mRNA_H-paniculata_contig3397.9069.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3397.9069.1
Unique NamemRNA_H-paniculata_contig3397.9069.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3397.9069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3397contigH-paniculata_contig3397:6756..10173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2073
Cds size2070
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3397.9069.1prot_H-paniculata_contig3397.9069.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3397 6758..10173 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.4375489-CDS-H-paniculata_contig3397:6757..85901622930047.4375489-CDS-H-paniculata_contig3397:6757..8590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 6758..8590 -
1691481125.1676323-CDS-H-paniculata_contig3397:6757..85901691481125.1676323-CDS-H-paniculata_contig3397:6757..8590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 6758..8590 -
1622930047.45791-CDS-H-paniculata_contig3397:9149..92871622930047.45791-CDS-H-paniculata_contig3397:9149..9287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 9150..9287 -
1691481125.1801426-CDS-H-paniculata_contig3397:9149..92871691481125.1801426-CDS-H-paniculata_contig3397:9149..9287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 9150..9287 -
1622930047.4855628-CDS-H-paniculata_contig3397:10074..101731622930047.4855628-CDS-H-paniculata_contig3397:10074..10173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 10075..10173 -
1691481125.1908627-CDS-H-paniculata_contig3397:10074..101731691481125.1908627-CDS-H-paniculata_contig3397:10074..10173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3397 10075..10173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3397.9069.1

>prot_H-paniculata_contig3397.9069.1 ID=prot_H-paniculata_contig3397.9069.1|Name=mRNA_H-paniculata_contig3397.9069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=690bp
QGKSRQAVEESSGSDDQTMVTMPITTTTSPNLQGGGPPRPHDPVGDIERR
GWWRTILLPKRIPARISVVPVSSEEGVIKATPVGNRLDDPRFPCRGADIE
AGDSLQPPYTPEPPQPVVCRTSFPEAEGFESGSSAAVSNPDVVEETTPTR
FSRDSSSNRSISDVGTMAATVTDTTSIAGDAIARRAPLGGGGDMTHYPSP
LCTPVRRRTQSIAAPEVCYMNLEHRRHRSASRRRMVYLRGDTRTVDDGGS
NKDSCRYRNPRTAAGMLVGSENHHLHAYMTSRSVPTTPISSYAGAHAGSR
RPLPRLGLQQDGQDYTVAGCCGGQRHRGRVRSVSVDSVASTVAWPIGASS
DGLLGGGSPGPTRRERAWSDAADTTTVAMAAAVIVLDGGAVDEDLSPSRR
GRIVASGGGGGGGCARRNHRSRSLSNLDSMAVAVASISPCATPWAGRGGS
GSTERIDAFCIRAAGLGRGGGSDRPTNETTTSSTSGSSPGRRPTSGCGSR
SSTTMSGAAPPRPPSPLAKTRPLVHDRGRRSSSVGNLMRRCRSASPFASA
GSCARASAAAKFGRAAVAGYCRSSSSSSSGGWRRKQHSGDCKSRSRSMYE
YSSGGIIRVVDDNGLCTLRQPRSLASPLSQQEASGGGGDRNTSYMRIESS
RRGTAGGHSCVFTAHTVANDREGSTASSSGGGDKLGEGKE
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mRNA from alignment at H-paniculata_contig3397:6756..10173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3397.9069.1 ID=mRNA_H-paniculata_contig3397.9069.1|Name=mRNA_H-paniculata_contig3397.9069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3418bp|location=Sequence derived from alignment at H-paniculata_contig3397:6756..10173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGAAGAGTCGGCAGGCGGTAGAGGAATCGAGCGGGAGTGATGATCA
GACAATGGTAACGATGCCAATCACTACGACCACCTCGCCGAACCTTCAGG
CGAGTTTTTTCGTATTAGTTGTTTTGATGTACTAGTAGGTGTTGATGGTG
TTGTTGATTCAGGTTAAGGTGTATGTGTATTTGCGTTTCCAGGTCTTCAC
GTGGAACACGGGACGGGATGGGACGGGACAGGGAGAAGAGAGTCATACTT
ATGTTTTCCCATGTTTTGGGGTGATCGTTTTTTCTATCCAAATCTATTTC
TTTCATGCCCCATTCCACCTGATGCACAATCGCTCTTTGCTACCCTTTCT
TAAATTCGTTCTCCAATCCAACCTTCGTCAATCGTCGTCTTCTCAGACCG
TTTCATTCCCTAGAACCGCTATCGCCTTCTTCTTGCAGTTCATCCCAGGA
TTCAAGCGCCTTTCTATCGGACGCGACAGGAAAGTTACATACCTTCCATC
GGGACGGGACGAGACGGCCAGCGGTAATCAATACTTGGTTTTTTTATACA
TGTTTCCCGTGTGACCTCACAGGACGGGACGCGACGGGATCCTATAATAC
ACACGGGACGAGATGGGATGGGACTACGATTCCTTCCCGTGAGGATTCCG
TGTGAATTCCTGACTGTTTGATGTTGTTATACTCCCTCTGTCTCGCGAAA
AGGCGCGATTGAGTTTTAATGGGCATAAATTTCGTTTGGTCGGTGATTTT
TGGAGTTTCTGTTTGGACTCAGAATTTAAAGCAGAGAACAACAGCGTTTT
GGGGGTTTGAAGAAACCCGTTCTAAACAATAACCGTTCATTTTTCACTCG
CCTTGCTGACGATGGTTGCGTTTTGGTCTTGGGCAGGGTGGCGGTCCTCC
TCGGCCTCATGACCCAGTCGGGGATATCGAGAGGAGGGGATGGTGGCGGA
CTATTTTGCTGCCGAAAAGAATCCCCGCGCGAATCTCAGTGGTACCCGTG
TCAAGTGAAGAAGGAGTTATTAAGGTAATGAGTAATTCGAGATGGGGTGG
AAGAAGAAGGCATCTGCTAGTGTTATTGGTATTGAAATAAGTTCAATTTG
CTTTTTGGCAAAACGTTTGATTGATTTTGCTGCACGTGGCTATTGGAGCA
CGAATGCTTTGGTTGTGGTTGCGTAAAAAAAGCACGGCCATACAAGAAGT
GTGTGTTGTGCGTTTTGTTGTGGGAGGGCTGAGCGCGTAAAATGCTTCAG
ATCATGCAGTAGACATGGGATAGGTATCAGTTACATATCGTGTGGGCTCG
GTTTTGGCTGTTTCAGGTACGCGGACGTGCGATGACTTTGTTGGAACTGA
CTCAAATCTAGTCGATTTTGCGCATAAAGTTCCCCATTACTTCCTGTTCA
ACCAGCTAAATAGTGATGGCTGGCTGGAAAATAAGCAGCCTTCTGGCAGT
GCATAGCAGTGCTCCAAATTTGGAGTAATCCCGCAGTCAGGTAATCCTAC
ACAGCTTTTCACCTAATCCATTCAACTAATTCGCCGCTGCCTGCTTGCTC
CGGGGCCCTTCCCGCGATTTACGCACTTTACAGGCCACCCCTGTTGGCAA
CCGCCTAGACGATCCACGCTTTCCCTGCCGTGGCGCAGATATTGAGGCTG
GCGACTCATTGCAGCCGCCATATACGCCAGAGCCGCCGCAACCAGTAGTC
TGCCGTACATCGTTTCCCGAAGCGGAGGGGTTCGAGTCCGGGAGCTCGGC
TGCTGTGTCCAACCCAGACGTGGTGGAGGAGACCACGCCGACGCGATTCT
CGCGGGATTCGAGCTCCAATAGATCCATATCGGACGTCGGCACGATGGCG
GCCACGGTAACGGACACTACCTCCATCGCTGGCGATGCGATCGCGCGACG
GGCACCGCTCGGGGGTGGTGGTGATATGACGCACTACCCGTCGCCGCTGT
GCACTCCCGTTCGACGGCGGACGCAGTCCATCGCCGCACCGGAAGTGTGC
TACATGAATTTGGAACACCGAAGACATCGAAGCGCCAGCAGAAGAAGAAT
GGTGTACTTGCGCGGAGACACGAGAACGGTGGATGATGGCGGTAGCAACA
AGGACAGCTGCAGGTATCGCAACCCGCGGACAGCGGCAGGGATGCTAGTG
GGGTCCGAGAACCATCACCTTCACGCCTACATGACTTCGAGGAGTGTCCC
GACGACGCCGATATCGTCCTATGCGGGCGCGCACGCTGGTAGCCGTCGGC
CGTTGCCGCGGCTTGGGCTGCAGCAAGATGGTCAAGACTACACCGTTGCT
GGCTGTTGTGGCGGGCAGCGACACCGGGGGCGGGTGCGCTCTGTTTCGGT
GGATTCCGTCGCCTCTACCGTTGCGTGGCCCATCGGCGCCTCCTCCGATG
GGCTGTTAGGTGGCGGCAGCCCGGGTCCCACTCGGCGAGAGCGTGCGTGG
TCTGACGCGGCTGATACCACCACCGTAGCGATGGCTGCCGCCGTGATTGT
GTTGGACGGCGGCGCTGTCGACGAAGACTTGTCGCCGTCGCGCCGAGGGA
GGATCGTCGCAAGCGGCGGCGGTGGCGGCGGCGGATGTGCCAGACGTAAT
CACCGATCCAGGTCACTTTCGAACCTAGACAGCATGGCTGTTGCGGTCGC
GTCTATCTCCCCTTGCGCAACCCCGTGGGCCGGCAGAGGGGGATCCGGGT
CTACCGAACGAATCGATGCGTTCTGTATTAGGGCGGCGGGCCTCGGAAGA
GGTGGAGGCAGCGACCGACCAACCAACGAGACGACCACCAGTAGTACAAG
TGGCAGCAGCCCTGGCCGAAGACCCACGAGCGGTTGTGGTAGTCGGTCAT
CGACTACTATGTCCGGCGCTGCGCCGCCGCGACCGCCCTCCCCATTGGCG
AAAACGAGACCGCTGGTGCACGACCGCGGTCGACGCAGCTCTTCGGTAGG
GAACCTCATGCGCCGCTGTCGCTCCGCTTCCCCGTTCGCGAGTGCTGGTT
CCTGTGCAAGAGCGAGTGCCGCAGCGAAGTTTGGTAGGGCCGCTGTCGCC
GGCTACTGTCGATCATCGAGCTCGTCGTCGAGCGGTGGCTGGAGAAGGAA
ACAACATTCCGGAGACTGTAAGAGTAGGAGCCGTTCCATGTACGAATATT
CAAGCGGCGGCATCATCCGTGTTGTCGACGACAACGGTCTGTGTACCCTC
CGACAACCGCGAAGTTTGGCTTCTCCGCTATCTCAACAGGAGGCTAGTGG
TGGTGGTGGTGATCGTAACACTTCGTACATGCGCATAGAGAGTAGCCGCC
GTGGTACCGCCGGTGGGCACTCTTGCGTGTTCACTGCCCACACAGTGGCT
AATGATCGTGAAGGAAGTACTGCTAGCAGTAGCGGCGGCGGCGACAAGCT
TGGGGAGGGGAAGGAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig3397:6756..10173-

>mRNA_H-paniculata_contig3397.9069.1 ID=mRNA_H-paniculata_contig3397.9069.1|Name=mRNA_H-paniculata_contig3397.9069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4140bp|location=Sequence derived from alignment at H-paniculata_contig3397:6756..10173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGAAGAGTCGGCAGGCGGTAGAGGAATCGAGCGGGAGTGATGATCA
GACAATGGTAACGATGCCAATCACTACGACCACCTCGCCGAACCTTCAGC
AGGGGAAGAGTCGGCAGGCGGTAGAGGAATCGAGCGGGAGTGATGATCAG
ACAATGGTAACGATGCCAATCACTACGACCACCTCGCCGAACCTTCAGGG
TGGCGGTCCTCCTCGGCCTCATGACCCAGTCGGGGATATCGAGAGGAGGG
GATGGTGGCGGACTATTTTGCTGCCGAAAAGAATCCCCGCGCGAATCTCA
GTGGTACCCGTGTCAAGTGAAGAAGGAGTTATTAAGGGTGGCGGTCCTCC
TCGGCCTCATGACCCAGTCGGGGATATCGAGAGGAGGGGATGGTGGCGGA
CTATTTTGCTGCCGAAAAGAATCCCCGCGCGAATCTCAGTGGTACCCGTG
TCAAGTGAAGAAGGAGTTATTAAGGCCACCCCTGTTGGCAACCGCCTAGA
CGATCCACGCTTTCCCTGCCGTGGCGCAGATATTGAGGCTGGCGACTCAT
TGCAGCCGCCATATACGCCAGAGCCGCCGCAACCAGTAGTCTGCCGTACA
TCGTTTCCCGAAGCGGAGGGGTTCGAGTCCGGGAGCTCGGCTGCTGTGTC
CAACCCAGACGTGGTGGAGGAGACCACGCCGACGCGATTCTCGCGGGATT
CGAGCTCCAATAGATCCATATCGGACGTCGGCACGATGGCGGCCACGGTA
ACGGACACTACCTCCATCGCTGGCGATGCGATCGCGCGACGGGCACCGCT
CGGGGGTGGTGGTGATATGACGCACTACCCGTCGCCGCTGTGCACTCCCG
TTCGACGGCGGACGCAGTCCATCGCCGCACCGGAAGTGTGCTACATGAAT
TTGGAACACCGAAGACATCGAAGCGCCAGCAGAAGAAGAATGGTGTACTT
GCGCGGAGACACGAGAACGGTGGATGATGGCGGTAGCAACAAGGACAGCT
GCAGGTATCGCAACCCGCGGACAGCGGCAGGGATGCTAGTGGGGTCCGAG
AACCATCACCTTCACGCCTACATGACTTCGAGGAGTGTCCCGACGACGCC
GATATCGTCCTATGCGGGCGCGCACGCTGGTAGCCGTCGGCCGTTGCCGC
GGCTTGGGCTGCAGCAAGATGGTCAAGACTACACCGTTGCTGGCTGTTGT
GGCGGGCAGCGACACCGGGGGCGGGTGCGCTCTGTTTCGGTGGATTCCGT
CGCCTCTACCGTTGCGTGGCCCATCGGCGCCTCCTCCGATGGGCTGTTAG
GTGGCGGCAGCCCGGGTCCCACTCGGCGAGAGCGTGCGTGGTCTGACGCG
GCTGATACCACCACCGTAGCGATGGCTGCCGCCGTGATTGTGTTGGACGG
CGGCGCTGTCGACGAAGACTTGTCGCCGTCGCGCCGAGGGAGGATCGTCG
CAAGCGGCGGCGGTGGCGGCGGCGGATGTGCCAGACGTAATCACCGATCC
AGGTCACTTTCGAACCTAGACAGCATGGCTGTTGCGGTCGCGTCTATCTC
CCCTTGCGCAACCCCGTGGGCCGGCAGAGGGGGATCCGGGTCTACCGAAC
GAATCGATGCGTTCTGTATTAGGGCGGCGGGCCTCGGAAGAGGTGGAGGC
AGCGACCGACCAACCAACGAGACGACCACCAGTAGTACAAGTGGCAGCAG
CCCTGGCCGAAGACCCACGAGCGGTTGTGGTAGTCGGTCATCGACTACTA
TGTCCGGCGCTGCGCCGCCGCGACCGCCCTCCCCATTGGCGAAAACGAGA
CCGCTGGTGCACGACCGCGGTCGACGCAGCTCTTCGGTAGGGAACCTCAT
GCGCCGCTGTCGCTCCGCTTCCCCGTTCGCGAGTGCTGGTTCCTGTGCAA
GAGCGAGTGCCGCAGCGAAGTTTGGTAGGGCCGCTGTCGCCGGCTACTGT
CGATCATCGAGCTCGTCGTCGAGCGGTGGCTGGAGAAGGAAACAACATTC
CGGAGACTGTAAGAGTAGGAGCCGTTCCATGTACGAATATTCAAGCGGCG
GCATCATCCGTGTTGTCGACGACAACGGTCTGTGTACCCTCCGACAACCG
CGAAGTTTGGCTTCTCCGCTATCTCAACAGGAGGCTAGTGGTGGTGGTGG
TGATCGTAACACTTCGTACATGCGCATAGAGAGTAGCCGCCGTGGTACCG
CCGGTGGGCACTCTTGCGTGTTCACTGCCCACACAGTGGCTAATGATCGT
GAAGGAAGTACTGCTAGCAGTAGCGGCGGCGGCGACAAGCTTGGGGAGGG
GAAGGAAGCCACCCCTGTTGGCAACCGCCTAGACGATCCACGCTTTCCCT
GCCGTGGCGCAGATATTGAGGCTGGCGACTCATTGCAGCCGCCATATACG
CCAGAGCCGCCGCAACCAGTAGTCTGCCGTACATCGTTTCCCGAAGCGGA
GGGGTTCGAGTCCGGGAGCTCGGCTGCTGTGTCCAACCCAGACGTGGTGG
AGGAGACCACGCCGACGCGATTCTCGCGGGATTCGAGCTCCAATAGATCC
ATATCGGACGTCGGCACGATGGCGGCCACGGTAACGGACACTACCTCCAT
CGCTGGCGATGCGATCGCGCGACGGGCACCGCTCGGGGGTGGTGGTGATA
TGACGCACTACCCGTCGCCGCTGTGCACTCCCGTTCGACGGCGGACGCAG
TCCATCGCCGCACCGGAAGTGTGCTACATGAATTTGGAACACCGAAGACA
TCGAAGCGCCAGCAGAAGAAGAATGGTGTACTTGCGCGGAGACACGAGAA
CGGTGGATGATGGCGGTAGCAACAAGGACAGCTGCAGGTATCGCAACCCG
CGGACAGCGGCAGGGATGCTAGTGGGGTCCGAGAACCATCACCTTCACGC
CTACATGACTTCGAGGAGTGTCCCGACGACGCCGATATCGTCCTATGCGG
GCGCGCACGCTGGTAGCCGTCGGCCGTTGCCGCGGCTTGGGCTGCAGCAA
GATGGTCAAGACTACACCGTTGCTGGCTGTTGTGGCGGGCAGCGACACCG
GGGGCGGGTGCGCTCTGTTTCGGTGGATTCCGTCGCCTCTACCGTTGCGT
GGCCCATCGGCGCCTCCTCCGATGGGCTGTTAGGTGGCGGCAGCCCGGGT
CCCACTCGGCGAGAGCGTGCGTGGTCTGACGCGGCTGATACCACCACCGT
AGCGATGGCTGCCGCCGTGATTGTGTTGGACGGCGGCGCTGTCGACGAAG
ACTTGTCGCCGTCGCGCCGAGGGAGGATCGTCGCAAGCGGCGGCGGTGGC
GGCGGCGGATGTGCCAGACGTAATCACCGATCCAGGTCACTTTCGAACCT
AGACAGCATGGCTGTTGCGGTCGCGTCTATCTCCCCTTGCGCAACCCCGT
GGGCCGGCAGAGGGGGATCCGGGTCTACCGAACGAATCGATGCGTTCTGT
ATTAGGGCGGCGGGCCTCGGAAGAGGTGGAGGCAGCGACCGACCAACCAA
CGAGACGACCACCAGTAGTACAAGTGGCAGCAGCCCTGGCCGAAGACCCA
CGAGCGGTTGTGGTAGTCGGTCATCGACTACTATGTCCGGCGCTGCGCCG
CCGCGACCGCCCTCCCCATTGGCGAAAACGAGACCGCTGGTGCACGACCG
CGGTCGACGCAGCTCTTCGGTAGGGAACCTCATGCGCCGCTGTCGCTCCG
CTTCCCCGTTCGCGAGTGCTGGTTCCTGTGCAAGAGCGAGTGCCGCAGCG
AAGTTTGGTAGGGCCGCTGTCGCCGGCTACTGTCGATCATCGAGCTCGTC
GTCGAGCGGTGGCTGGAGAAGGAAACAACATTCCGGAGACTGTAAGAGTA
GGAGCCGTTCCATGTACGAATATTCAAGCGGCGGCATCATCCGTGTTGTC
GACGACAACGGTCTGTGTACCCTCCGACAACCGCGAAGTTTGGCTTCTCC
GCTATCTCAACAGGAGGCTAGTGGTGGTGGTGGTGATCGTAACACTTCGT
ACATGCGCATAGAGAGTAGCCGCCGTGGTACCGCCGGTGGGCACTCTTGC
GTGTTCACTGCCCACACAGTGGCTAATGATCGTGAAGGAAGTACTGCTAG
CAGTAGCGGCGGCGGCGACAAGCTTGGGGAGGGGAAGGAA
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