mRNA_H-paniculata_contig3399.9073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3399.9073.1
Unique NamemRNA_H-paniculata_contig3399.9073.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3399.9073.1 vs. uniprot
Match: D8LTG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG5_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.520e-38
Identity = 77/143 (53.85%), Postives = 95/143 (66.43%), Query Frame = 1 
Query:    1 MHSVIRLAARTTSGRGG-------NGISRL----ISEALLVKGENLELTVTSAVRSMDAHLAVAPLQWICLVCLSSLHSLDARVSDLFIARNGCRLLQRCLLVNARHTGVIEQGCRLVAGMSERSFTSRTRFFVEKIPDTVHE 396
            MHSVIR+A R  S +         +G  RL    +SEAL  +G  L+   +   + MD H AVAPL WICLVCL  LH+L+ARVSD+FI   GC++L RC+ +NARHT V+EQ CR+VA MSE SFTSRTRF VE I D +HE
Sbjct:    1 MHSVIRIARREQSPKDPPAGHVTKDGPERLSDNRVSEALH-RGNKLDQQASLLAQVMDVHQAVAPLLWICLVCLIDLHALEARVSDIFIINAGCQVLHRCIRINARHTAVVEQVCRVVAVMSEPSFTSRTRFMVENIQDAIHE 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3399.9073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTG5_ECTSI1.520e-3853.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3399contigH-paniculata_contig3399:9630..10471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005530.1
Exons2
Model size405
Cds size405
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.7732627-CDS-H-paniculata_contig3399:9629..98921622930047.7732627-CDS-H-paniculata_contig3399:9629..9892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3399 9630..9892 +
1691481125.2871788-CDS-H-paniculata_contig3399:9629..98921691481125.2871788-CDS-H-paniculata_contig3399:9629..9892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3399 9630..9892 +
1622930047.80605-CDS-H-paniculata_contig3399:10329..104711622930047.80605-CDS-H-paniculata_contig3399:10329..10471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3399 10330..10471 +
1691481125.3040557-CDS-H-paniculata_contig3399:10329..104711691481125.3040557-CDS-H-paniculata_contig3399:10329..10471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3399 10330..10471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3399.9073.1prot_H-paniculata_contig3399.9073.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3399 9630..10471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3399.9073.1

>prot_H-paniculata_contig3399.9073.1 ID=prot_H-paniculata_contig3399.9073.1|Name=mRNA_H-paniculata_contig3399.9073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MHSVIRLAARTTSGRGGNGISRLISEALLVKGENLELTVTSAVRSMDAHL
AVAPLQWICLVCLSSLHSLDARVSDLFIARNGCRLLQRCLLVNARHTGVI
EQGCRLVAGMSERSFTSRTRFFVEKIPDTVHEVR*
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mRNA from alignment at H-paniculata_contig3399:9630..10471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3399.9073.1 ID=mRNA_H-paniculata_contig3399.9073.1|Name=mRNA_H-paniculata_contig3399.9073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at H-paniculata_contig3399:9630..10471+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTCGGTCATCCGCCTGGCCGCTCGAACTACTAGTGGAAGGGGCGG
TAACGGAATCAGTCGCCTCATTTCGGAAGCGCTTCTAGTCAAAGGTGAAA
ACCTCGAGCTGACCGTGACGTCAGCCGTTCGGTCGATGGACGCTCATTTG
GCGGTGGCGCCTTTGCAGTGGATTTGCTTGGTGTGCCTGTCCAGTCTCCA
CTCCCTGGATGCGCGCGTGTCCGATTTATTCATCGCCCGCAACGGGTGCC
GACTTCTTCAAAGGTACGCATGCATAGGAAAAACCGTACACAAGTACACA
TACGAATTATATATACATGTGAAAATGGAAGCATAACGCTATTCAGTCGA
CGTCTGATAGAATCAAAATTGTAAGTATAAATACCCCATCTATATGTCCA
TGTGCCCAATACGTTTTGGGAAGGTATACGTCGGTCGTCTGTATAAATTG
CATGCATTGTTGATTGGAGTGCCTGAGGAAGCGTGTGGGGTTGCTGACGT
GCTTCTGAAGATTGTCTTACACCTGGCGACAGCATATCTTGTCTAGATCT
CTAGTGAAGTAGACTGAAATAAACATTGATGACTCATCGTTTTATGTGCA
CTTCGTCCAGGTGTGCAGTCCAACTCGGCAAAAAAAGGAGCACCGCTGTC
TCGTGATAACCCTTCCCCTTAGGTGAAAAACGCTTTCTGCCTCCTGTCAG
GTGTCTGCTCGTGAACGCTCGACACACGGGTGTGATCGAGCAAGGTTGCC
GTCTGGTGGCAGGAATGAGCGAGCGTAGCTTTACTTCGCGTACCAGGTTC
TTCGTCGAGAAGATACCAGACACCGTTCACGAGGTGAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3399:9630..10471+

>mRNA_H-paniculata_contig3399.9073.1 ID=mRNA_H-paniculata_contig3399.9073.1|Name=mRNA_H-paniculata_contig3399.9073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig3399:9630..10471+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTCGGTCATCCGCCTGGCCGCTCGAACTACTAGTGGAAGGGGCGG
TAACGGAATCAGTCGCCTCATTTCGGAAGCGCTTCTAGTCAAAGGTGAAA
ACCTCGAGCTGACCGTGACGTCAGCCGTTCGGTCGATGGACGCTCATTTG
GCGGTGGCGCCTTTGCAGTGGATTTGCTTGGTGTGCCTGTCCAGTCTCCA
CTCCCTGGATGCGCGCGTGTCCGATTTATTCATCGCCCGCAACGGGTGCC
GACTTCTTCAAAGATGCACTCGGTCATCCGCCTGGCCGCTCGAACTACTA
GTGGAAGGGGCGGTAACGGAATCAGTCGCCTCATTTCGGAAGCGCTTCTA
GTCAAAGGTGAAAACCTCGAGCTGACCGTGACGTCAGCCGTTCGGTCGAT
GGACGCTCATTTGGCGGTGGCGCCTTTGCAGTGGATTTGCTTGGTGTGCC
TGTCCAGTCTCCACTCCCTGGATGCGCGCGTGTCCGATTTATTCATCGCC
CGCAACGGGTGCCGACTTCTTCAAAGGTGTCTGCTCGTGAACGCTCGACA
CACGGGTGTGATCGAGCAAGGTTGCCGTCTGGTGGCAGGAATGAGCGAGC
GTAGCTTTACTTCGCGTACCAGGTTCTTCGTCGAGAAGATACCAGACACC
GTTCACGAGGTGAGGTGAGTGTCTGCTCGTGAACGCTCGACACACGGGTG
TGATCGAGCAAGGTTGCCGTCTGGTGGCAGGAATGAGCGAGCGTAGCTTT
ACTTCGCGTACCAGGTTCTTCGTCGAGAAGATACCAGACACCGTTCACGA
GGTGAGGTGA
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