mRNA_H-paniculata_contig34003.9086.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34003.9086.1
Unique NamemRNA_H-paniculata_contig34003.9086.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34003.9086.1 vs. uniprot
Match: D8LQP3_ECTSI (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP3_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 5.570e-49
Identity = 76/103 (73.79%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:    1 RPPKDDSPILFKSHTPFFPSYNKPSLMPESTCMLLLLVRNPIDSYDAWDRYNLRQNVPVIRDYMPLWEGHLAHWIAAAGDIPIYVFRYEDMLANPENVLRRAL 309
            RPP   SPIL+KSHTPFFPSYNKPSLMPE TCML+LLVRNPID++DAW RY  ++++ V+R+Y+PLW+GHL+HW+AAAGDIPIYVFRYEDML   E VLRR L
Sbjct:  267 RPPNATSPILYKSHTPFFPSYNKPSLMPEETCMLVLLVRNPIDNHDAWQRYMYKKSI-VVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRIL 368
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BLAST of mRNA_H-paniculata_contig34003.9086.1 vs. uniprot
Match: A0A6H5KVH5_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH5_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.080e-48
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    1 RPPKDDSPILFKSHTPFFPSYNKPSLMPESTCMLLLLVRNPIDSYDAWDRYNLRQNVPVIRDYMPLWEGHLAHWIAAAGDIPIYVFRYEDMLANPENVLRRAL 309
            RPP   SPIL+KSHTPFFPSYNKPSLMPE TCML+LLVRNPID++DAW RY   +++ V+R+Y+PLW+GHL+HW+AAAGDIPIYVFRYEDML   E VLRR L
Sbjct:  267 RPPNATSPILYKSHTPFFPSYNKPSLMPEETCMLVLLVRNPIDNHDAWQRYMYHKSI-VVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRIL 368
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BLAST of mRNA_H-paniculata_contig34003.9086.1 vs. uniprot
Match: A0A6H5KN31_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN31_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.370e-48
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    1 RPPKDDSPILFKSHTPFFPSYNKPSLMPESTCMLLLLVRNPIDSYDAWDRYNLRQNVPVIRDYMPLWEGHLAHWIAAAGDIPIYVFRYEDMLANPENVLRRAL 309
            RPP   SPIL+KSHTPFFPSYNKPSLMPE TCML+LLVRNPID++DAW RY +    P +RDY+P+W+GHL+HW+AAAGDIPIYVFRYEDML   E VLRR L
Sbjct:  261 RPPNATSPILYKSHTPFFPSYNKPSLMPEDTCMLVLLVRNPIDNHDAWQRY-MAGKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRIL 362
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BLAST of mRNA_H-paniculata_contig34003.9086.1 vs. uniprot
Match: D8LQP4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP4_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.610e-45
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 RPPKDDSPILFKSHTPFFPSYNKPSLMPESTCMLLLLVRNPIDSYDAWDRYNLRQNVPVIRDYMPLWEGHLAHWIAAAGDIPIYVFRYEDMLANPENVLRRAL 309
            RPP   SPIL+KSHTPFFPSYNKPSLMPE TCML+LLVRNPID++DAW RY +      +RDY+P+W+GHL+HW+AAAGDIPIYVFRYEDML   E VLRR L
Sbjct:  996 RPPNATSPILYKSHTPFFPSYNKPSLMPEDTCMLVLLVRNPIDNHDAWQRY-MAGKAQCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLRRIL 1097
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BLAST of mRNA_H-paniculata_contig34003.9086.1 vs. uniprot
Match: A0A835YVS2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.770e-31
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    7 PKDDSPILFKSHTPFFPSYNKPSLMPESTCMLLLLVRNPIDSYDAWDRYNLRQNVPVIRDYMPLWEGHLAHWIAAAGDIPIYVFRYEDMLANPENVLRRAL 309
            P  D P+L KSHTPFFPSY++P+L P +TC +LL+VRNP+D++DAW RY      P+ R ++P+W GHL HW+A   D+PI  FRYED+L   + VL + L
Sbjct:  132 PAPDDPVLMKSHTPFFPSYDRPALDPGATCAVLLIVRNPLDAHDAWRRYAGGTAEPL-RKWLPVWAGHLTHWVADTRDLPIIAFRYEDLLWRADKVLEQVL 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34003.9086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LQP3_ECTSI5.570e-4973.79Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A6H5KVH5_9PHAE1.080e-4873.79Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A6H5KN31_9PHAE1.370e-4873.79Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D8LQP4_ECTSI2.610e-4572.82F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YVS2_9STRA3.770e-3152.48P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34003contigH-paniculata_contig34003:125..2157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue7.5e-41
Seed eggNOG ortholog2880.D8LQP3
Hectar predicted targeting categoryother localisation
EggNOG OGs2EZ9R@1,2T0MS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.3180232-CDS-H-paniculata_contig34003:124..2841622930049.3180232-CDS-H-paniculata_contig34003:124..284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34003 125..284 -
1691481126.0425894-CDS-H-paniculata_contig34003:124..2841691481126.0425894-CDS-H-paniculata_contig34003:124..284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34003 125..284 -
1622930049.8375115-CDS-H-paniculata_contig34003:2008..21571622930049.8375115-CDS-H-paniculata_contig34003:2008..2157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34003 2009..2157 -
1691481126.054975-CDS-H-paniculata_contig34003:2008..21571691481126.054975-CDS-H-paniculata_contig34003:2008..2157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34003 2009..2157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34003.9086.1prot_H-paniculata_contig34003.9086.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34003 125..2157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34003.9086.1

>prot_H-paniculata_contig34003.9086.1 ID=prot_H-paniculata_contig34003.9086.1|Name=mRNA_H-paniculata_contig34003.9086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
RPPKDDSPILFKSHTPFFPSYNKPSLMPESTCMLLLLVRNPIDSYDAWDR
YNLRQNVPVIRDYMPLWEGHLAHWIAAAGDIPIYVFRYEDMLANPENVLR
RAL
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mRNA from alignment at H-paniculata_contig34003:125..2157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34003.9086.1 ID=mRNA_H-paniculata_contig34003.9086.1|Name=mRNA_H-paniculata_contig34003.9086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2033bp|location=Sequence derived from alignment at H-paniculata_contig34003:125..2157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCTCCGAAGGACGATTCTCCGATTTTGTTCAAGAGCCACACGCCATT
TTTCCCTTCTTACAACAAGCCTAGCCTCATGCCCGAGTCTACGTGCATGT
TGCTGCTGCTCGTGCGCAATCCTATAGATAGTTACGACGCTTGGGACAGG
TGAGTGTGGTGTGGTGATGTGGTTTTGATTTTGTTTTTTTTACATGTCTT
GCCATTTTTTTGAAGCCTTGAGGGGGCTTTTACTCGCACGTCGAAAAAAT
TCTGTTTTCTATGATCTGCTTAGGGGGCATGTTGTTTTCAATGTAGTATG
ACGTTTATAATTATATAATGCTGGAAAATGGCAACACAGGCAGAGGATTA
TGTAGGTTAATTCGTCGGCAGATGTAGCTTTGGTCTTTTAGACGAACCGT
GGTTTGATTCGTTCGTAGAAGGCGACTGACTGACTCTGTGGCTTTTTGGA
AGAGTTCAGTCCCGAAGGGGTTGAGCAGGCTGCAGCACGTAATAAATAGT
TAGTGGTCAACGCTGACGGTTTCATGAAAGGTCGAGGGCGTTTGTCTGCG
TTTTTAACTACCGTAGATTACAGGGTATACCTTCCCCCCTAGTTTGGTCA
GTTTTGTGGATAATAACCAAATAAACTCAGCAGCTTGAAGATGGCGAACT
CACCTCCATTTTGTTTCATCGTTACTGTCATGTATTCTGCAGTAATTTAT
GGATATCTGTTTTGTACTTTTGGTGTGCTCTTAGCTCTATGGTACTTTTT
CCAAACCGTGTTTTTTTGTGTAGATGCCGTCCTGCTGTTGACGCTGTCCT
TAGCAGTTGATGCGTGTGGTTATGTTGCTATATAGTAGTTGGTGGTGGAA
TTCCTGTTCCTACATGGAGTGTGTTACTGATTGTCTTGTAGTAACCGCTG
CGTGGTGTCGCTATCATTTATCATGTATGCAGATTTTAGTAAGCCTCGAA
CATCTTACGCATACCAAGATCAATCCGATCTATTTGTTTACCCGCATGTA
GTAGTCGTAGCAGCGGTGGGAGTGCGATGGGAGCGATATGGGAACAAGTA
CTTGTTTGTGTGTAGCACCCGTGGCCAAGAGGACACCAATCCTTGACAAT
AGCGCCGGCCTGCACGCTAGCTAGCAACTCTATACTTACTTATACTGTAT
GTTTTTTTGTTTTTTTTGTGCTTACCACGCTCAATTCCATTCATCAGTTA
ACCTGCATATAGTAGTGGTAGCGCTGGGAGCCCCCGCCCCCAGGCGGATA
ACAGTTGGGACATGGTCACCGGGGGGCGGGGGGGGGAGGGGAAGTAGTTG
GCCGGGGGCATACTCTGTATCATTTATAGTGGTGAAAAATGTATATGGAC
AAAAAGGTGAAACGCACGGATGCGGCCTGGTGATAAGAAACCAATAAGGA
AGAAAGTCAGGCTTCACTTTTTTTTTTTTTTAAATTACAAATCCCCCAAA
AATTGGTTACTCAACTGGATGCCCCAACGCTCATTCCTATATATTTACTA
CAAGAGAATCATATTCGAGCAAGGCCACATGATGATATTTGGGCCTTCGT
GCAAATCAGACTTCCTTATCAATGGGCCTTATCTGTAATTTTTCATCACC
GGAGGTAGTATTTTTGGGGGGGGGGGTGGTATTCTCCGTCATGGTGTTAA
TACCGCTGTAAACGGCGGCATCGTCACGATGGCCCTGTGTATGAAGTCTA
TGGAATCCATTTGTATTTTAGTTCTTCAATGTTTTGTTCTGGTTTCTTTC
GGCCCCGTTTTTTTCGCTCATTTTGACACACAAACAACTAACATACGTTT
TTTTTGAGTTTTTATTTGCTTCTTTTTTTTTTTTTTAGTTGAAGAATTTT
TTTTGCTGATGCTGACGGGGCAGGTATAACCTGCGCCAAAACGTCCCTGT
AATCCGAGACTACATGCCGCTCTGGGAAGGTCATCTCGCTCACTGGATTG
CGGCTGCGGGTGATATCCCAATCTACGTTTTCCGATACGAAGATATGCTT
GCCAACCCGGAAAACGTACTCAGGCGAGCTTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig34003:125..2157-

>mRNA_H-paniculata_contig34003.9086.1 ID=mRNA_H-paniculata_contig34003.9086.1|Name=mRNA_H-paniculata_contig34003.9086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig34003:125..2157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCTCCGAAGGACGATTCTCCGATTTTGTTCAAGAGCCACACGCCATT
TTTCCCTTCTTACAACAAGCCTAGCCTCATGCCCGAGTCTACGTGCATGT
TGCTGCTGCTCGTGCGCAATCCTATAGATAGTTACGACGCTTGGGACAGA
GGCCTCCGAAGGACGATTCTCCGATTTTGTTCAAGAGCCACACGCCATTT
TTCCCTTCTTACAACAAGCCTAGCCTCATGCCCGAGTCTACGTGCATGTT
GCTGCTGCTCGTGCGCAATCCTATAGATAGTTACGACGCTTGGGACAGGT
ATAACCTGCGCCAAAACGTCCCTGTAATCCGAGACTACATGCCGCTCTGG
GAAGGTCATCTCGCTCACTGGATTGCGGCTGCGGGTGATATCCCAATCTA
CGTTTTCCGATACGAAGATATGCTTGCCAACCCGGAAAACGTACTCAGGC
GAGCTTTAGTATAACCTGCGCCAAAACGTCCCTGTAATCCGAGACTACAT
GCCGCTCTGGGAAGGTCATCTCGCTCACTGGATTGCGGCTGCGGGTGATA
TCCCAATCTACGTTTTCCGATACGAAGATATGCTTGCCAACCCGGAAAAC
GTACTCAGGCGAGCTTTA
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