mRNA_H-paniculata_contig3400.9085.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3400.9085.1
Unique NamemRNA_H-paniculata_contig3400.9085.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3400.9085.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.890e-11
Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:   37 VPSPAPCFMKKRLTIEATDPEITLPAGHKREGWVALRAKHLRATNSYEERSMLADGSGQAQELCQVFSIKVDDIELRSS 273
            +P P P   KK L I+A D E+ LPAGH    WV   AK L ATNSY  R M  D      E CQV+SI +D + +RSS
Sbjct: 1734 LPPPPPALNKKSLRIKAFDAEVRLPAGHAGASWVTFDAKTLTATNSYGTRRM-GDVPSAKPETCQVWSINLDGLGIRSS 1811
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BLAST of mRNA_H-paniculata_contig3400.9085.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.940e-6
Identity = 36/87 (41.38%), Postives = 42/87 (48.28%), Query Frame = 1 
Query:   64 KKRLTIEATDPEITLPAGHKREGWVALRAKHLRATN-----------------SYEERSMLADGSGQAQELCQVFSIKVDDIELRSS 273
            KK L I+A D E+ LPAGH    WV   AK L ATN                 SY  R M  D S    E CQV+SI +D + +RSS
Sbjct: 1045 KKSLRIKALDAEVRLPAGHAGSSWVTFDAKTLTATNRVAHHAPNDARLAGRSNSYGTRRM-GDISSAKPETCQVWSIALDGVGIRSS 1130
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3400.9085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF5_ECTSI1.890e-1148.10FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYL2_9PHAE1.940e-641.38FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3400contigH-paniculata_contig3400:15078..15551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog2880.D7FMF5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size283
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.2609696-CDS-H-paniculata_contig3400:15079..151851622930049.2609696-CDS-H-paniculata_contig3400:15079..15185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 15080..15185 -
1691481126.0196617-CDS-H-paniculata_contig3400:15079..151851691481126.0196617-CDS-H-paniculata_contig3400:15079..15185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 15080..15185 -
1622930049.2801754-CDS-H-paniculata_contig3400:15378..155511622930049.2801754-CDS-H-paniculata_contig3400:15378..15551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 15379..15551 -
1691481126.0317194-CDS-H-paniculata_contig3400:15378..155511691481126.0317194-CDS-H-paniculata_contig3400:15378..15551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 15379..15551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3400.9085.1prot_H-paniculata_contig3400.9085.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3400 15080..15551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3400.9085.1

>prot_H-paniculata_contig3400.9085.1 ID=prot_H-paniculata_contig3400.9085.1|Name=mRNA_H-paniculata_contig3400.9085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
SIDSSVGASTAAVPSPAPCFMKKRLTIEATDPEITLPAGHKREGWVALRA
KHLRATNSYEERSMLADGSGQAQELCQVFSIKVDDIELRSSCT
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mRNA from alignment at H-paniculata_contig3400:15078..15551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3400.9085.1 ID=mRNA_H-paniculata_contig3400.9085.1|Name=mRNA_H-paniculata_contig3400.9085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at H-paniculata_contig3400:15078..15551- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCATCGACAGCAGCGTAGGAGCGAGCACTGCCGCCGTGCCATCCCCGGC
CCCGTGTTTCATGAAGAAACGCCTGACCATTGAAGCTACAGACCCGGAAA
TAACTCTTCCTGCAGGGCATAAGCGAGAAGGCTGGGTTGCCCTCCGAGCG
AAACATTTGCGTGCAACAAACAGGTGTTCGTCTATTTTGTCGGGGCGGGT
ATCAATTGTTCATTCTTCTGTTTAATTGCTCGGTGTGTGATTGTGCTTTT
GGCGGTTGTTTAAACTATTTGTTGATACTTATGTTTGTCCTCTCTTGCTT
CTCGTTGTCCCTGCGATGCTGAATACTGCGTGCTCACATTTTCATCACCA
ATGGAAATCGTCGCAGCTACGAAGAACGAAGCATGCTGGCCGACGGCAGC
GGACAAGCGCAAGAGCTATGTCAAGTCTTCTCGATCAAGGTGGACGACAT
TGAGCTGCGGTCGTCGTGTACCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3400:15078..15551-

>mRNA_H-paniculata_contig3400.9085.1 ID=mRNA_H-paniculata_contig3400.9085.1|Name=mRNA_H-paniculata_contig3400.9085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig3400:15078..15551- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCATCGACAGCAGCGTAGGAGCGAGCACTGCCGCCGTGCCATCCCCGGC
CCCGTGTTTCATGAAGAAACGCCTGACCATTGAAGCTACAGACCCGGAAA
TAACTCTTCCTGCAGGGCATAAGCGAGAAGGCTGGGTTGCCCTCCGAGCG
AAACATTTGCGTGCAACAAACAGAGCATCGACAGCAGCGTAGGAGCGAGC
ACTGCCGCCGTGCCATCCCCGGCCCCGTGTTTCATGAAGAAACGCCTGAC
CATTGAAGCTACAGACCCGGAAATAACTCTTCCTGCAGGGCATAAGCGAG
AAGGCTGGGTTGCCCTCCGAGCGAAACATTTGCGTGCAACAAACAGCTAC
GAAGAACGAAGCATGCTGGCCGACGGCAGCGGACAAGCGCAAGAGCTATG
TCAAGTCTTCTCGATCAAGGTGGACGACATTGAGCTGCGGTCGTCGTGTA
CCCTACGAAGAACGAAGCATGCTGGCCGACGGCAGCGGACAAGCGCAAGA
GCTATGTCAAGTCTTCTCGATCAAGGTGGACGACATTGAGCTGCGGTCGT
CGTGTACC
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