mRNA_H-paniculata_contig3392.9060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3392.9060.1 vs. uniprot
Match: D8LDC0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC0_ECTSI) HSP 1 Score: 209 bits (532), Expect = 4.320e-61 Identity = 157/336 (46.73%), Postives = 196/336 (58.33%), Query Frame = 1
Query: 7 QEIYKDPDFRNLGQSAVRTSMASIEAVAFLLAQLTLEGQRSAESDIRLKEELAKQRHENGRLTMQMRNQSASAEQKLREADHKLRLREKELADLQQEAYKEKGRKCLAWEKAYGHLRSQMDRGGARGGGYTPPESPRAGAVRGPAGYSMHDGGHGATAGGQG------LPQQQMSSEAGGGMGGRRDARSDSPRTHLRGGTFLGRSDHTCSSGGXXXXXXXXXXXXXXXXXXPMPRPPTARG-----AGLDHASPLLRPH--QSGFSHSVTPSPTFPGQEKPT--RFVSKRPETLLAARGYFQRDTSPSNRIGGSTRAMGGVGRSSGRSGFFPSTK 969
+E K+P+ + Q+A+RT+ + E + FL +Q+ LE QR AE+ LK E+AK +HE GR+TMQMRNQ+A+A+QK RE +HKLR+R KEL DLQ EAYKEK RKC AWEKAY +LRSQ +RGGG+TPPESPRAGA+RGP+G +GG G + QG G G+ G PR R GT S H+ + G P+PRP T+RG A D SP+LRP Q SHSVTPSPTF Q+ + RF KRPET + RGY+ R+ SP NR G A GGVG S S FFPS+K
Sbjct: 89 EEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLENQRGAEATSVLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQ-EAYKEKNRKCQAWEKAYANLRSQTT-DPSRGGGFTPPESPRAGAMRGPSG--SFNGGQGGSMQHQGPXXXXXXXXXXXXXXXGLGVAGM-------PRPGDRIGT---NSPHSSNRG---VAGYAAGGGRSSRPSWPIPRPNTSRGGSGNGATGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFAPKRPETPMEVRGYYSRNASPGNRSSG---AGGGVGARS--SSFFPSSK 402
BLAST of mRNA_H-paniculata_contig3392.9060.1 vs. uniprot
Match: A0A6H5JFE1_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE1_9PHAE) HSP 1 Score: 127 bits (319), Expect = 6.960e-30 Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 7 QEIYKDPDFRNLGQSAVRTSMASIEAVAFLLAQLTLEGQRSAESDIRLKEELAKQRHENGRLTMQMRNQSASAEQKLREADHKLRLREKELADLQQEAYKEKGRKCLAWEKAYGHLRSQ 363
QE K+P++ + Q+A+RT+ + E + FL +Q+ LE QR AE+ LK E+AK +HE GR+TMQMRNQ+A+A+QK RE +HKLR+R KEL DLQ EAYKEK RKC AWEKAY +LRSQ
Sbjct: 152 QEALKEPNYHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKQREMEHKLRVRTKELVDLQ-EAYKEKNRKCQAWEKAYANLRSQ 269 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3392.9060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3392.9060.1 >prot_H-paniculata_contig3392.9060.1 ID=prot_H-paniculata_contig3392.9060.1|Name=mRNA_H-paniculata_contig3392.9060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp CQQEIYKDPDFRNLGQSAVRTSMASIEAVAFLLAQLTLEGQRSAESDIRLback to top mRNA from alignment at H-paniculata_contig3392:3120..8591+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3392.9060.1 ID=mRNA_H-paniculata_contig3392.9060.1|Name=mRNA_H-paniculata_contig3392.9060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5472bp|location=Sequence derived from alignment at H-paniculata_contig3392:3120..8591+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3392:3120..8591+ >mRNA_H-paniculata_contig3392.9060.1 ID=mRNA_H-paniculata_contig3392.9060.1|Name=mRNA_H-paniculata_contig3392.9060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig3392:3120..8591+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |