mRNA_H-paniculata_contig33965.9068.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33965.9068.1
Unique NamemRNA_H-paniculata_contig33965.9068.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33965.9068.1 vs. uniprot
Match: D7FYI3_ECTSI (Hsp90 chaperone protein kinase-targeting subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYI3_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 8.400e-31
Identity = 83/147 (56.46%), Postives = 95/147 (64.63%), Query Frame = 3 
Query:    3 RRQREEKEQAANARKAELEKGIKEGQTRVQELQERLTMLSGEGETVEGEDTTALTAEMKEVKISVEKMQQEVDSIERNKTWNWENICHVTEERTIINKSAASEVP--VAYDPLLPSHGRFAGGKNNLVT----NGTDQIVHRSYRSF 425
            RRQREEKEQ  NARKAELEKGIK G  RV EL++R   +  EG  V+GED  ALT E +E++ +VE  ++EV+SIERNKTWNWEN+CHVTEERTIINKSA SE         L P      G K   VT      T Q VH SY  F
Sbjct:   36 RRQREEKEQEQNARKAELEKGIKAGLARVAELEQRSAAVKAEGGDVDGEDPVALTVEAEELQKAVEAKRKEVESIERNKTWNWENMCHVTEERTIINKSADSEAKDTTMRSALPPKLAAALGEKPRAVTAPGPETTTQEVH-SYSDF 181
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BLAST of mRNA_H-paniculata_contig33965.9068.1 vs. uniprot
Match: A0A836C784_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C784_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.860e-7
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 3 
Query:   54 LEKGIKEGQTRVQELQERL-TMLSGEGETVEGEDTTALTAEMKEVKISVEKMQQEVDSIERNKTWNWENICHVTEERTIINKSAASEVP--VAYDPLLPS-HGRFAGGK 368
            LEK       R  +L+E L  + SGE +  E ED  A++ E+K ++ ++EK  + +  IE+NK WNWEN+CHV EERTI++   A +      +  L P      AGGK
Sbjct:   52 LEKSNSTDLKRAMKLKELLHAVKSGEAQD-ETEDPIAISNELKALEEAMEKRHKRLQEIEKNKKWNWENMCHVVEERTIVSAEKAGDGKDNTVHSELPPKLAAAIAGGK 159
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BLAST of mRNA_H-paniculata_contig33965.9068.1 vs. uniprot
Match: A0A7S2XXR3_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXR3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.300e-5
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 3 
Query:   84 RVQELQERLTMLSGEGETVEGE---DTTALTAEMKEVKISVEKMQQEVDSIERNKTWNWENICHVTEERTIINKSAASEVPVAYDPL 335
            RV  +  +LT +   G   E E   D  AL AE+K+++  +++  + ++ +ERNK WN +N+CHV EERTIIN +  S+     D +
Sbjct:   71 RVASIVAKLTAIPAAGAGAEEEEPVDREALEAELKDLQGVIDRRNERLEEMERNKKWNVDNMCHVVEERTIINPALGSQEGTIKDTM 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33965.9068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYI3_ECTSI8.400e-3156.46Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A836C784_9STRA3.860e-738.53Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7S2XXR3_9STRA1.300e-536.78Hsp90 chaperone protein kinase-targeting subunit n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33965contigH-paniculata_contig33965:197..2133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue1e-15
Seed eggNOG ortholog2880.D7FYI3
Preferred nameCDC37
KEGG koko:K09554
KEGG Pathwayko04151,map04151
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000161,GO:0000165,GO:0000226,GO:0000793,GO:0001726,GO:0001932,GO:0001934,GO:0001959,GO:0002576,GO:0002682,GO:0003674,GO:0003824,GO:0004672,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0006457,GO:0006464,GO:0006468,GO:0006605,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008022,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0010468,GO:0010506,GO:0010508,GO:0010562,GO:0010604,GO:0010608,GO:0010638,GO:0010646,GO:0010821,GO:0010822,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016239,GO:0016241,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0030141,GO:0030234,GO:0030295,GO:0030296,GO:0030474,GO:0031023,GO:0031072,GO:0031089,GO:0031098,GO:0031252,GO:0031253,GO:0031256,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031399,GO:0031401,GO:0031410,GO:0031435,GO:0031647,GO:0031974,GO:0031982,GO:0031983,GO:0032147,GO:0032268,GO:0032270,GO:0032587,GO:0032872,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0033674,GO:0034613,GO:0034774,GO:0035556,GO:0035690,GO:0036211,GO:0038127,GO:0038128,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042827,GO:0042886,GO:0042995,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043412,GO:0043422,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045088,GO:0045184,GO:0045859,GO:0045860,GO:0045937,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0050730,GO:0050731,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051300,GO:0051338,GO:0051347,GO:0051403,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051879,GO:0060205,GO:0060255,GO:0060330,GO:0060334,GO:0060338,GO:0060759,GO:0061077,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070302,GO:0070727,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071944,GO:0072686,GO:0080090,GO:0080134,GO:0080135,GO:0097110,GO:0097708,GO:0098590,GO:0098772,GO:0098779,GO:0098780,GO:0099503,GO:0101031,GO:0120025,GO:0120038,GO:0140096,GO:1901524,GO:1901526,GO:1901564,GO:1902531,GO:1903146,GO:1903599,GO:1904029,GO:1904923,GO:1904925,GO:1990565
EggNOG free text desc.chaperone binding
EggNOG OGsKOG2260@1,KOG2260@2759
Ec32 ortholog descriptionCdc37, N-terminal domain
Ec32 orthologEc-23_003080.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03029,ko03110
Exons3
Model size849
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33965.9068.1prot_H-paniculata_contig33965.9068.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33965 1107..1889 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.3302739-UTR-H-paniculata_contig33965:196..2431622930047.3302739-UTR-H-paniculata_contig33965:196..243Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33965 197..243 +
1691481125.1123044-UTR-H-paniculata_contig33965:196..2431691481125.1123044-UTR-H-paniculata_contig33965:196..243Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33965 197..243 +
1622930047.357908-UTR-H-paniculata_contig33965:1040..11061622930047.357908-UTR-H-paniculata_contig33965:1040..1106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33965 1041..1106 +
1691481125.1272438-UTR-H-paniculata_contig33965:1040..11061691481125.1272438-UTR-H-paniculata_contig33965:1040..1106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33965 1041..1106 +
1622930047.3961754-UTR-H-paniculata_contig33965:1889..21331622930047.3961754-UTR-H-paniculata_contig33965:1889..2133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33965 1890..2133 +
1691481125.1574962-UTR-H-paniculata_contig33965:1889..21331691481125.1574962-UTR-H-paniculata_contig33965:1889..2133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33965 1890..2133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.3708243-CDS-H-paniculata_contig33965:1106..11481622930047.3708243-CDS-H-paniculata_contig33965:1106..1148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33965 1107..1148 +
1691481125.1362724-CDS-H-paniculata_contig33965:1106..11481691481125.1362724-CDS-H-paniculata_contig33965:1106..1148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33965 1107..1148 +
1622930047.3819308-CDS-H-paniculata_contig33965:1439..18891622930047.3819308-CDS-H-paniculata_contig33965:1439..1889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33965 1440..1889 +
1691481125.1461635-CDS-H-paniculata_contig33965:1439..18891691481125.1461635-CDS-H-paniculata_contig33965:1439..1889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33965 1440..1889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33965.9068.1

>prot_H-paniculata_contig33965.9068.1 ID=prot_H-paniculata_contig33965.9068.1|Name=mRNA_H-paniculata_contig33965.9068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MLSGEGETVEGEDTTALTAEMKEVKISVEKMQQEVDSIERNKTWNWENIC
HVTEERTIINKSAASEVPVAYDPLLPSHGRFAGGKNNLVTNGTDQIVHRS
YRSFSPIDSMSGIERCDSLPIISTRFPSVIGALPIVSTWFPGLTRTSLET
PMLIGPNWLKVIL*
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mRNA from alignment at H-paniculata_contig33965:197..2133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33965.9068.1 ID=mRNA_H-paniculata_contig33965.9068.1|Name=mRNA_H-paniculata_contig33965.9068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1937bp|location=Sequence derived from alignment at H-paniculata_contig33965:197..2133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGCGTCAAAGAGAGGAGAAGGAGCAAGCGGCGAACGCGCGCAAGGTG
TGCAGGGGACGATCGTTGATGAAGCATCAGTCTCTGTTTCTCTCTGTTTC
GGTGACTTGTGATTGTTTTTTGTGGCTATTTTCAAAAAGTTTGTTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTCTTTTTATCGTTTGCTTTTGCTGTTCC
ACGTCCAGCCTCTTTTGTGTTTCGGGTGAGGCAATTAATCTGTTGCTCAT
TTAGCGTTCTACTATCTGTTACGGAGTAACATACACAATAATCAGGGGCA
AATTAGAAAATTGACATTTTGAGGTGTAATTCATGCAATACGATATGCAC
CAATCGGTTGCTGTATGCCCGTGCAAGTGTTTTTAGAGTGTGTGTTTTGT
TTTCAGCTAGAAGCGAAAATCTGTAGACCAACGGGGAAAAAAAACAAAAT
TCAGTTTCCGAAAAACCAAAAAAAATGCTCCTGATTATTATGTTCCACCG
TAATAGGGCGATGTACCTGAATCGAGTATATTTCGTTATTCTCTACACCA
TCTGAGAAACGTGTTCAATTTGAGTAACAGTCTCTCGGTGGACCTCCTGG
CACTACAAAAATAGTGCCTTGAATCCGGGCCATGGACTGCAGCCTTCTTT
TCTCACCCCCCTCCCCCCCCTCTCCATCCATATGCACGTCTACGCATCGT
ACACTCCGTTTACATCCGGCGTAATAATAGTACGACAGTATACACTTGTA
GTGGTTTGCGAGCGAAGCGCTTCTTGGTCTGATGTTTCACGGAATTTTTG
TGTAATCTATGTGTATCTTGTATTGTATGGTATGTATGATACAGGCGGAG
CTGGAAAAGGGGATAAAGGAAGGACAGACGAGGGTTCAGGAACTCCAAGA
ACGACTCACGATGCTCTCAGGGGAGGGAGAAACTGTTGAAGGGGAAGATA
CGGTGAGATCTTTTCGTTTCATTTCATTTCATTTCGTTTCGTTTCGTTTC
ATTTCGTTTCGTTTATTTCTAAACGTGCGCGCGAAGATTACACTCACATG
TTGTACTTGAGGGTATAATAGCGCTTATCATGCACAGCTCGTTCAGCGTC
AAGTACACCAAGCTCTCACAAATGGGAGTAGATTGATAGTCCCCAGGCTT
GGTAGGTTTGCCCGCCGCCCCCACACACTCGAAGCCTCCGGCCTCCTTCC
CTCGTCCCCACCGCATGCTTGTCTTGTCGATTATTCTTGTCAGACGGCAC
TGACGGCCGAGATGAAGGAGGTGAAGATTTCCGTCGAGAAGATGCAGCAA
GAGGTGGATTCGATCGAGCGCAATAAGACCTGGAACTGGGAGAATATTTG
TCACGTCACCGAGGAACGGACCATCATCAACAAGAGCGCCGCGAGCGAGG
TACCAGTAGCGTATGACCCTTTATTGCCGTCCCATGGTAGGTTTGCTGGT
GGAAAGAATAACTTGGTCACGAATGGGACCGATCAGATCGTCCACAGATC
GTACCGCTCATTTTCACCGATAGATAGTATGAGCGGTATTGAGCGGTGTG
ATTCCCTACCGATCATCAGCACACGGTTTCCATCTGTGATCGGTGCTCTA
CCCATTGTTAGCACATGGTTTCCAGGTCTGACCCGTACAAGCCTTGAGAC
ACCGATGTTGATCGGTCCCAACTGGCTGAAAGTTATCTTATGATACACAG
CAGGACTGGTACCTTGCACAGTTCATCGAACAGATGAGATCCTGCACAGT
TCTCGTGGATCTTTTCACACCGATATCTCGTACTGTCGGTATCAGCGTTA
TGATCTGTGCATGGTCTCCACCTGGTGACCAGTAGTACCCTATTGATCAT
TAGCACACGTTCGTCTACGGCTGATCGTCACAAGCCACCTCGTACCGATT
CTGGCGGGGACAACATGCCACGCCATGCCCTACTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33965:197..2133+

>mRNA_H-paniculata_contig33965.9068.1 ID=mRNA_H-paniculata_contig33965.9068.1|Name=mRNA_H-paniculata_contig33965.9068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig33965:197..2133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTCAGGGGAGGGAGAAACTGTTGAAGGGGAAGATACGATGCTCTC
AGGGGAGGGAGAAACTGTTGAAGGGGAAGATACGACGGCACTGACGGCCG
AGATGAAGGAGGTGAAGATTTCCGTCGAGAAGATGCAGCAAGAGGTGGAT
TCGATCGAGCGCAATAAGACCTGGAACTGGGAGAATATTTGTCACGTCAC
CGAGGAACGGACCATCATCAACAAGAGCGCCGCGAGCGAGGTACCAGTAG
CGTATGACCCTTTATTGCCGTCCCATGGTAGGTTTGCTGGTGGAAAGAAT
AACTTGGTCACGAATGGGACCGATCAGATCGTCCACAGATCGTACCGCTC
ATTTTCACCGATAGATAGTATGAGCGGTATTGAGCGGTGTGATTCCCTAC
CGATCATCAGCACACGGTTTCCATCTGTGATCGGTGCTCTACCCATTGTT
AGCACATGGTTTCCAGGTCTGACCCGTACAAGCCTTGAGACACCGATGTT
GATCGGTCCCAACTGGCTGAAAGTTATCTTATGAACGGCACTGACGGCCG
AGATGAAGGAGGTGAAGATTTCCGTCGAGAAGATGCAGCAAGAGGTGGAT
TCGATCGAGCGCAATAAGACCTGGAACTGGGAGAATATTTGTCACGTCAC
CGAGGAACGGACCATCATCAACAAGAGCGCCGCGAGCGAGGTACCAGTAG
CGTATGACCCTTTATTGCCGTCCCATGGTAGGTTTGCTGGTGGAAAGAAT
AACTTGGTCACGAATGGGACCGATCAGATCGTCCACAGATCGTACCGCTC
ATTTTCACCGATAGATAGTATGAGCGGTATTGAGCGGTGTGATTCCCTAC
CGATCATCAGCACACGGTTTCCATCTGTGATCGGTGCTCTACCCATTGTT
AGCACATGGTTTCCAGGTCTGACCCGTACAAGCCTTGAGACACCGATGTT
GATCGGTCCCAACTGGCTGAAAGTTATCTTATGA
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