mRNA_H-paniculata_contig33957.9066.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33957.9066.1
Unique NamemRNA_H-paniculata_contig33957.9066.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33957.9066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33957contigH-paniculata_contig33957:374..977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size227
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930046.8085675-CDS-H-paniculata_contig33957:373..5051622930046.8085675-CDS-H-paniculata_contig33957:373..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33957 374..505 +
1691481124.8335345-CDS-H-paniculata_contig33957:373..5051691481124.8335345-CDS-H-paniculata_contig33957:373..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33957 374..505 +
1622930046.8380823-CDS-H-paniculata_contig33957:883..9761622930046.8380823-CDS-H-paniculata_contig33957:883..976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33957 884..976 +
1691481124.8444932-CDS-H-paniculata_contig33957:883..9761691481124.8444932-CDS-H-paniculata_contig33957:883..976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33957 884..976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33957.9066.1prot_H-paniculata_contig33957.9066.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33957 374..976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33957.9066.1

>prot_H-paniculata_contig33957.9066.1 ID=prot_H-paniculata_contig33957.9066.1|Name=mRNA_H-paniculata_contig33957.9066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
NDRDLKDHPDGLLYTRITQVALLRDNFRCVAARGTSCVLVPNRRWFQEGL
ANASEWCIQRVHTLGWKGKKGLLNA
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mRNA from alignment at H-paniculata_contig33957:374..977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33957.9066.1 ID=mRNA_H-paniculata_contig33957.9066.1|Name=mRNA_H-paniculata_contig33957.9066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=604bp|location=Sequence derived from alignment at H-paniculata_contig33957:374..977+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGATAGAGACCTCAAAGACCACCCGGATGGACTGCTGTACACCCGCAT
CACTCAGGTTGCCCTACTACGCGACAATTTTCGATGCGTTGCAGCCCGAG
GCACAAGCTGCGTACTTGTACCGAATCGCCGGGTGAGTCTCAAGTAACCC
TTGAGTGCTTTTACCGACATGTCTAGCTCGTACAACGAAGGGTAGAAAAT
AACGTTCCCAACCCTAACCCTATAGATCGGCTGTACTAGTAGGATTGCGT
TAATGATCCACGTTCGACCACCGATTCATACCTTGCAGTAGCACATGCGA
TGCTGTGCGATGATGGTGAAGGGCTGTCTATGATTCGAAGCGTTCACCTT
GGGCGGTCCGTCATATGTTGGTTGGGAAATTGTTCTGTTCTTGTGCGTAG
TTTATCTACTGCCTCATTCGAATCCCGACGAACGGCACAGCTGAAGCGGG
AAAAACCCTTACGAAAGCATCTTTCTGTTTTCCTCCGCCGCATATTTTTG
TGTTGCTTAGTGGTTTCAAGAAGGGCTTGCTAACGCTTCCGAGTGGTGCA
TACAGAGGGTGCACACTCTGGGGTGGAAAGGAAAGAAGGGCTTGCTAAAC
GCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig33957:374..977+

>mRNA_H-paniculata_contig33957.9066.1 ID=mRNA_H-paniculata_contig33957.9066.1|Name=mRNA_H-paniculata_contig33957.9066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig33957:374..977+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGATAGAGACCTCAAAGACCACCCGGATGGACTGCTGTACACCCGCAT
CACTCAGGTTGCCCTACTACGCGACAATTTTCGATGCGTTGCAGCCCGAG
GCACAAGCTGCGTACTTGTACCGAATCGCCGGAATGATAGAGACCTCAAA
GACCACCCGGATGGACTGCTGTACACCCGCATCACTCAGGTTGCCCTACT
ACGCGACAATTTTCGATGCGTTGCAGCCCGAGGCACAAGCTGCGTACTTG
TACCGAATCGCCGGTGGTTTCAAGAAGGGCTTGCTAACGCTTCCGAGTGG
TGCATACAGAGGGTGCACACTCTGGGGTGGAAAGGAAAGAAGGGCTTGCT
AAACGCCTGGTTTCAAGAAGGGCTTGCTAACGCTTCCGAGTGGTGCATAC
AGAGGGTGCACACTCTGGGGTGGAAAGGAAAGAAGGGCTTGCTAAACGCC
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