mRNA_H-paniculata_contig33931.9062.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33931.9062.1
Unique NamemRNA_H-paniculata_contig33931.9062.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33931.9062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33931contigH-paniculata_contig33931:1924..2387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size466
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930046.3987858-CDS-H-paniculata_contig33931:1923..23851622930046.3987858-CDS-H-paniculata_contig33931:1923..2385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33931 1924..2385 +
1691481124.6883996-CDS-H-paniculata_contig33931:1923..23851691481124.6883996-CDS-H-paniculata_contig33931:1923..2385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33931 1924..2385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33931.9062.1prot_H-paniculata_contig33931.9062.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33931 1924..2385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33931.9062.1

>prot_H-paniculata_contig33931.9062.1 ID=prot_H-paniculata_contig33931.9062.1|Name=mRNA_H-paniculata_contig33931.9062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
CKNETKFHWLLCRGPGFRNPRNILSTYAHIFSLKGDNELEMWARMRPHRH
RDFEPASLERNESYSTTRCTYGYENSVYTIIHSRVCSEYKWRTQTESLSR
VLVWSLSDYLIGFSLPRYASSVKYVPPNIMCTLKPPTYPNNNVYPKCRGV
ISPF
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mRNA from alignment at H-paniculata_contig33931:1924..2387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33931.9062.1 ID=mRNA_H-paniculata_contig33931.9062.1|Name=mRNA_H-paniculata_contig33931.9062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=464bp|location=Sequence derived from alignment at H-paniculata_contig33931:1924..2387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAAAAATGAGACAAAATTCCATTGGTTGTTGTGTAGGGGACCGGGGTT
CAGGAACCCCAGGAATATTCTCTCCACATATGCACATATATTTAGTCTGA
AAGGAGACAATGAACTGGAAATGTGGGCGAGGATGCGACCACACAGGCAC
AGAGATTTTGAGCCTGCCTCACTTGAGAGAAATGAAAGTTACTCCACAAC
GAGATGCACGTACGGATATGAGAACTCCGTATATACGATTATTCACTCCA
GGGTCTGCAGTGAATATAAATGGAGGACGCAAACAGAAAGTTTGAGTCGT
GTCCTTGTGTGGTCACTTAGTGATTATTTAATCGGTTTCTCGCTACCACG
ATACGCTTCGAGCGTAAAATACGTACCGCCCAATATTATGTGCACCCTCA
AACCTCCCACCTACCCGAATAATAACGTATACCCAAAATGCCGAGGAGTT
ATCTCTCCCTTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig33931:1924..2387+

>mRNA_H-paniculata_contig33931.9062.1 ID=mRNA_H-paniculata_contig33931.9062.1|Name=mRNA_H-paniculata_contig33931.9062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig33931:1924..2387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAAAAATGAGACAAAATTCCATTGGTTGTTGTGTAGGGGACCGGGGTT
CAGGAACCCCAGGAATATTCTCTCCACATATGCACATATATTTAGTCTGA
AAGGAGACAATGAACTGGAAATGTGGGCGAGGATGCGACCACACAGGCAC
AGAGATTTTGAGCCTGCCTCACTTGAGAGAAATGAAAGTTACTCCACAAC
GAGATGCACGTACGGATATGAGAACTCCGTATATACGATTATTCACTCCA
GGGTCTGCAGTGAATATAAATGGAGGACGCAAACAGAAAGTTTGAGTCGT
GTCCTTGTGTGGTCACTTAGTGATTATTTAATCGGTTTCTCGCTACCACG
ATACGCTTCGAGCGTAAAATACGTACCGCCCAATATTATGTGCACCCTCA
AACCTCCCACCTACCCGAATAATAACGTATACCCAAAATGCCGAGGAGTT
ATCTCTCCCTTCTGCAAAAATGAGACAAAATTCCATTGGTTGTTGTGTAG
GGGACCGGGGTTCAGGAACCCCAGGAATATTCTCTCCACATATGCACATA
TATTTAGTCTGAAAGGAGACAATGAACTGGAAATGTGGGCGAGGATGCGA
CCACACAGGCACAGAGATTTTGAGCCTGCCTCACTTGAGAGAAATGAAAG
TTACTCCACAACGAGATGCACGTACGGATATGAGAACTCCGTATATACGA
TTATTCACTCCAGGGTCTGCAGTGAATATAAATGGAGGACGCAAACAGAA
AGTTTGAGTCGTGTCCTTGTGTGGTCACTTAGTGATTATTTAATCGGTTT
CTCGCTACCACGATACGCTTCGAGCGTAAAATACGTACCGCCCAATATTA
TGTGCACCCTCAAACCTCCCACCTACCCGAATAATAACGTATACCCAAAA
TGCCGAGGAGTTATCTCTCCCTTC
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