mRNA_H-paniculata_contig3390.9057.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI) HSP 1 Score: 200 bits (508), Expect = 2.530e-52 Identity = 123/305 (40.33%), Postives = 173/305 (56.72%), Query Frame = 1
Query: 1459 GECVSDTFGSDGTPPCEKCPSGTEAAFGATFCTSPALKDLDLPESIANGILEDAVYGFAGRGYIDNNEDQVIVLNAQDQGLLEVTGRFIRFDAPVFDDDGGSDYPDEIPQSIALMVYLYDDFSPAVSDFVRGEGEVDASTGEFKATVANVPDGKSRVILSFIVLDPADTPTDSQSVWVPEDYSVYALEVLSNECVDSYLTFTLEWDTPDANMDLHVTEPGGLEVYGGNHG-DVGYIGEDNMQG-GPEEYLLYNGLSVDSDNVLGDY--YAMVWFGRAATVTKWILTVRVGGEVVLVEEGTFTGSS 2361
G C S++F S G PPC CP G + GAT C L L LPE+IA + DA+ GFAG G + I L +D G + ++G F+R DDG + +P S ++ +Y + P DFVRG+ +D STG F V ++P G SR++LSF+V+DPA+ + + + +AL+V ++ CV S LT TLEW +++DL+V EPGG VY N G DVG++ D+ G GPE Y++ + L + VLG+Y Y ++ G AAT T W LT RV GEVV +EEG F S+
Sbjct: 138 GLCASNSFSSTGAPPCTTCPDGEVSGTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAGTIQLTEEDGGSVSLSGTFVR-------DDGAA-----LPSSTSVFIYTENTAQP--DDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALDTAGAD------TAFALDVSNSACVPS-LTITLEWTGEISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATET-WRLTARVSGEVVWIEEGDFISST 420
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI) HSP 1 Score: 194 bits (493), Expect = 3.600e-49 Identity = 120/298 (40.27%), Postives = 168/298 (56.38%), Query Frame = 1
Query: 1480 FGSDGTPPCEKCPSGTEAAFGATFCTSPALKDLDLPESIANGILEDAVYGFAGRGYIDNNEDQVIVLNAQDQGLLEVTGRFIRFDAPVFDDDGGSDYPDEIPQSIALMVYLYDDFSPAVSDFVRGEGEVDASTGEFKATVANVPDGKSRVILSFIVLDPADTPTDSQSVWVPEDYSVYALEVLSNECVDSYLTFTLEWDTPDANMDLHVTEPGGLEVYGGNHG-DVGYIGEDNMQG-GPEEYLLYNGLSVDSDNVLGDY--YAMVWFGRAATVTKWILTVRVGGEVVLVEEGTFTGSS 2361
F S G PPC CP G + GAT C L L LPE+IA + DA+ GFAG G + I L +D G + ++G F+R DDG + +P S ++ +Y + P DFVRG+ +D STG F V ++P G SR++LSF+V+DPA+ + + + +AL+V ++ CV S LT TLEW +++DL+V EPGG VY N G DVG++ D+ G GPE Y++ + L + VLG+Y Y ++ G AAT T W LT RV GEVV +EEG F S+
Sbjct: 271 FSSTGAPPCTTCPDGEVSGTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAGTIQLTEEDGGSVSLSGTFVR-------DDGAA-----LPSSTSVFIYTENTAQP--DDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALDTAGAD------TAFALDVSNSACVPS-LTITLEWTGETSDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATET-WRLTARVSGEVVWIEEGDFISST 546
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 181 bits (458), Expect = 1.490e-44 Identity = 114/319 (35.74%), Postives = 172/319 (53.92%), Query Frame = 1
Query: 16 VTDLTASANEWDRRTGV-IGCDPGGCVATNTIDGSTAPDSRWSCQVSNDEF---CELTISFGVPQDIAKMRLALHKGNERIRSVNVWANGDLVTTVTSSGMTLGYESFRVIAPDTTTIVLQAAGLEPNGWLSITEVKFVVDDGRDTPPSPTPTGYDDDAILT-------EVTDVTVSANGWDERT-DGFGCTPAGCVAVNILDGSTAPESRWSCNAVKQLLLFCELTFEFGLPQDIAEIRMALHKGDERTRSVNVLVDGELVTTVMSSGMTLSYESYELIAPQATTIVLQAAGSRND-WLSITEVKFMTSDELETPPSP 933
V +T A+ +D R+ + GC P GCVA NT DG + +SRWSC+ S D C +T + + + +R+AL+KG+ R R+++++ +G +TT TSSG T G+ES V+ D +V L + WLSI EV+ VDDG DDD ++ E+ VT +A+ +D R D GC P GC A DG + SRWSC +L C ++++ G ++ ++R+ +++GD RTR+V+V VDG LVTT SSG T +ES +L + + + + WLSI E + M + PSP
Sbjct: 30 VMSVTPEASVFDTRSTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFES--VLLMDQGQVVELVGDLNDDEWLSILEVEIDVDDGI----------VDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSRWSC--APKLGGPCSISYDLGAEYNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIETEIMVYEGDAPAPSP 334
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 173 bits (438), Expect = 2.360e-40 Identity = 126/342 (36.84%), Postives = 174/342 (50.88%), Query Frame = 1
Query: 25 LTASANEWDRRTGVI-GCDPGGCVATNTIDGSTAPDSRWSCQVSNDEFCELTISFGVPQDIAKMRLALHKGNERIRSVNVWANGDLVTTVTSSGMTLGYESFRVIAPDTTTIVLQAAGLEPNGWLSITEVKFVV-DDGRDTPPS---------------PTPTG------YDDDAILTEVTDVTVSANGWD-ERTDGFGCTPAGCVAVNILDGSTAPESRWSCNAVKQLLLFCELTFEFGLPQDIAEIRMALHKGDERTRSVNVLVDGELVTTVMSSGMTLSYESYELIAPQATTIV-LQAAGSRNDWLSITEVKFMTSDELETPPSPVPTDGGATEPPISS 975
+TA++ +D R G GCDP GC A T DG + +SRWSC S C ++ G D++K+RLAL+ G R+R+V+V +G L TT TSSG T G+E+ + I + L+ WLSI E + +V DG PPS PTPT Y I T+ T VT +A+ +D + GC PAGC DG SRW+C L C ++++ G + E+R+AL+ GD R R++NV VDG LVTT SSG T +ES L + T+V LQ ++WLSI E + M + P P P AT PP ++
Sbjct: 192 VTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDESRWSCAPSLGGTCSISYDLGAVYDLSKLRLALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVTGV-LDNLEWLSIKETEIMVLSDGVVFPPSASSPTPAPVFAPVATPTPTVATPEQLYSAKEIGTQDTTVTTTADLFDPDLAVDNGCDPAGCTGALTRDGDMTDTSRWAC--APSLGGVCFISYDLGREFGLDEVRVALYNGDIRVRTINVFVDGALVTTWTSSGTTNGFESIALPDTASGTVVELQGVLDDSEWLSIIETEIMVWPQNVVTPPPAP---AATVPPATA 527
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 168 bits (425), Expect = 6.060e-39 Identity = 117/325 (36.00%), Postives = 171/325 (52.62%), Query Frame = 1
Query: 16 VTDLTASANEWDRRTGV-IGCDPGGCVATNTIDG-STAPDSRWSCQVSNDEF---CELTISFGVPQDIAKMRLALHKGNERIRSVNVWANGDLVTTVTSSGMTLGYESFRVIAPDTTTIVLQAAG-LEPNGWLSITEVKFVVDDGRDTPPSPTPTGYDDDAILTEVT--------DVTVSANGWDER--TDGFGCTPAGCVAVNILDGSTAPESRWSCNAVKQLLLFCELTFEFGLPQDIAEIRMALHKGDERTRSVNVLVDGELVTTVMSSGMTLSYESYELIAPQATTIVLQAAGSRNDWLSITEVKFMTSDELETPPSPVPT 942
+ ++TA A +D R GCDP GCVA T DG +T+ +SRW+C+ + + C +T G+ ++ + +A++KG+ER R++ + + TT TSSG T G+E+ + DT + G L + WLSI EVK ++DDG TG DDD T + VT A+ +D R DG GC P+GCV N DG + SRWSC L C ++++ G D+ E+R+A+ KG ER S+ V VD LVTT SSG T +E+ +L + + ++WLSI E + M LE SP+PT
Sbjct: 13 LANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIEL---DTMGRWISIVGVLADSEWLSIMEVKIMIDDGE--------TGSDDDNTTTNASGVEASTLGSVTAGASFYDPRLAVDG-GCDPSGCVVDNTRDGDLSTASRWSC--APTLGGECTISYDLGTAYDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQVLEITGVLDDSEWLSIIEAEIMV---LEDGASPMPT 320
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 168 bits (425), Expect = 8.690e-39 Identity = 118/324 (36.42%), Postives = 172/324 (53.09%), Query Frame = 1
Query: 1 AAFTEVTDL---TASANEWDRRTGVI-GCDPGGCVATNTIDGS-TAPDSRWSCQVSNDEF---CELTISFGVPQDIAKMRLALHKGNERIRSVNVWANGDLVTTVTSSGMTLGYESFRVIAPDTTTIVLQAAG-LEPNGWLSITEVKFVVDDGR----DTPPSPTPTGYDDDAILTEVTDV------TVSANGWDER--TDGFGCTPAGCVAVNILDGSTAPESRWSCNAVKQLLLFCELTFEFGLPQDIAEIRMALHKGDERTRSVNVLVDGELVTTVMSSGMTLSYESYELIAPQATTIVLQAAGSRNDWLSITEVKFMTSD 909
AA E + L TA A+ +D GCDP GCVA T DG T+ +SRWSCQ + + C +T G+ ++ + +A++KG+ER R++++ + TT TSSG T GYE+ + DT + G LE + WLSI EV+ +++DG D + T G DD T +V TV A+ +D DG GC P+GCVA N DG + SRWSC L C ++++ G ++ E+R+A++KG ER ++ V VD LVTT SSG T E+ +L T+ + ++WLSI EV+ M D
Sbjct: 23 AAIVEASTLATVTAVADLYDPSLSAENGCDPSGCVAELTRDGDVTSLESRWSCQPALGDAGSECRITYGLGIQYQLSAVNIAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIEL---DTMAQWISVVGVLEDSEWLSIMEVEIMIEDGESGSDDGDTTATDAGDDDTTTSTSAVEVGSLGAVTVEASFYDPSLTVDG-GCDPSGCVADNTRDGDLSTASRWSC--APTLGGECTISYDLGTVYELDELRLAMYKGTERQVTMEVRVDDTLVTTWTSSGTTDDLEAIDLSGTSGQTVEITGVLDDSEWLSIVEVEIMVED 340
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.160e-38 Identity = 111/300 (37.00%), Postives = 161/300 (53.67%), Query Frame = 1
Query: 70 GCDPGGCVATNTIDG-STAPDSRWSCQVSNDE---FCELTISFGVPQDIAKMRLALHKGNERIRSVNVWANGDLVTTVTSSGMTLGYESFRVIAPDTTTIVLQAAG-LEPNGWLSITEVKFVVDDGRDTPPSPTPTGYDDDAILTEVTD-----VTVSANGWDERT-DGFGCTPAGCVAVNILDGSTAPESRWSCNAVKQLLLFCELTFEFGLPQDIAEIRMALHKGDERTRSVNVLVDGELVTTVMSSGMTLSYESYELIAPQATTIVLQAAGSRNDWLSITEVKFMT-SDELETPPSP 933
GC P GC+ NT DG +T+ +SRWSC+ + + C +T G+ + + +A++KG+ER R++ + + T TSSG T +E+ V DT + G LE + WLSI EV+ +VDDG T DD A TEV VT ++ +D R D GC PAGC A DG + SRWSC L C ++++ G D++E+R+AL+KG R R+V+V VDG L TT SSG T +E+ +L + + ++W+SITE M SD + +PPSP
Sbjct: 51 GCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEINIDNLPYTVWTSSGTTTDFETIEV---DTMGRWIDIVGVLEDSEWLSIMEVEILVDDGV--------TDTDDVAGTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDGSRWSC--APSLGGTCSISYDLGAVYDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGVLDDSEWVSITETDIMVLSDSVVSPPSP 337
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI) HSP 1 Score: 102 bits (253), Expect = 1.660e-21 Identity = 53/138 (38.41%), Postives = 84/138 (60.87%), Query Frame = 1
Query: 19 TDLTASANEWDRRTGVIG-CDPGGCVATNTIDGSTAPDSRWSCQVS-NDEFCELTISFGVPQDIAKMRLALHKGNERIRSVNVWANGDLVTTVTSSGMTLGYESFRVIAPDTTTIVLQAAGLEPNGWLSITEVKFVVD 426
T + AN +D RT G CDP GC A+ T D S +SRWSC D C++T F PQDI ++++ +KG+ER+R++ + + T+TSSG + YE++ + +T + ++A L+ + W+SITEV+F+VD
Sbjct: 11 TTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRFMVD 148
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.130e-17 Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 1
Query: 490 EVTDVTVSANGWDERTDGFGCTPAGCVAVNILDGSTAPESRWSCNAVKQLLLF------CELTFEFGLPQDIAEIRMALHKGDERTRSVNVLVDGELVTTVMSSGMTLSYESYELI----APQATTIVLQAAG-SRNDWLSITEVKFMTSD 909
EVT VTV+ N +D RTD GC P GC N DG SRWSC+A C++ FE G Q + + +A KGD RTR++N+ V+GEL V S G T E++EL AP ++ ++++G + +++LSI EV+ D
Sbjct: 252 EVTTVTVTTNAFDARTDDDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAVGD 402
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 3.030e-13 Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = 1
Query: 19 TDLTASANEWD----RRTGVIGCDPGG---CVATNTIDG-STAPDSRWSC--QVSNDEF-CELTISFGVPQDIAKMRLALHKGNERIRSVNVWANGDLVTTVTSSGMTLGYESFRVIAPDTTTIVLQAAGLEPNGWLSITEVKFVV 423
T+++ SA D R +G +GC G C A N DG ST +SRWSC ++ +DE C++ SF PQ+I +++A KGNER+R++ V+ NG+L T S + + + V A + T++L++ L N W+S+ EV V
Sbjct: 160 TEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADST-FNTLGVTANEANTVMLESVSLLSNEWISLIEVLIFV 304 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3390.9057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3390.9057.1 >prot_H-paniculata_contig3390.9057.1 ID=prot_H-paniculata_contig3390.9057.1|Name=mRNA_H-paniculata_contig3390.9057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=755bp MRLALHKGNERIRSVNVWANGDLVTTVTSSGMTLGYESFRVIAPDTTTIVback to top mRNA from alignment at H-paniculata_contig3390:7172..17261- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3390.9057.1 ID=mRNA_H-paniculata_contig3390.9057.1|Name=mRNA_H-paniculata_contig3390.9057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10090bp|location=Sequence derived from alignment at H-paniculata_contig3390:7172..17261- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3390:7172..17261- >mRNA_H-paniculata_contig3390.9057.1 ID=mRNA_H-paniculata_contig3390.9057.1|Name=mRNA_H-paniculata_contig3390.9057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4530bp|location=Sequence derived from alignment at H-paniculata_contig3390:7172..17261- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |