mRNA_H-paniculata_contig3397.9070.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3397.9070.1
Unique NamemRNA_H-paniculata_contig3397.9070.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3397.9070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3397contigH-paniculata_contig3397:10269..15288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size748
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3397.9070.1prot_H-paniculata_contig3397.9070.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3397 10270..15288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.5563982-CDS-H-paniculata_contig3397:10269..105721622930047.5563982-CDS-H-paniculata_contig3397:10269..10572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 10270..10572 -
1691481125.2001362-CDS-H-paniculata_contig3397:10269..105721691481125.2001362-CDS-H-paniculata_contig3397:10269..10572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 10270..10572 -
1622930047.5692787-CDS-H-paniculata_contig3397:11709..118131622930047.5692787-CDS-H-paniculata_contig3397:11709..11813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 11710..11813 -
1691481125.2106202-CDS-H-paniculata_contig3397:11709..118131691481125.2106202-CDS-H-paniculata_contig3397:11709..11813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 11710..11813 -
1622930047.5832176-CDS-H-paniculata_contig3397:12797..129901622930047.5832176-CDS-H-paniculata_contig3397:12797..12990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 12798..12990 -
1691481125.2203064-CDS-H-paniculata_contig3397:12797..129901691481125.2203064-CDS-H-paniculata_contig3397:12797..12990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 12798..12990 -
1622930047.5959961-CDS-H-paniculata_contig3397:15141..152881622930047.5959961-CDS-H-paniculata_contig3397:15141..15288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 15142..15288 -
1691481125.228294-CDS-H-paniculata_contig3397:15141..152881691481125.228294-CDS-H-paniculata_contig3397:15141..15288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 15142..15288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3397.9070.1

>prot_H-paniculata_contig3397.9070.1 ID=prot_H-paniculata_contig3397.9070.1|Name=mRNA_H-paniculata_contig3397.9070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
RYNIFDEAIAEVLNVMEVNFKADFERSMEYRRLNRAVEREAKELSVLRQA
KLVAGTKNAEREAARRPTPYGSTRSSWPTPREHVRGVSELSLDNSDSAGN
AVGLMEEGFSATGGVHPAEGSGTGCDIFEARGTEQGGGSGDTSGRSLARQ
RSPALCNSAPAAPPTSTAARTIWSLSARSRKKPPAKDLNSFSSGQDTAIA
TVHGAATDMPAPMPSPFFTSSPRLRRHPSSTSFTSSKSASSESSNIGGE
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mRNA from alignment at H-paniculata_contig3397:10269..15288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3397.9070.1 ID=mRNA_H-paniculata_contig3397.9070.1|Name=mRNA_H-paniculata_contig3397.9070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5020bp|location=Sequence derived from alignment at H-paniculata_contig3397:10269..15288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACAACATTTTCGACGAAGCCATTGCCGAGGTGTTGAACGTGATGGA
GGTCAATTTCAAGGCGGATTTCGAGCGTAGCATGGAGTATCGGAGGCTTA
ATAGGGCTGTGGAGAGAGAAGCCAAGGAACTGTCTGTTCTGCGACAGGTG
GGGTTTTGAGGCGCGCGCGGGGGCGGGGGGGAATGAATAGGGGAGAATAA
TTCCCCCCATTCACCCTGTGGGATTTTCATTCCTATGTCAACACACTGGC
GACAGTTCGTAGAGCTATAGCTCTAATCCTCAAGTAATAACTCTACCGTA
CCCATGTTGAGGTTATGCAGCACCTGACCTCGATTTTCAGATATGTGCAT
TCATCAGCAAATTAGATCAATAATGGGCGGGAGAGGATGTTCTATTTTTC
CCCTTGCAACAGAACCTCCTACGTCATGCATAGGTGCCAGCGTGTGACAT
AATAAACACGCCCCTCCCTTTCACCCGCCCTCCTTTCTTTTCCTTGTTTA
GCGCTCTACCAATAGTTTGTCAACTGATTAGGACGGCACGGTTCGAAGCT
GGCAGTGTGCATTGGTTGAACATGAATAACCCAAGTTGTTGTCGCAGCCA
ACCTACGGTCGCATCTTATGGGCGTCAAAACAATTATCGTCGCAAAACCC
GATTGTTGGACGTTTGCTGACGCTTTTGTCCCAGGAAACGCGGCCATCGA
TCCACATCCCTTGTGAGCTGCTCGTTACCTCACTGAGAGGAATCCAAACC
CCACTCTTTCGTTCCACCACGCGTTAATTTAGTTGTCGCAAATGCCCTTT
GCTAAGAAATCGAGCAAGGAAAAAAAGTTAGGCACGTCCTTAATTCAAAT
GTTTTCACACGATTTTTTGAGGCGTTGAAAACAAGCCTCACCTTGGTTTT
TGTGTGATGATACATGGGTGTAGAAAATACCCGGCTTTAATGCACGATAA
CAATCAAGCTTGCGACGTCCGTAAGATGAGGCCTAGACGCCAGCATAATA
TTTCACACATGAAACGACAAACTAGTCGTCTGAAATGACTCATTAAGCGA
TGGTACCCCCTTGAAACCAAAAACCTGGTCCCCCGCAGGTGTCGAGCTGA
ACAAGGGATCGGCTGTAACATACTATATTTTCATGCATGCACACAGTCCG
AAAGCGTTAAATATAACCAGGGTCGCAGAGGCAGGGAGCTTCGTTTTCGA
TGAGGGTAAAGAGGTCTCAATTAGTCGTTTCAGGTAACAAATTAGTCGTT
GTATGTGTGTCATATTTAGCCCAATTACATGAAGGGTGAAGGACAGATTC
AGGTAGACCTGGGCAATGTCCGGCCAGAAACAGGTATAATGTCAATGAAC
TCTATAGCGCCGCCGATATACAGGCACCTGATTGGCAGAGACAGCCTCGT
ATCTGACTGTGGCCGAAATACACTCCAGTGCACCTGGAATTTTCTGCTTT
TCTCTACCGCTTACACCTGGACGTCGGCAGTTACCTGAAACTGGCCAAAG
TTATACCTGAAATCACAACCAATACCTGAAACACTGGGATTATGTGCACC
GGCATCTCCTTCTCCCTCTTCCCTCCCCAAAATTGCCAGTGGCAGCTCGT
ACCATTTGCTCGACTCTTCGTCAACCTGATCTCCAACGCCCATCCACATG
CGGCATGCATCCTGAAGTACTTTGTGGGAAAAATAATGTTCGACGCCACC
AAATAGCCACCTAAATCACACCGAGACAGGCATATACATGCATGTTGGGG
ATCCAAGAATGACATCAGCCCGTTACCCAACCCATCGAACAGTCAAGAAC
ACCACCTCACCGTAGGTCAAGATCATGTGCTGTGTAGCAGAAAAGATTGT
AAAGGGTTGCTAGGCACCATGGCGGAATTCGTGCTGGTTGAGAGAGAGAA
GTCAAAGACTTGGTGACACTCAATCGTTAAAAGCTGACGTAGCGCGTGAG
CTGCTGCACGATGGCAAAAGCGTCAGGTGTCGAAATGGTGATAGCAAACG
GAAACAGATCTCTTGTAGCACTTGTACAACGTAGGTTGTGGATGCAACAA
AGCTGCAGACGGAGGGGGGTGTTTGGAACATCAGCAGCGCCAACAAGGAA
CACGTCAATTGCACAGGTGACAGCACCGCTGCTATTATTGCCAACATCGC
CCCAACGTTAGACGGCTACTCAACATGACGGCACCCGCTCTGAAGCGGAT
GGTCAAAAGTTCAGTGGGCATTTTGCCCTTTCATTAATGAATAAAATAAT
GACTACAACAATTTTTTACTGTCATCGACTTGATTGATTTACACGCAGGC
AAAGCTTGTGGCAGGGACTAAAAATGCCGAGAGAGAAGCAGCTCGTCGAC
CCACGCCTTATGGGAGCACCAGAAGCAGCTGGCCCACGCCCCGGGAACAC
GTTCGAGGTGTTTCCGAGTTGTCGCTGGACAACAGCGACAGCGCTGGCAA
TGCGGTGGGCTTGATGGAGGAGGGGTTCTCGGCGACTGGTGGTGAGTCGT
TCAACGGTTAATGCAAGAAAGAAATATACTTATGCACGAACGTTGCAATA
CTATCAGAGTGTTTACGCGAAACGAAATCCTTTTGCAATTTTTGATTTGG
TCGTATATAGCTAACAATAGTGAGGTCCTCGTCGCGGACTTCAGTCCACC
TGCATCAACGTCTCGATGTAAATCGAATTCCTTGTCATAACCAATCATCG
TATCTCACGAAACAGACGAATTGTGAAATGGAAATCCTTTCATCACGAGA
TGTTGGTGTGGGTGAGCTGGTGTACGGAAGAGATTTGCGATGAGCAGGTC
ACTGTTGTTAGCTATATACGATTAAATAAAAAATTGCATCAGGATTTCGT
TTTGAGCAAACGCCTTATTTAGTACCAAGGACATTCGTTGTGTTGACGTC
TTTTGCTTTTCAGCTGATTGTATTGATCTCGTTTCGCTAGCTAATTGGGC
TGACATTTTATTGCCGCTATGCTTAACAGACGGTACCCTGATGGACGGTG
TGGCCTTGGCGCGTGTGTCTTTATCGTTGTCTGGTTTCCCTTGGTTTACT
GTTTCTGTTTGTGTTCAATGTGTTTGTTTACCTGTTTCGCTACGTTCCCC
CCTGGTTTTGTTTTTCCTGTTCTAGGTCTATGTTCGCTTGTATCACTCAT
TTTTCTATGACGTACCATTGCCGTTCCACGGAATCGCCATTTACCCTGCG
CCCACGGATCTGAGGAATCGGACTAACGTGTGAATAACAATAATAACAAT
ACTACTACTACTACTTCTTATGATGATGATGATGATGATGATGATGATGA
TGATGACGATAGTAATAATACTAATAATAGCAATAAAGATAATGTTGATT
GTTATAAATATACTTGTAGACTTGTATTGCAACGTTCCTAAACTACGTTT
TCGAGGCAAGAATCTGAAGGCCGCAAGAAAGAAGCTAATACCTCACTCCC
CCCACTCTATCGTTGAACGATCCAGGTGTTCACCCTGCTGAAGGTTCTGG
GACTGGGTGTGATATTTTTGAGGCACGCGGAACAGAGCAAGGTGGCGGCA
GCGGTGACACCAGCGGCAGGAGTCTTGCGGTATGTGCAGATAGCGAATTT
TGTCCTCTTCTGCCTGCTACTTCTTGTTTGGTTTTTCTAGTGTAGTTTCA
ATGGTTTTTTTACTAGGGCAGTGGACAGGAAGAGGTACTCCTTGATACCC
TTCGGTTTGTTCAGGGCAGCGCGGCGCACAGTCCGTCCCTGCTGCTGTTG
TTTACTCGAGTGCCTATTGCCAATGCGGATAGGTCATATGTACGCCCTGC
CAACGCACACAGACACGCGCTTCGCCATCGAGGGTACGCCACACGTACCT
TGTGTCAATGCACAGTACACTAGACTTGATTAGGTGGGATCGACGGGTTA
GCGTTAGCGTTAGTGTTAGAATTGACGAGTGAGGAGGGTGTTGCCCTGCG
GTGCTGTCGACAGGGGTTTTCGTTGTGCATGGTTTCTCACCTCGGATGGA
CGTCAATGACGGTCCAGGTCATGTTTTTTGTTTACGATTCTAGACCTATT
TACTTACATAAAATCTCCACGATTTTTTCACTTCCGGACAAAATGGATTC
TGTCTTTTTTCCTCCTATTTTTATAGCCCTCTAAGAGGAAGAGCTTAGAG
GAAAACTTCGCGCAACACTTACCCCGATAAATCGGATTCGCATGCCAGCT
ACCGGAAGGCCTGGCTAACCCGCTTCGCAGTGGACGTGTGGGATAAGCAC
CCCGAGTGTTCGCATGGGTGTGCAACTCGCACCTGCTAAGTAAAACCCCT
TGTTACGGAGGCGGGGTGCGGGAGTAAAAGTCAGCCGTTCCACATGATGT
TTTGTCCTAATCTCGTCGAACTTCAATTACGTACATGTATGTTTGATGCT
GAGGTCACGTATGCTGCTTTCACAGGTAGGCTGTAGGCTCAGTCAGTGCA
TGAGAATCCTTATCCGATCGGGCTTCGGTTCTTCAGCTGTCCATTTCTTT
CTTCTTTCTTGCTCCTTTCCTACCCTCGTCTTTCTTTCTTCAGCGGTAGA
TTTTAATGTATACTTGAAATAGATCTACATATGAAATTCATGAAGTTGAA
AGTGGTCACTTGAGACAGAAAAAAAAACTCTCGCATATTTATCCTTCTTG
CTCCTCTTATCTTTCTTCTTTTCTTCTTTTCTACCCTCGTTTCGTTCTCC
TTTCTTTTTTTTTCAGCGGCAGCGGTCGCCAGCCCTCTGTAACTCCGCCC
CAGCCGCTCCACCCACCTCAACAGCCGCGAGAACAATCTGGTCCTTGTCC
GCTCGCTCCAGGAAAAAACCACCGGCAAAGGACTTGAACAGTTTTAGCAG
CGGACAAGATACGGCGATCGCCACCGTCCATGGCGCTGCCACAGACATGC
CCGCTCCCATGCCATCTCCATTTTTTACATCATCGCCACGGCTACGCCGA
CATCCGTCATCGACCTCGTTCACATCTAGCAAGAGCGCGAGCAGCGAGAG
CAGTAATATTGGTGGGGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3397:10269..15288-

>mRNA_H-paniculata_contig3397.9070.1 ID=mRNA_H-paniculata_contig3397.9070.1|Name=mRNA_H-paniculata_contig3397.9070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig3397:10269..15288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACAACATTTTCGACGAAGCCATTGCCGAGGTGTTGAACGTGATGGA
GGTCAATTTCAAGGCGGATTTCGAGCGTAGCATGGAGTATCGGAGGCTTA
ATAGGGCTGTGGAGAGAGAAGCCAAGGAACTGTCTGTTCTGCGACAGAGG
TACAACATTTTCGACGAAGCCATTGCCGAGGTGTTGAACGTGATGGAGGT
CAATTTCAAGGCGGATTTCGAGCGTAGCATGGAGTATCGGAGGCTTAATA
GGGCTGTGGAGAGAGAAGCCAAGGAACTGTCTGTTCTGCGACAGGCAAAG
CTTGTGGCAGGGACTAAAAATGCCGAGAGAGAAGCAGCTCGTCGACCCAC
GCCTTATGGGAGCACCAGAAGCAGCTGGCCCACGCCCCGGGAACACGTTC
GAGGTGTTTCCGAGTTGTCGCTGGACAACAGCGACAGCGCTGGCAATGCG
GTGGGCTTGATGGAGGAGGGGTTCTCGGCGACTGGTGGCAAAGCTTGTGG
CAGGGACTAAAAATGCCGAGAGAGAAGCAGCTCGTCGACCCACGCCTTAT
GGGAGCACCAGAAGCAGCTGGCCCACGCCCCGGGAACACGTTCGAGGTGT
TTCCGAGTTGTCGCTGGACAACAGCGACAGCGCTGGCAATGCGGTGGGCT
TGATGGAGGAGGGGTTCTCGGCGACTGGTGGTGTTCACCCTGCTGAAGGT
TCTGGGACTGGGTGTGATATTTTTGAGGCACGCGGAACAGAGCAAGGTGG
CGGCAGCGGTGACACCAGCGGCAGGAGTCTTGCGGTGTTCACCCTGCTGA
AGGTTCTGGGACTGGGTGTGATATTTTTGAGGCACGCGGAACAGAGCAAG
GTGGCGGCAGCGGTGACACCAGCGGCAGGAGTCTTGCGCGGCAGCGGTCG
CCAGCCCTCTGTAACTCCGCCCCAGCCGCTCCACCCACCTCAACAGCCGC
GAGAACAATCTGGTCCTTGTCCGCTCGCTCCAGGAAAAAACCACCGGCAA
AGGACTTGAACAGTTTTAGCAGCGGACAAGATACGGCGATCGCCACCGTC
CATGGCGCTGCCACAGACATGCCCGCTCCCATGCCATCTCCATTTTTTAC
ATCATCGCCACGGCTACGCCGACATCCGTCATCGACCTCGTTCACATCTA
GCAAGAGCGCGAGCAGCGAGAGCAGTAATATTGGTGGGGAACGGCAGCGG
TCGCCAGCCCTCTGTAACTCCGCCCCAGCCGCTCCACCCACCTCAACAGC
CGCGAGAACAATCTGGTCCTTGTCCGCTCGCTCCAGGAAAAAACCACCGG
CAAAGGACTTGAACAGTTTTAGCAGCGGACAAGATACGGCGATCGCCACC
GTCCATGGCGCTGCCACAGACATGCCCGCTCCCATGCCATCTCCATTTTT
TACATCATCGCCACGGCTACGCCGACATCCGTCATCGACCTCGTTCACAT
CTAGCAAGAGCGCGAGCAGCGAGAGCAGTAATATTGGTGGGGAA
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