPLFANKQLLVIANKTDVAPFDKI 388
            T SL+VGH DYRYLRWQV+DTPGILDHPLEERNTIEMQA+TALAHL C VL+F+DISEQCGYTI++QV SLF+SIKPLF NKQLL++ NK D  P+D +
Sbjct:  202 TKSLFVGHTDYRYLRWQVIDTPGILDHPLEERNTIEMQAITALAHLTCSVLFFVDISEQCGYTIEQQV-SLFKSIKPLFVNKQLLIVVNKIDQQPWDTL 299          
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Match: A0A7S1UNH0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNH0_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.870e-44
Identity = 73/99 (73.74%), Postives = 85/99 (85.86%), Query Frame = 2
Query:   92 TCSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC*VLYFIDISEQCGYTIKEQVVSLFESIKPLFANKQLLVIANKTDVAPFDKI 388
            T SL+VGH DYRYLRWQV+DTPGILDHPLEERNTIEMQA+TALAHL C VLYF+DISEQCGY I++Q  SLF SIKPLFANKQL+++ NK D   ++ +
Sbjct:   45 TKSLFVGHCDYRYLRWQVIDTPGILDHPLEERNTIEMQAITALAHLTCSVLYFVDISEQCGYPIEQQC-SLFRSIKPLFANKQLIIVVNKVDQQSWESL 142          
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Match: G8FN64_ANOAR (OBG-type G domain-containing protein (Fragment) n=9 Tax=gambiae species complex TaxID=44542 RepID=G8FN64_ANOAR)

HSP 1 Score: 152 bits (383), Expect = 5.110e-44
Identity = 68/97 (70.10%), Postives = 86/97 (88.66%), Query Frame = 2
Query:   98 SLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC*VLYFIDISEQCGYTIKEQVVSLFESIKPLFANKQLLVIANKTDVAPFDKI 388
            SLYVGHMDY+YLRWQV+DTPGILDHPLEERN IEMQA+TA+AHL+  ++Y +D+SEQCG++I+EQ   LF+SIKPLFANK L+++ NKTDV  FD++
Sbjct:    1 SLYVGHMDYKYLRWQVIDTPGILDHPLEERNVIEMQAITAMAHLRACIMYVMDVSEQCGHSIEEQA-KLFDSIKPLFANKPLVLVLNKTDVLKFDEL 96          
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Match: A0A1B6H4L5_9HEMI (OBG-type G domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6H4L5_9HEMI)

HSP 1 Score: 155 bits (392), Expect = 5.550e-44
Identity = 72/99 (72.73%), Postives = 87/99 (87.88%), Query Frame = 2
Query:   92 TCSLYVGHMDYRYLRWQVVDTPGILDHPLEERNTIEMQAVTALAHLQC*VLYFIDISEQCGYTIKEQVVSLFESIKPLFANKQLLVIANKTDVAPFDKI 388
            T SLYVGH DY+YLRWQV+DTPGILDHPLEERN IEMQAVTALAHL+  VLYF+D+SEQCG++++EQV SL+ SIKPLFANK L+V+ NKTD+   D++
Sbjct:   39 TKSLYVGHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAVTALAHLRAAVLYFLDVSEQCGHSLEEQV-SLYNSIKPLFANKPLMVVCNKTDIVKVDEL 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34007.9087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIR4_ECTSI6.020e-5394.95Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus... [more]
A0A7S1GIK8_CYCTE7.480e-4878.35Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A836CDN0_9STRA1.690e-4783.84Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema ... [more]
A0A7S2UXL7_9STRA3.090e-4782.61Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0K9Z4_9STRA1.280e-4675.76Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2BZF7_9STRA1.780e-4681.82Nucleolar GTP-binding protein 1 n=1 Tax=Dictyocha ... [more]
A0A7S2KQ92_9STRA2.690e-4476.77Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1UNH0_9STRA2.870e-4473.74Hypothetical protein (Fragment) n=2 Tax=Grammatoph... [more]
G8FN64_ANOAR5.110e-4470.10OBG-type G domain-containing protein (Fragment) n=... [more]
A0A1B6H4L5_9HEMI5.550e-4472.73OBG-type G domain-containing protein (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34007contigH-paniculata_contig34007:644..2368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size388
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34007.9087.1prot_H-paniculata_contig34007.9087.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34007 1312..2344 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.9539645-UTR-H-paniculata_contig34007:643..7361622930049.9539645-UTR-H-paniculata_contig34007:643..736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34007 644..736 -
1691481126.0630562-UTR-H-paniculata_contig34007:643..7361691481126.0630562-UTR-H-paniculata_contig34007:643..736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34007 644..736 -
1622930049.9654496-UTR-H-paniculata_contig34007:1280..13111622930049.9654496-UTR-H-paniculata_contig34007:1280..1311Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34007 1281..1311 -
1691481126.0719304-UTR-H-paniculata_contig34007:1280..13111691481126.0719304-UTR-H-paniculata_contig34007:1280..1311Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34007 1281..1311 -
1622930049.9980989-UTR-H-paniculata_contig34007:2344..23681622930049.9980989-UTR-H-paniculata_contig34007:2344..2368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34007 2345..2368 -
1691481126.0948079-UTR-H-paniculata_contig34007:2344..23681691481126.0948079-UTR-H-paniculata_contig34007:2344..2368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34007 2345..2368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.974811-CDS-H-paniculata_contig34007:1311..14331622930049.974811-CDS-H-paniculata_contig34007:1311..1433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34007 1312..1433 -
1691481126.0795984-CDS-H-paniculata_contig34007:1311..14331691481126.0795984-CDS-H-paniculata_contig34007:1311..1433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34007 1312..1433 -
1622930049.9858353-CDS-H-paniculata_contig34007:2226..23441622930049.9858353-CDS-H-paniculata_contig34007:2226..2344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34007 2227..2344 -
1691481126.087305-CDS-H-paniculata_contig34007:2226..23441691481126.087305-CDS-H-paniculata_contig34007:2226..2344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34007 2227..2344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34007.9087.1

>prot_H-paniculata_contig34007.9087.1 ID=prot_H-paniculata_contig34007.9087.1|Name=mRNA_H-paniculata_contig34007.9087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MQVTRAEVDVQPYAFTTKVAEVDVQPLRGTHGLPLPSMAGGGHSGHIGSP
FGREKYHRDAGSHGPGTPAVLSSLLHRHL*
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mRNA from alignment at H-paniculata_contig34007:644..2368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34007.9087.1 ID=mRNA_H-paniculata_contig34007.9087.1|Name=mRNA_H-paniculata_contig34007.9087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1725bp|location=Sequence derived from alignment at H-paniculata_contig34007:644..2368- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAACCATCATGGTTATATTCAATGCAGGTGACGCGTGCTGAGGTTGA CGTGCAGCCCTACGCATTCACCACGAAGGTAGCTGAGGTTGACGTGCAGC CTTTACGTGGGACACATGGACTACCGCTACCTTCGATGGCAGGTATGTAT GTGTCAGGCTCTAATGGTGAACGATCAACAGACAATTGGACACTGTGGTG ATGCCGAAAGAAGAGTTGGATGCAAGGCTTTTCGCGTAAACGGATTGCAA GGCTGTTCTTGGATTCGGATTGAAAAAAGCTGGTGCGCAAATCTTACCCG AGGATTCCTCTCAACGAGAACAGCACCGTCAGCAAATGGCGAATTTCCAC GTAAATACTCTCGAGATGAAAGAATATGTTTTGACAGTCTGGATGATAAT TTTAGGGCAAGCGTAGGGGTCACGAGTTAAAAAATGAAAACAAAGAATTT TCCGATTTCTCACCTACTTTTTTTTTTTCAGTCAAAATATTTCAAATATA TGACTGACGTTGCGTTACATAAAATTGAGTTCTTTGTTGTGAAATTGCAT GTGTAGAAATTTATTTCCTGTGAATAATAGCCGCAACGGGAAAAAACATG ATCTATTTCTGTTGTGACCAAAAGTAAAAACTTTTTTTTTTTTTTCCATG AAAATTGATGACTCTTTTAGTTGTAGGACACGATAGATACTCACAGGAAG GGCAGTTTTCACGTGTAGTACTAGTAGCAGTAGTAGGGCAGAGCTCTGTA GCTTTATGAATGGATCAACTGGTCATTTACCAATCGTCTTTGGCAAGTCA GGATTCTTGGAAAATGTTAGGAACGTTCCTAATGTATGATCTTGGAGTGA ATGTTGGTGTAAGGTTCAACTTTTTTGCCAATGTTTTTGTCGTCAGGTTC AAATCGTTTCATTACAATGACATGGAATTTTTCAGGTGGTGGACACTCCG GGCATATTGGATCACCCTTTGGAAGAGAGAAATACCATCGAGATGCAGGC AGTCACGGCCCTGGCACACCTGCAGTGCTGAGTTCTTTACTTCATCGACA TCTCTGAGCAATGCGGCTATACCATCAAAGAGCAGGTAGTGTACTTTTCT TGCATCCATGTATACCCTTTAAACCCCTCCCTCCTAAAGGGAAATAATTG CGGAAGATCGAAGGATCCCGGCAGAGGAATAAATAATTCTGTTCTGTTAA AGGAAATGTAGAAATACTTCGGTAAAATGCTCAAGTATGGAAGCATCGGA TAAAAGTTTTTGCCTCAGCCTTCCGCGGGTTAAAAAACAACCACAACGAA GGATGCGATAGAGGAGCATTGGAATGTTGGGATTGCCCCCAAAAGAAGGC TAAATGGATTCTAGTAAATACAAATTGGCCTCTACACGGGAGGGTTGTGA GGGTAGGTGGGACATACTTTGAGTTACATTTGGATAAGTAGAAAAGAGCG ATTGGCAACGCATTCGATTAAGGATGGTGTTTGTCTTGGTTGAGTCAATG AAGGAAGGCATTCACCTCGTTATCTGTTTCAGTGTTCGTTGTGGGATTTT TCTAATTTTTGGGTGATGATCCGCGATGGATCATACTGGGGTATATATGT CCTCTTTTTGTCTTTTTTTTGTCATTATCCAGGTATCGTTGTTCGAGAGC ATCAAGCCGCTGTTCGCGAACAAGCAGCTACTGGTCATCGCCAACAAGAC AGATGTGGCGCCGTTCGACAAAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig34007:644..2368-

>mRNA_H-paniculata_contig34007.9087.1 ID=mRNA_H-paniculata_contig34007.9087.1|Name=mRNA_H-paniculata_contig34007.9087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig34007:644..2368- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGTGACGCGTGCTGAGGTTGACGTGCAGCCCTACGCATTCACCAC
GAAGGTAGCTGAGGTTGACGTGCAGCCTTTACGTGGGACACATGGACTAC
CGCTACCTTCGATGGCAGATGCAGGTGACGCGTGCTGAGGTTGACGTGCA
GCCCTACGCATTCACCACGAAGGTAGCTGAGGTTGACGTGCAGCCTTTAC
GTGGGACACATGGACTACCGCTACCTTCGATGGCAGGTGGTGGACACTCC
GGGCATATTGGATCACCCTTTGGAAGAGAGAAATACCATCGAGATGCAGG
CAGTCACGGCCCTGGCACACCTGCAGTGCTGAGTTCTTTACTTCATCGAC
ATCTCTGAGTGGTGGACACTCCGGGCATATTGGATCACCCTTTGGAAGAG
AGAAATACCATCGAGATGCAGGCAGTCACGGCCCTGGCACACCTGCAGTG
CTGAGTTCTTTACTTCATCGACATCTCTGA
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