mRNA_H-paniculata_contig3400.9083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3400.9083.1
Unique NamemRNA_H-paniculata_contig3400.9083.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3400.9083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3400contigH-paniculata_contig3400:8376..9654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size465
Cds size465
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.0789614-CDS-H-paniculata_contig3400:8375..87721622930049.0789614-CDS-H-paniculata_contig3400:8375..8772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 8376..8772 -
1691481125.931921-CDS-H-paniculata_contig3400:8375..87721691481125.931921-CDS-H-paniculata_contig3400:8375..8772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 8376..8772 -
1622930049.0997005-CDS-H-paniculata_contig3400:9586..96541622930049.0997005-CDS-H-paniculata_contig3400:9586..9654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 9587..9654 -
1691481125.9424434-CDS-H-paniculata_contig3400:9586..96541691481125.9424434-CDS-H-paniculata_contig3400:9586..9654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 9587..9654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3400.9083.1prot_H-paniculata_contig3400.9083.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3400 8376..9654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3400.9083.1

>prot_H-paniculata_contig3400.9083.1 ID=prot_H-paniculata_contig3400.9083.1|Name=mRNA_H-paniculata_contig3400.9083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MTTALFLEGHWAKELHAAGSMPMIKLNANNTTYSETAATGQASTENVEDM
QRFPRNTSITSCEVRAVEVFSRPLRQRSGNEQDVSPYSRLDAATSTIPRG
TAAAAAATATTSVWQTVLEETSGNVWHAVAPPATAPASRHDTTISCPSKK
SGIVA
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mRNA from alignment at H-paniculata_contig3400:8376..9654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3400.9083.1 ID=mRNA_H-paniculata_contig3400.9083.1|Name=mRNA_H-paniculata_contig3400.9083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1279bp|location=Sequence derived from alignment at H-paniculata_contig3400:8376..9654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCACTGCGTTATTTCTCGAAGGGCATTGGGCGAAGGAGCTTCATGC
GGCGGGGTCGATGCCGATGTGGGTTGCGTTTTCCCTCTAGTTGTGTCGTA
GTTCTACTGCGATGTTATATTCCTGCGTGCTTGTCTTTTTGTAGGTTTCG
ATTCAGGTTCCTCAAATGTATTGGTTGTCTTCGCCCTCAATACTCGGTTT
GCTGTAAGGAGGTCTCAGTGGGTATTTTTGCAAAATGTACACAGAAGTGC
TCTTTCTGTCTTTCGTGGCCTTATTTTTTCGAGAGGAGGGGGGAAAGAGG
TAATTTCATTTATTTTTGCGATTATTGCACGTGGTTCCTTTGTTTGGCTT
TCGCTCGCCATCTGCAACACCGCAGACCATTGACAGGAGGTATCATGCTG
TTGTCGACTTAAGCTGTCGGGCTGAGTGGCATTTCAGAGTTTTGAACAAT
CGGCTCACATGCTCCCGTCTCCACAGTTACTCGTTTTTTCAGCTTATGTT
TTCGGATATCAATACTGCACTGCACGGGACCTACACGTACCCCCCCAACT
TGCATCCATGACATTAGCGTCTTCGTCACCTTGGTGAGAAATGTTAACGT
ATTTAGTGCGAAGTTTTGAACATGCTGCATCTCGGCCAAAACTCTTCCGG
GCTGCTAACGTACAACGTTATCGTGTGCATCCCATTCGCGTTGGCGTTGT
GTGAGAGTGGTCTCAATTTCAGCCCGCAATGGTTGCTCCTCTGCTCCGCA
TAGACTTGCGCGAAACAGTTGTCACGAGACGAATTGCGACCATTTCATGT
CCCAACAGTAGCGCTGCACATTTACTTCCTCGTTTGTGCCCCCTAACTCA
CCCTCTTCCATCCCCGCATCTCGAATTATCAGGATCAAGTTGAATGCCAA
CAATACCACCTACAGTGAAACCGCTGCAACAGGCCAGGCGAGCACTGAGA
ATGTCGAAGATATGCAGCGTTTTCCTCGAAATACGTCTATAACCTCCTGT
GAGGTGAGAGCCGTGGAGGTATTCTCCAGGCCTTTGCGGCAGCGGTCAGG
GAACGAGCAGGACGTTTCGCCGTATTCCAGGCTCGACGCGGCAACGTCAA
CGATCCCCCGCGGCACCGCCGCCGCCGCCGCTGCCACTGCCACCACATCC
GTGTGGCAAACCGTACTTGAAGAGACATCTGGAAACGTGTGGCACGCTGT
TGCCCCGCCTGCGACGGCTCCTGCTAGTCGCCACGATACCACCATATCAT
GTCCATCGAAGAAGTCGGGGATTGTCGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig3400:8376..9654-

>mRNA_H-paniculata_contig3400.9083.1 ID=mRNA_H-paniculata_contig3400.9083.1|Name=mRNA_H-paniculata_contig3400.9083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig3400:8376..9654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCACTGCGTTATTTCTCGAAGGGCATTGGGCGAAGGAGCTTCATGC
GGCGGGGTCGATGCCGATATGACCACTGCGTTATTTCTCGAAGGGCATTG
GGCGAAGGAGCTTCATGCGGCGGGGTCGATGCCGATGATCAAGTTGAATG
CCAACAATACCACCTACAGTGAAACCGCTGCAACAGGCCAGGCGAGCACT
GAGAATGTCGAAGATATGCAGCGTTTTCCTCGAAATACGTCTATAACCTC
CTGTGAGGTGAGAGCCGTGGAGGTATTCTCCAGGCCTTTGCGGCAGCGGT
CAGGGAACGAGCAGGACGTTTCGCCGTATTCCAGGCTCGACGCGGCAACG
TCAACGATCCCCCGCGGCACCGCCGCCGCCGCCGCTGCCACTGCCACCAC
ATCCGTGTGGCAAACCGTACTTGAAGAGACATCTGGAAACGTGTGGCACG
CTGTTGCCCCGCCTGCGACGGCTCCTGCTAGTCGCCACGATACCACCATA
TCATGTCCATCGAAGAAGTCGGGGATTGTCGCTGATCAAGTTGAATGCCA
ACAATACCACCTACAGTGAAACCGCTGCAACAGGCCAGGCGAGCACTGAG
AATGTCGAAGATATGCAGCGTTTTCCTCGAAATACGTCTATAACCTCCTG
TGAGGTGAGAGCCGTGGAGGTATTCTCCAGGCCTTTGCGGCAGCGGTCAG
GGAACGAGCAGGACGTTTCGCCGTATTCCAGGCTCGACGCGGCAACGTCA
ACGATCCCCCGCGGCACCGCCGCCGCCGCCGCTGCCACTGCCACCACATC
CGTGTGGCAAACCGTACTTGAAGAGACATCTGGAAACGTGTGGCACGCTG
TTGCCCCGCCTGCGACGGCTCCTGCTAGTCGCCACGATACCACCATATCA
TGTCCATCGAAGAAGTCGGGGATTGTCGCT
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